Wall clock time and date at job start Tue Mar 31 2020 22:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00259 * 2 1 4 4 H 1.09001 * 110.64011 * 26.85494 * 3 2 1 5 5 C 1.54323 * 110.87211 * 263.60804 * 3 2 1 6 6 N 1.47016 * 107.27209 * 219.37010 * 5 3 2 7 7 C 1.36946 * 125.64792 * 178.98726 * 6 5 3 8 8 H 1.07997 * 119.99764 * 174.79153 * 7 6 5 9 9 C 1.38809 * 120.00058 * 354.78869 * 7 6 5 10 10 N 1.31622 * 119.99904 * 7.05068 * 9 7 6 11 11 Si 1.86795 * 119.99890 * 187.05573 * 9 7 6 12 12 H 1.48497 * 109.47265 * 94.98992 * 11 9 7 13 13 H 1.48499 * 109.47078 * 214.98402 * 11 9 7 14 14 H 1.48499 * 109.47443 * 334.98241 * 11 9 7 15 15 C 1.47426 * 108.70332 * 358.94342 * 6 5 3 16 16 C 1.54906 * 104.83341 * 24.12569 * 15 6 5 17 17 H 1.09003 * 111.03786 * 81.08009 * 16 15 6 18 18 N 1.46500 * 111.00584 * 204.91849 * 16 15 6 19 19 C 1.34775 * 119.99894 * 267.20036 * 18 16 15 20 20 O 1.21280 * 119.99742 * 359.97438 * 19 18 16 21 21 C 1.50699 * 120.00047 * 180.02562 * 19 18 16 22 22 C 1.52992 * 109.47256 * 179.97438 * 21 19 18 23 23 C 1.50699 * 109.47256 * 179.97438 * 22 21 19 24 24 N 1.29026 * 124.91722 * 90.00029 * 23 22 21 25 25 C 1.31788 * 117.12546 * 179.97438 * 24 23 22 26 26 C 1.50701 * 122.74958 * 179.97438 * 25 24 23 27 27 C 1.33634 * 114.49821 * 359.97438 * 25 24 23 28 28 S 1.70977 * 124.91660 * 269.69369 * 23 22 21 29 29 H 1.09002 * 109.47117 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47038 * 300.00499 * 1 2 3 31 31 H 1.09003 * 109.46676 * 59.99990 * 1 2 3 32 32 H 1.09007 * 109.88308 * 338.79339 * 5 3 2 33 33 H 1.09004 * 109.88087 * 99.95513 * 5 3 2 34 34 H 0.97002 * 119.99696 * 179.97438 * 10 9 7 35 35 H 1.09000 * 110.36383 * 265.28406 * 15 6 5 36 36 H 1.09001 * 110.36292 * 142.96879 * 15 6 5 37 37 H 0.96994 * 119.99767 * 87.19404 * 18 16 15 38 38 H 1.09002 * 109.46801 * 59.99338 * 21 19 18 39 39 H 1.08998 * 109.46716 * 299.99948 * 21 19 18 40 40 H 1.08998 * 109.47510 * 299.99822 * 22 21 19 41 41 H 1.09002 * 109.47461 * 60.00103 * 22 21 19 42 42 H 1.08996 * 109.46796 * 89.99729 * 26 25 24 43 43 H 1.08997 * 109.47056 * 209.99706 * 26 25 24 44 44 H 1.09002 * 109.46971 * 329.99519 * 26 25 24 45 45 H 1.08006 * 126.03758 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3353 2.0266 0.4608 5 6 2.3806 1.7424 -1.4330 6 7 3.6670 2.4499 -1.3549 7 6 4.3517 2.9805 -2.4156 8 1 5.2495 3.5560 -2.2453 9 6 3.8919 2.7784 -3.7096 10 7 2.7278 2.1982 -3.9113 11 14 4.9252 3.3297 -5.1648 12 1 5.7394 2.1885 -5.6545 13 1 4.0338 3.8047 -6.2533 14 1 5.8240 4.4343 -4.7436 15 6 4.0972 2.4946 0.0545 16 6 3.3817 1.2957 0.7257 17 1 3.9169 0.3651 0.5371 18 7 3.2164 1.5210 2.1638 19 6 4.1466 1.0688 3.0280 20 8 5.1201 0.4750 2.6150 21 6 3.9763 1.3000 4.5074 22 6 5.1619 0.6911 5.2585 23 6 4.9920 0.9228 6.7378 24 7 4.3856 0.1205 7.5461 25 6 4.3271 0.4757 8.8139 26 6 3.6499 -0.3648 9.8656 27 6 4.9175 1.6423 9.0904 28 16 5.5813 2.2833 7.5893 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 2.4776 0.8663 -2.0743 33 1 1.6139 2.4097 -1.8269 34 1 2.4063 2.0573 -4.8156 35 1 3.7842 3.4306 0.5171 36 1 5.1787 2.3787 0.1248 37 1 2.4376 1.9956 2.4940 38 1 3.0526 0.8297 4.8446 39 1 3.9318 2.3710 4.7049 40 1 5.2060 -0.3799 5.0609 41 1 6.0858 1.1611 4.9213 42 1 4.3721 -1.0577 10.2973 43 1 3.2543 0.2822 10.6485 44 1 2.8336 -0.9266 9.4116 45 1 4.9802 2.1080 10.0628 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213173304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:37 Heat of formation + Delta-G solvation = -37.646026 kcal Electronic energy + Delta-G solvation = -26576.004761 eV Core-core repulsion = 22720.215392 eV Total energy + Delta-G solvation = -3855.789369 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.18733 -40.75961 -39.64342 -37.51456 -35.63858 -35.18237 -33.68445 -32.04914 -30.56573 -29.06538 -28.49039 -27.55233 -27.08518 -25.81538 -23.30860 -22.27151 -21.98669 -21.28571 -20.65422 -19.14685 -18.69998 -18.12916 -17.75588 -17.22804 -16.65826 -16.52130 -16.16207 -15.89226 -15.79776 -15.67594 -15.13200 -15.01190 -14.92279 -14.51207 -14.09895 -13.98248 -13.76056 -13.63537 -13.57982 -13.25034 -13.14212 -12.97484 -12.87286 -12.77891 -12.56381 -12.30882 -12.19456 -12.14645 -12.05997 -11.87901 -11.62442 -11.02853 -10.76017 -10.63105 -10.56285 -10.36111 -10.06580 -9.61928 -8.96326 -7.89150 -5.25701 -0.26903 0.42937 0.81800 1.45047 1.48417 1.56485 1.63880 1.76734 2.08349 2.46456 2.78099 3.08397 3.30826 3.54168 3.63650 3.84658 3.93286 3.97138 4.05231 4.12115 4.22100 4.31058 4.39227 4.43371 4.46278 4.56413 4.60529 4.64897 4.77970 4.79531 4.84613 4.86232 4.87433 4.99863 5.02338 5.07420 5.32465 5.38418 5.39439 5.49521 5.65624 6.13492 6.32251 6.55700 6.80981 7.04187 7.27152 7.69815 8.32605 9.20929 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018989 B = 0.002161 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.187139 B =12954.071568 C =14069.346161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.075 3.925 4 H 0.098 0.902 5 C 0.174 3.826 6 N -0.623 5.623 7 C -0.246 4.246 8 H 0.085 0.915 9 C -0.063 4.063 10 N -0.948 5.948 11 Si 0.979 3.021 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.265 1.265 15 C 0.131 3.869 16 C 0.149 3.851 17 H 0.074 0.926 18 N -0.702 5.702 19 C 0.515 3.485 20 O -0.582 6.582 21 C -0.118 4.118 22 C -0.027 4.027 23 C 0.041 3.959 24 N -0.498 5.498 25 C 0.043 3.957 26 C -0.077 4.077 27 C -0.261 4.261 28 S 0.148 5.852 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.035 0.965 32 H 0.017 0.983 33 H 0.020 0.980 34 H 0.249 0.751 35 H 0.046 0.954 36 H 0.037 0.963 37 H 0.417 0.583 38 H 0.115 0.885 39 H 0.125 0.875 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.068 0.932 45 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.499 0.684 29.152 29.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C 0.016 3.984 4 H 0.116 0.884 5 C 0.048 3.952 6 N -0.351 5.351 7 C -0.374 4.374 8 H 0.102 0.898 9 C -0.257 4.257 10 N -0.596 5.596 11 Si 0.807 3.193 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.190 1.190 15 C 0.005 3.995 16 C 0.042 3.958 17 H 0.092 0.908 18 N -0.354 5.354 19 C 0.303 3.697 20 O -0.462 6.462 21 C -0.159 4.159 22 C -0.068 4.068 23 C -0.237 4.237 24 N -0.215 5.215 25 C -0.088 4.088 26 C -0.136 4.136 27 C -0.400 4.400 28 S 0.403 5.597 29 H 0.117 0.883 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.035 0.965 33 H 0.038 0.962 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.255 0.745 38 H 0.133 0.867 39 H 0.143 0.857 40 H 0.103 0.897 41 H 0.113 0.887 42 H 0.099 0.901 43 H 0.115 0.885 44 H 0.087 0.913 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -1.383 0.533 28.179 28.218 hybrid contribution -0.458 -0.113 -0.736 0.874 sum -1.841 0.421 27.443 27.508 Atomic orbital electron populations 1.22988 0.79346 1.03842 1.00780 1.87898 1.21754 1.27134 1.94921 1.23516 0.93807 0.85221 0.95849 0.88420 1.21292 0.87140 0.94702 0.92105 1.44533 1.21933 1.66277 1.02308 1.19445 1.06073 1.26725 0.85185 0.89766 1.25704 0.98500 1.01428 1.00023 1.70170 1.19821 1.49522 1.20066 0.85048 0.77733 0.77752 0.78739 1.21720 1.21796 1.18970 1.21948 0.97342 0.95777 0.84473 1.21818 0.95452 0.98392 0.80101 0.90826 1.45695 1.25946 1.58713 1.05009 1.21145 0.81711 0.77232 0.89592 1.90726 1.31823 1.42977 1.80646 1.21575 1.00836 1.05186 0.88271 1.19902 0.99298 1.03485 0.84101 1.26962 1.00417 0.95305 1.00993 1.66163 1.19059 1.32596 1.03636 1.20778 1.01139 0.95501 0.91431 1.20437 0.99903 0.98732 0.94576 1.27213 1.07980 1.00905 1.03922 1.83994 1.52480 1.23444 0.99794 0.88279 0.91608 0.94639 0.96474 0.96166 0.94217 0.93675 0.94496 0.74525 0.86661 0.85686 0.89719 0.88698 0.90112 0.88515 0.91258 0.77965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.85 113.37 1.23 1.92 16 2 O -0.40 -14.45 10.44 -148.98 -1.56 -16.00 16 3 C 0.08 2.78 3.09 31.78 0.10 2.88 16 4 H 0.10 2.92 7.68 -2.39 -0.02 2.90 16 5 C 0.17 8.68 5.16 86.73 0.45 9.13 16 6 N -0.62 -32.72 3.39 -691.99 -2.35 -35.07 16 7 C -0.25 -14.03 10.27 84.03 0.86 -13.17 16 8 H 0.08 4.61 7.84 -2.91 -0.02 4.58 16 9 C -0.06 -3.65 5.48 84.86 0.46 -3.19 16 10 N -0.95 -57.50 10.36 21.65 0.22 -57.28 16 11 Si 0.98 46.40 29.56 68.60 2.03 48.43 16 12 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 13 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 14 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 15 C 0.13 5.53 6.93 86.85 0.60 6.13 16 16 C 0.15 5.49 3.15 46.38 0.15 5.64 16 17 H 0.07 3.26 7.54 -2.39 -0.02 3.24 16 18 N -0.70 -18.29 5.20 -435.97 -2.27 -20.55 16 19 C 0.52 13.81 7.83 87.66 0.69 14.50 16 20 O -0.58 -21.40 15.62 -3.03 -0.05 -21.45 16 21 C -0.12 -2.03 5.68 29.84 0.17 -1.86 16 22 C -0.03 -0.53 5.08 29.84 0.15 -0.38 16 23 C 0.04 0.77 6.64 88.52 0.59 1.36 16 24 N -0.50 -10.68 10.53 -179.40 -1.89 -12.57 16 25 C 0.04 0.71 6.74 41.52 0.28 0.99 16 26 C -0.08 -0.84 10.31 71.24 0.73 -0.11 16 27 C -0.26 -3.38 11.13 66.77 0.74 -2.63 16 28 S 0.15 2.11 23.18 -56.49 -1.31 0.80 16 29 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.07 1.32 8.11 -2.39 -0.02 1.30 16 31 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.02 1.00 7.22 -2.38 -0.02 0.98 16 33 H 0.02 1.10 7.61 -2.38 -0.02 1.08 16 34 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.42 7.52 8.57 -92.71 -0.79 6.73 16 38 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.08 2.00 8.10 -2.39 -0.02 1.98 16 41 H 0.09 1.87 8.10 -2.39 -0.02 1.86 16 42 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.10 0.57 8.12 -2.39 -0.02 0.55 16 44 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.20 1.32 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -78.31 388.32 0.24 -78.06 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.20 Total: 14.40 kcal Atomic # 6 Polarization: 14.02 SS G_CDS: 7.20 Total: 21.22 kcal Atomic # 7 Polarization: -119.18 SS G_CDS: -6.28 Total: -125.46 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -1.60 Total: -37.45 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -1.31 Total: 0.80 kcal Total: -78.31 0.24 -78.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213173304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.418 kcal (2) G-P(sol) polarization free energy of solvation -78.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds