Wall clock time and date at job start Tue Mar 31 2020 22:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00259 * 2 1 4 4 H 1.09001 * 110.64011 * 26.85494 * 3 2 1 5 5 C 1.54323 * 110.87211 * 263.60804 * 3 2 1 6 6 N 1.47016 * 107.27209 * 219.37010 * 5 3 2 7 7 C 1.36946 * 125.64792 * 178.98726 * 6 5 3 8 8 H 1.07997 * 119.99764 * 174.79153 * 7 6 5 9 9 C 1.38809 * 120.00058 * 354.78869 * 7 6 5 10 10 N 1.31622 * 119.99904 * 7.05068 * 9 7 6 11 11 Si 1.86795 * 119.99890 * 187.05573 * 9 7 6 12 12 H 1.48497 * 109.47265 * 94.98992 * 11 9 7 13 13 H 1.48499 * 109.47078 * 214.98402 * 11 9 7 14 14 H 1.48499 * 109.47443 * 334.98241 * 11 9 7 15 15 C 1.47426 * 108.70332 * 358.94342 * 6 5 3 16 16 C 1.54906 * 104.83341 * 24.12569 * 15 6 5 17 17 H 1.09003 * 111.03786 * 81.08009 * 16 15 6 18 18 N 1.46500 * 111.00584 * 204.91849 * 16 15 6 19 19 C 1.34775 * 119.99894 * 267.20036 * 18 16 15 20 20 O 1.21280 * 119.99742 * 359.97438 * 19 18 16 21 21 C 1.50699 * 120.00047 * 180.02562 * 19 18 16 22 22 C 1.52992 * 109.47256 * 179.97438 * 21 19 18 23 23 C 1.50699 * 109.47256 * 179.97438 * 22 21 19 24 24 N 1.29026 * 124.91722 * 90.00029 * 23 22 21 25 25 C 1.31788 * 117.12546 * 179.97438 * 24 23 22 26 26 C 1.50701 * 122.74958 * 179.97438 * 25 24 23 27 27 C 1.33634 * 114.49821 * 359.97438 * 25 24 23 28 28 S 1.70977 * 124.91660 * 269.69369 * 23 22 21 29 29 H 1.09002 * 109.47117 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47038 * 300.00499 * 1 2 3 31 31 H 1.09003 * 109.46676 * 59.99990 * 1 2 3 32 32 H 1.09007 * 109.88308 * 338.79339 * 5 3 2 33 33 H 1.09004 * 109.88087 * 99.95513 * 5 3 2 34 34 H 0.97002 * 119.99696 * 179.97438 * 10 9 7 35 35 H 1.09000 * 110.36383 * 265.28406 * 15 6 5 36 36 H 1.09001 * 110.36292 * 142.96879 * 15 6 5 37 37 H 0.96994 * 119.99767 * 87.19404 * 18 16 15 38 38 H 1.09002 * 109.46801 * 59.99338 * 21 19 18 39 39 H 1.08998 * 109.46716 * 299.99948 * 21 19 18 40 40 H 1.08998 * 109.47510 * 299.99822 * 22 21 19 41 41 H 1.09002 * 109.47461 * 60.00103 * 22 21 19 42 42 H 1.08996 * 109.46796 * 89.99729 * 26 25 24 43 43 H 1.08997 * 109.47056 * 209.99706 * 26 25 24 44 44 H 1.09002 * 109.46971 * 329.99519 * 26 25 24 45 45 H 1.08006 * 126.03758 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3353 2.0266 0.4608 5 6 2.3806 1.7424 -1.4330 6 7 3.6670 2.4499 -1.3549 7 6 4.3517 2.9805 -2.4156 8 1 5.2495 3.5560 -2.2453 9 6 3.8919 2.7784 -3.7096 10 7 2.7278 2.1982 -3.9113 11 14 4.9252 3.3297 -5.1648 12 1 5.7394 2.1885 -5.6545 13 1 4.0338 3.8047 -6.2533 14 1 5.8240 4.4343 -4.7436 15 6 4.0972 2.4946 0.0545 16 6 3.3817 1.2957 0.7257 17 1 3.9169 0.3651 0.5371 18 7 3.2164 1.5210 2.1638 19 6 4.1466 1.0688 3.0280 20 8 5.1201 0.4750 2.6150 21 6 3.9763 1.3000 4.5074 22 6 5.1619 0.6911 5.2585 23 6 4.9920 0.9228 6.7378 24 7 4.3856 0.1205 7.5461 25 6 4.3271 0.4757 8.8139 26 6 3.6499 -0.3648 9.8656 27 6 4.9175 1.6423 9.0904 28 16 5.5813 2.2833 7.5893 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 2.4776 0.8663 -2.0743 33 1 1.6139 2.4097 -1.8269 34 1 2.4063 2.0573 -4.8156 35 1 3.7842 3.4306 0.5171 36 1 5.1787 2.3787 0.1248 37 1 2.4376 1.9956 2.4940 38 1 3.0526 0.8297 4.8446 39 1 3.9318 2.3710 4.7049 40 1 5.2060 -0.3799 5.0609 41 1 6.0858 1.1611 4.9213 42 1 4.3721 -1.0577 10.2973 43 1 3.2543 0.2822 10.6485 44 1 2.8336 -0.9266 9.4116 45 1 4.9802 2.1080 10.0628 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213173304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:37 Heat of formation + Delta-G solvation = -12.898135 kcal Electronic energy + Delta-G solvation = -26574.931612 eV Core-core repulsion = 22720.215392 eV Total energy + Delta-G solvation = -3854.716220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.25197 -39.71038 -38.18135 -35.93521 -34.42924 -34.03035 -31.87638 -31.24361 -28.86216 -28.00958 -27.43180 -26.14572 -25.97678 -24.12472 -22.43778 -20.64054 -20.49222 -19.99379 -19.91721 -17.99491 -17.39621 -16.82671 -16.36786 -15.70982 -15.61139 -15.33296 -15.19693 -14.76746 -14.44371 -14.24056 -13.99089 -13.85531 -13.46408 -13.27011 -13.09520 -12.93435 -12.84727 -12.53686 -12.22842 -12.15288 -11.89507 -11.61429 -11.59218 -11.34143 -11.22080 -11.02629 -10.81805 -10.74535 -10.15953 -10.00900 -9.92722 -9.82389 -9.76804 -9.68050 -9.15229 -8.98005 -8.74627 -8.56089 -6.89249 -5.75252 -3.09033 0.38763 1.06781 1.45594 2.45389 2.76721 3.23739 3.41054 3.46405 3.47808 3.78836 4.13742 4.48327 4.53873 4.71322 4.80496 4.84309 4.90578 5.03719 5.15680 5.22586 5.30270 5.33059 5.39018 5.46682 5.47694 5.57607 5.64034 5.68390 5.71316 5.81294 5.84543 5.91992 5.95111 6.05298 6.16277 6.51617 6.61788 6.84842 7.24598 7.46381 7.47121 7.65664 7.72049 7.86291 8.19561 8.37721 9.16538 9.77016 10.40417 11.36555 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018989 B = 0.002161 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.187139 B =12954.071568 C =14069.346161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.377 6.377 3 C 0.055 3.945 4 H 0.062 0.938 5 C 0.164 3.836 6 N -0.600 5.600 7 C -0.230 4.230 8 H 0.081 0.919 9 C -0.006 4.006 10 N -0.920 5.920 11 Si 0.913 3.087 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.280 1.280 15 C 0.131 3.869 16 C 0.131 3.869 17 H 0.107 0.893 18 N -0.716 5.716 19 C 0.515 3.485 20 O -0.537 6.537 21 C -0.133 4.133 22 C -0.030 4.030 23 C 0.061 3.939 24 N -0.471 5.471 25 C 0.067 3.933 26 C -0.079 4.079 27 C -0.270 4.270 28 S 0.121 5.879 29 H 0.079 0.921 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.253 0.747 35 H 0.022 0.978 36 H 0.050 0.950 37 H 0.396 0.604 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.965 -0.700 26.292 26.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.295 6.295 3 C -0.004 4.004 4 H 0.080 0.920 5 C 0.039 3.961 6 N -0.328 5.328 7 C -0.358 4.358 8 H 0.099 0.901 9 C -0.203 4.203 10 N -0.567 5.567 11 Si 0.743 3.257 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.206 1.206 15 C 0.003 3.997 16 C 0.026 3.974 17 H 0.125 0.875 18 N -0.366 5.366 19 C 0.301 3.699 20 O -0.413 6.413 21 C -0.175 4.175 22 C -0.071 4.071 23 C -0.218 4.218 24 N -0.186 5.186 25 C -0.065 4.065 26 C -0.139 4.139 27 C -0.409 4.409 28 S 0.377 5.623 29 H 0.098 0.902 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.040 0.960 36 H 0.069 0.931 37 H 0.230 0.770 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.123 0.877 41 H 0.115 0.885 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.825 -0.868 25.262 25.291 hybrid contribution -0.640 0.332 0.070 0.724 sum -1.464 -0.536 25.332 25.380 Atomic orbital electron populations 1.22707 0.81770 1.02062 0.99700 1.87916 1.19048 1.27558 1.95027 1.23847 0.92995 0.84068 0.99468 0.91987 1.21566 0.88156 0.97285 0.89122 1.44259 1.21288 1.66436 1.00845 1.19067 1.05845 1.26811 0.84048 0.90118 1.24848 0.97320 1.00712 0.97379 1.69954 1.18420 1.48253 1.20059 0.86083 0.79285 0.78021 0.82289 1.21479 1.21781 1.20567 1.21827 0.97812 0.93774 0.86260 1.22420 0.96375 1.01122 0.77485 0.87462 1.45939 1.24941 1.58513 1.07184 1.20382 0.82858 0.78662 0.88001 1.90734 1.29893 1.41074 1.79639 1.21623 1.00440 1.03222 0.92230 1.20020 0.99047 1.04670 0.83344 1.27102 0.99324 0.94115 1.01219 1.66160 1.18315 1.31632 1.02504 1.20350 1.00143 0.94410 0.91565 1.20365 1.00188 0.98540 0.94760 1.26815 1.09568 1.01545 1.02947 1.84115 1.53292 1.24961 0.99966 0.90241 0.94864 0.93671 0.91814 0.93568 0.93637 0.96019 0.93131 0.77001 0.88290 0.88673 0.87693 0.88503 0.90625 0.90761 0.90477 0.80733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.85 101.05 1.10 1.58 16 2 O -0.38 -6.95 10.44 -35.23 -0.37 -7.32 16 3 C 0.06 1.04 3.09 -24.90 -0.08 0.96 16 4 H 0.06 1.01 7.68 -51.93 -0.40 0.61 16 5 C 0.16 3.97 5.16 -3.07 -0.02 3.96 16 6 N -0.60 -15.39 3.39 -170.07 -0.58 -15.97 16 7 C -0.23 -6.42 10.27 -15.06 -0.15 -6.58 16 8 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 9 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 10 N -0.92 -26.92 10.36 55.49 0.57 -26.34 16 11 Si 0.91 22.17 29.56 -169.99 -5.02 17.15 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 C 0.13 2.75 6.93 -2.53 -0.02 2.74 16 16 C 0.13 2.43 3.15 -65.78 -0.21 2.22 16 17 H 0.11 2.30 7.54 -51.93 -0.39 1.91 16 18 N -0.72 -10.02 5.20 -51.73 -0.27 -10.29 16 19 C 0.52 7.23 7.83 -10.99 -0.09 7.15 16 20 O -0.54 -9.76 15.62 5.56 0.09 -9.68 16 21 C -0.13 -1.30 5.68 -27.89 -0.16 -1.46 16 22 C -0.03 -0.31 5.08 -27.89 -0.14 -0.45 16 23 C 0.06 0.62 6.64 -13.46 -0.09 0.53 16 24 N -0.47 -5.33 10.53 -8.06 -0.08 -5.42 16 25 C 0.07 0.63 6.74 -84.22 -0.57 0.06 16 26 C -0.08 -0.51 10.31 36.01 0.37 -0.14 16 27 C -0.27 -2.12 11.13 29.12 0.32 -1.80 16 28 S 0.12 1.01 23.18 -107.50 -2.49 -1.49 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.03 0.39 8.11 -51.93 -0.42 -0.03 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.76 7.22 -51.92 -0.37 1.39 16 33 H 0.05 1.20 7.61 -51.93 -0.40 0.81 16 34 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.40 4.29 8.57 -40.82 -0.35 3.94 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.10 1.21 8.10 -51.93 -0.42 0.79 16 41 H 0.10 0.98 8.10 -51.93 -0.42 0.56 16 42 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.33 8.12 -51.93 -0.42 -0.10 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.18 0.90 8.06 -52.48 -0.42 0.48 16 LS Contribution 388.32 15.07 5.85 5.85 Total: -1.00 -34.15 388.32 -9.07 -43.22 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -6.95 Total: 1.79 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: 0.18 Total: 8.50 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -0.36 Total: -58.02 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.28 Total: -16.99 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.49 Total: -1.49 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.15 -9.07 -43.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213173304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.318 kcal (2) G-P(sol) polarization free energy of solvation -34.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds