Wall clock time and date at job start Tue Mar 31 2020 22:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34480 * 126.16449 * 2 1 4 4 C 1.30259 * 108.70298 * 180.26703 * 3 2 1 5 5 O 1.33976 * 108.75725 * 359.75895 * 4 3 2 6 6 C 1.34329 * 126.16790 * 179.85202 * 2 1 3 7 7 C 1.50697 * 126.44226 * 0.02562 * 6 2 1 8 8 N 1.46903 * 109.46985 * 89.70883 * 7 6 2 9 9 C 1.46907 * 110.99921 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.49521 * 35.06017 * 9 8 7 11 11 C 1.53034 * 109.49940 * 155.16330 * 9 8 7 12 12 C 1.53346 * 109.61010 * 181.32379 * 11 9 8 13 13 C 1.53195 * 109.14901 * 298.71225 * 12 11 9 14 14 N 1.46919 * 108.89273 * 54.57640 * 13 12 11 15 15 C 1.34780 * 120.63395 * 126.29715 * 14 13 12 16 16 O 1.21281 * 120.00120 * 180.02562 * 15 14 13 17 17 C 1.50700 * 119.99750 * 0.02562 * 15 14 13 18 18 S 1.80993 * 109.47149 * 179.97438 * 17 15 14 19 19 C 1.76204 * 100.00028 * 180.02562 * 18 17 15 20 20 H 1.07994 * 119.99732 * 359.97438 * 19 18 17 21 21 C 1.38802 * 120.00016 * 179.97438 * 19 18 17 22 22 N 1.31632 * 119.99828 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99881 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47454 * 89.99835 * 23 21 19 25 25 H 1.48505 * 109.46671 * 209.99797 * 23 21 19 26 26 H 1.48499 * 109.47174 * 329.99556 * 23 21 19 27 27 C 1.46933 * 118.74003 * 306.32349 * 14 13 12 28 28 H 1.09003 * 109.46896 * 270.14262 * 1 2 3 29 29 H 1.09001 * 109.47011 * 30.14351 * 1 2 3 30 30 H 1.09003 * 109.46916 * 150.14496 * 1 2 3 31 31 H 1.07991 * 125.62457 * 179.73665 * 4 3 2 32 32 H 1.09003 * 109.47164 * 329.71283 * 7 6 2 33 33 H 1.08997 * 109.47415 * 209.70637 * 7 6 2 34 34 H 1.00896 * 111.00209 * 303.95522 * 8 7 6 35 35 H 1.08999 * 109.45836 * 301.33801 * 11 9 8 36 36 H 1.09000 * 109.46169 * 61.29170 * 11 9 8 37 37 H 1.08997 * 109.68637 * 178.74435 * 12 11 9 38 38 H 1.09002 * 109.47277 * 58.54691 * 12 11 9 39 39 H 1.09002 * 109.58720 * 294.71670 * 13 12 11 40 40 H 1.08996 * 109.58651 * 174.43567 * 13 12 11 41 41 H 1.09003 * 109.46873 * 300.00082 * 17 15 14 42 42 H 1.09001 * 109.46886 * 59.99494 * 17 15 14 43 43 H 0.96999 * 119.99870 * 180.02562 * 22 21 19 44 44 H 1.08994 * 109.58580 * 173.39910 * 27 14 13 45 45 H 1.09006 * 109.57831 * 293.67403 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6948 -0.0058 5 8 3.5735 -0.6446 -0.0042 6 6 2.2998 -1.0844 0.0028 7 6 1.8494 -2.5225 0.0060 8 7 1.6968 -2.9909 -1.3780 9 6 1.2572 -4.3922 -1.4141 10 1 0.5821 -4.5832 -0.5800 11 6 0.5309 -4.6658 -2.7331 12 6 0.0419 -6.1190 -2.7594 13 6 1.2492 -7.0573 -2.6653 14 7 2.0342 -6.7045 -1.4746 15 6 2.3425 -7.6390 -0.5536 16 8 2.9907 -7.3351 0.4253 17 6 1.8817 -9.0617 -0.7403 18 16 2.4498 -10.0676 0.6530 19 6 1.7911 -11.6343 0.1878 20 1 1.2292 -11.7331 -0.7291 21 6 1.9945 -12.7415 1.0000 22 7 1.5020 -13.9118 0.6527 23 14 2.9659 -12.5703 2.5863 24 1 2.0416 -12.2343 3.6989 25 1 3.6552 -13.8513 2.8852 26 1 3.9731 -11.4895 2.4359 27 6 2.4763 -5.3134 -1.3064 28 1 -0.3633 0.0026 1.0277 29 1 -0.3633 0.8887 -0.5161 30 1 -0.3633 -0.8913 -0.5116 31 1 4.4066 1.3435 -0.0112 32 1 0.8937 -2.6028 0.5241 33 1 2.5924 -3.1349 0.5169 34 1 1.0611 -2.3994 -1.8919 35 1 -0.3230 -3.9944 -2.8235 36 1 1.2142 -4.4980 -3.5655 37 1 -0.4950 -6.3089 -3.6888 38 1 -0.6220 -6.2944 -1.9129 39 1 1.8675 -6.9476 -3.5563 40 1 0.9052 -8.0883 -2.5840 41 1 0.7930 -9.0877 -0.7877 42 1 2.2953 -9.4588 -1.6673 43 1 1.6438 -14.6854 1.2204 44 1 2.9399 -5.1932 -0.3273 45 1 3.1967 -5.0624 -2.0851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207431432.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:33 Heat of formation + Delta-G solvation = -40.204117 kcal Electronic energy + Delta-G solvation = -26589.771685 eV Core-core repulsion = 22733.871389 eV Total energy + Delta-G solvation = -3855.900296 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.32208 -41.27157 -39.01250 -36.83426 -36.09758 -34.67488 -33.86151 -32.71141 -31.63518 -30.15793 -28.44641 -27.85807 -26.33790 -25.92671 -23.48444 -23.02313 -22.05585 -21.66933 -20.40630 -19.51348 -18.32416 -18.08387 -17.70517 -17.26326 -17.08578 -16.79822 -16.59029 -15.94927 -15.81860 -15.62821 -15.52898 -15.03465 -14.87314 -14.67788 -14.43526 -14.20173 -14.15463 -13.96845 -13.65238 -13.51208 -13.35799 -13.32446 -13.02461 -12.95373 -12.66413 -12.52595 -12.02754 -11.95092 -11.93884 -11.86613 -11.52780 -11.49138 -11.17579 -10.95219 -10.51925 -9.90206 -9.73509 -9.49448 -9.00890 -8.51840 -6.22774 0.42425 0.96647 1.30473 1.45212 1.49665 1.53136 1.64620 1.82399 2.03504 2.24462 2.67840 2.86331 3.07916 3.30858 3.48931 3.69142 3.79382 3.85638 3.89642 4.01264 4.07270 4.14093 4.18843 4.28118 4.37117 4.39529 4.54447 4.60954 4.63567 4.69756 4.76763 4.78165 4.86257 4.94854 5.01759 5.06965 5.10874 5.14722 5.30565 5.40724 5.46107 5.70687 5.81919 6.11242 6.24150 6.28321 6.71932 6.93468 7.06492 8.60314 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018890 B = 0.002200 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.884176 B =12721.787378 C =13630.654177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.019 4.019 3 N -0.522 5.522 4 C 0.181 3.819 5 O -0.212 6.212 6 C -0.052 4.052 7 C 0.145 3.855 8 N -0.678 5.678 9 C 0.085 3.915 10 H 0.047 0.953 11 C -0.113 4.113 12 C -0.127 4.127 13 C 0.093 3.907 14 N -0.604 5.604 15 C 0.533 3.467 16 O -0.565 6.565 17 C -0.104 4.104 18 S -0.180 6.180 19 C -0.526 4.526 20 H 0.064 0.936 21 C 0.046 3.954 22 N -0.915 5.915 23 Si 0.913 3.087 24 H -0.262 1.262 25 H -0.259 1.259 26 H -0.238 1.238 27 C 0.123 3.877 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.289 0.711 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.358 0.642 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.061 0.939 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.277 0.723 44 H 0.063 0.937 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.452 29.203 -8.837 30.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.139 4.139 3 N -0.251 5.251 4 C -0.045 4.045 5 O -0.098 6.098 6 C -0.106 4.106 7 C 0.016 3.984 8 N -0.312 5.312 9 C -0.025 4.025 10 H 0.065 0.935 11 C -0.151 4.151 12 C -0.165 4.165 13 C -0.028 4.028 14 N -0.338 5.338 15 C 0.321 3.679 16 O -0.444 6.444 17 C -0.255 4.255 18 S 0.047 5.953 19 C -0.674 4.674 20 H 0.082 0.918 21 C -0.160 4.160 22 N -0.553 5.553 23 Si 0.735 3.265 24 H -0.187 1.187 25 H -0.183 1.183 26 H -0.162 1.162 27 C 0.000 4.000 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.304 0.696 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.179 0.821 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.125 0.875 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.030 29.902 -7.459 30.885 hybrid contribution -0.827 -1.392 -0.063 1.620 sum -2.857 28.510 -7.522 29.624 Atomic orbital electron populations 1.20226 0.84896 1.04146 1.03627 1.21978 0.99143 0.87427 1.05335 1.70385 1.02513 1.32391 1.19839 1.29016 0.98265 0.79110 0.98073 1.84473 1.30528 1.25426 1.69388 1.23145 0.80912 0.97659 1.08836 1.20287 1.00944 0.85857 0.91290 1.60213 1.55870 1.02709 1.12433 1.21729 0.94419 0.87054 0.99285 0.93483 1.21735 1.00568 0.96971 0.95833 1.21949 0.96539 0.93893 1.04145 1.22130 0.93313 1.00621 0.86775 1.48046 1.54490 1.08481 1.22753 1.20055 0.78978 0.86737 0.82166 1.90673 1.40892 1.81751 1.31073 1.23268 1.05455 0.94049 1.02722 1.84760 1.73384 1.04941 1.32205 1.22430 1.39563 0.93871 1.11513 0.91759 1.25541 0.95600 0.93930 1.00881 1.70011 1.45088 1.00471 1.39732 0.85887 0.80763 0.79837 0.80012 1.18719 1.18339 1.16235 1.21532 0.96896 0.78977 1.02564 0.90102 0.90263 0.89323 0.69580 0.89898 0.90325 0.82075 0.89355 0.89952 0.87450 0.91979 0.89133 0.89358 0.86907 0.87029 0.91372 0.91889 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.05 71.24 0.72 -0.09 16 2 C -0.02 -0.33 7.11 41.26 0.29 -0.04 16 3 N -0.52 -10.07 11.29 -304.06 -3.43 -13.50 16 4 C 0.18 2.66 13.23 130.48 1.73 4.39 16 5 O -0.21 -4.11 10.78 -3.81 -0.04 -4.15 16 6 C -0.05 -0.95 6.90 24.79 0.17 -0.78 16 7 C 0.15 2.30 5.64 85.56 0.48 2.78 16 8 N -0.68 -9.46 6.30 -495.17 -3.12 -12.58 16 9 C 0.09 1.30 2.65 44.99 0.12 1.42 16 10 H 0.05 0.81 7.80 -2.39 -0.02 0.79 16 11 C -0.11 -1.14 5.17 30.72 0.16 -0.98 16 12 C -0.13 -1.46 6.11 30.78 0.19 -1.28 16 13 C 0.09 1.58 6.33 86.36 0.55 2.12 16 14 N -0.60 -15.06 2.97 -818.90 -2.44 -17.50 16 15 C 0.53 18.84 7.72 87.66 0.68 19.51 16 16 O -0.57 -24.72 15.27 -3.03 -0.05 -24.77 16 17 C -0.10 -3.93 4.50 71.24 0.32 -3.61 16 18 S -0.18 -9.10 18.55 -56.49 -1.05 -10.15 16 19 C -0.53 -30.42 10.04 67.96 0.68 -29.74 16 20 H 0.06 3.89 8.03 -2.91 -0.02 3.87 16 21 C 0.05 2.69 5.50 84.86 0.47 3.16 16 22 N -0.92 -55.34 13.97 21.65 0.30 -55.03 16 23 Si 0.91 45.01 27.74 68.60 1.90 46.92 16 24 H -0.26 -12.62 7.11 99.48 0.71 -11.92 16 25 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.24 -11.80 6.74 99.48 0.67 -11.13 16 27 C 0.12 2.75 5.90 86.36 0.51 3.26 16 28 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 0.63 7.80 -2.39 -0.02 0.61 16 31 H 0.29 1.08 8.06 -2.92 -0.02 1.06 16 32 H 0.08 1.05 7.72 -2.39 -0.02 1.03 16 33 H 0.08 1.54 7.56 -2.39 -0.02 1.52 16 34 H 0.36 3.71 8.33 -89.70 -0.75 2.97 16 35 H 0.09 0.56 8.10 -2.39 -0.02 0.54 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.09 1.58 5.93 -2.39 -0.01 1.57 16 41 H 0.11 3.88 7.69 -2.39 -0.02 3.86 16 42 H 0.11 3.89 7.94 -2.40 -0.02 3.87 16 43 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.06 1.78 6.48 -2.39 -0.02 1.77 16 45 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 Total: -1.00 -79.24 381.41 -0.64 -79.87 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.22 Total: 10.76 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 7.06 Total: 0.13 kcal Atomic # 7 Polarization: -89.93 SS G_CDS: -8.69 Total: -98.61 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.09 Total: -28.92 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.90 Total: 46.92 kcal Atomic # 16 Polarization: -9.10 SS G_CDS: -1.05 Total: -10.15 kcal Total: -79.24 -0.64 -79.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207431432.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.668 kcal (2) G-P(sol) polarization free energy of solvation -79.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds