Wall clock time and date at job start Tue Mar 31 2020 22:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34039 * 126.78175 * 2 1 4 4 N 1.20918 * 111.56648 * 180.28322 * 3 2 1 5 5 C 1.30175 * 111.60916 * 359.76900 * 4 3 2 6 6 C 1.35451 * 126.77119 * 179.89174 * 2 1 3 7 7 C 1.50699 * 128.00890 * 0.02562 * 6 2 1 8 8 N 1.46902 * 109.47051 * 79.70915 * 7 6 2 9 9 C 1.46893 * 110.99984 * 179.97438 * 8 7 6 10 10 H 1.09002 * 110.29398 * 35.67948 * 9 8 7 11 11 C 1.54006 * 110.32700 * 273.54146 * 9 8 7 12 12 N 1.47482 * 107.08610 * 242.31154 * 11 9 8 13 13 C 1.34776 * 127.03459 * 154.51332 * 12 11 9 14 14 O 1.21282 * 119.99940 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00035 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.47349 * 180.02562 * 15 13 12 17 17 C 1.76194 * 100.00068 * 180.02562 * 16 15 13 18 18 H 1.08006 * 120.00457 * 359.97438 * 17 16 15 19 19 C 1.38801 * 120.00163 * 180.02562 * 17 16 15 20 20 N 1.31640 * 119.99650 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00461 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46966 * 89.99788 * 21 19 17 23 23 H 1.48500 * 109.47223 * 209.99878 * 21 19 17 24 24 H 1.48501 * 109.47335 * 329.99952 * 21 19 17 25 25 C 1.48124 * 105.92940 * 334.78164 * 12 11 9 26 26 C 1.54590 * 103.42447 * 39.02324 * 25 12 11 27 27 H 1.08997 * 110.73400 * 81.24597 * 26 25 12 28 28 C 1.53009 * 110.82954 * 204.44799 * 26 25 12 29 29 H 1.09004 * 109.47482 * 270.11141 * 1 2 3 30 30 H 1.08999 * 109.46879 * 30.10932 * 1 2 3 31 31 H 1.08999 * 109.47488 * 150.10720 * 1 2 3 32 32 H 1.07996 * 126.80351 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.47226 * 319.70375 * 7 6 2 34 34 H 1.09003 * 109.46842 * 199.70367 * 7 6 2 35 35 H 1.00904 * 110.99411 * 303.94866 * 8 7 6 36 36 H 1.09000 * 109.91159 * 122.95407 * 11 9 8 37 37 H 1.08997 * 109.91374 * 1.67350 * 11 9 8 38 38 H 1.09001 * 109.47122 * 60.00223 * 15 13 12 39 39 H 1.09004 * 109.47371 * 300.00514 * 15 13 12 40 40 H 0.97001 * 119.99781 * 180.02562 * 20 19 17 41 41 H 1.08999 * 110.66077 * 157.51296 * 25 12 11 42 42 H 1.09005 * 110.65643 * 280.61653 * 25 12 11 43 43 H 1.09002 * 109.46928 * 173.56446 * 28 26 25 44 44 H 1.08998 * 109.47075 * 293.55689 * 28 26 25 45 45 H 1.08993 * 109.47419 * 53.56427 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3096 1.0735 0.0000 4 7 3.4763 0.7562 -0.0056 5 6 3.6213 -0.5374 -0.0051 6 6 2.3178 -1.0850 0.0021 7 6 1.9222 -2.5391 0.0043 8 7 1.5554 -2.9489 -1.3579 9 6 1.1637 -4.3642 -1.3945 10 1 0.6338 -4.6335 -0.4808 11 6 2.4045 -5.2581 -1.5766 12 7 2.2394 -5.9731 -2.8559 13 6 3.2165 -6.4668 -3.6419 14 8 4.3781 -6.3417 -3.3162 15 6 2.8658 -7.1753 -4.9249 16 16 4.3833 -7.7183 -5.7486 17 6 3.6971 -8.4906 -7.1759 18 1 2.6263 -8.5151 -7.3146 19 6 4.5327 -9.0685 -8.1217 20 7 5.8379 -9.0391 -7.9524 21 14 3.8053 -9.8879 -9.6345 22 1 3.6745 -8.8878 -10.7245 23 1 4.6971 -10.9894 -10.0778 24 1 2.4661 -10.4379 -9.3040 25 6 0.7801 -6.0319 -3.1034 26 6 0.2800 -4.6474 -2.6312 27 1 0.4427 -3.8947 -3.4025 28 6 -1.1977 -4.7075 -2.2388 29 1 -0.3634 0.0020 1.0277 30 1 -0.3633 0.8890 -0.5155 31 1 -0.3634 -0.8909 -0.5121 32 1 4.5527 -1.0841 -0.0089 33 1 1.0703 -2.6829 0.6688 34 1 2.7603 -3.1431 0.3520 35 1 0.8232 -2.3611 -1.7274 36 1 2.4700 -5.9738 -0.7571 37 1 3.3038 -4.6430 -1.6086 38 1 2.3208 -6.4944 -5.5787 39 1 2.2432 -8.0421 -4.7029 40 1 6.4218 -9.4426 -8.6135 41 1 0.5754 -6.1725 -4.1647 42 1 0.3218 -6.8259 -2.5137 43 1 -1.4971 -3.7541 -1.8034 44 1 -1.8009 -4.9077 -3.1244 45 1 -1.3479 -5.5032 -1.5093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214173517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:41 Heat of formation + Delta-G solvation = 4.244300 kcal Electronic energy + Delta-G solvation = -26493.454750 eV Core-core repulsion = 22639.481882 eV Total energy + Delta-G solvation = -3853.972868 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.93147 -41.13275 -39.18932 -36.98210 -34.67995 -34.58688 -34.06219 -33.19979 -31.50025 -29.48629 -28.44752 -27.66735 -27.19277 -26.51072 -23.79051 -23.11624 -21.67936 -21.08472 -20.63304 -19.60671 -18.64706 -18.29673 -17.98490 -17.41883 -16.89239 -16.68695 -16.39618 -15.99492 -15.73859 -15.67612 -15.13995 -14.87783 -14.76800 -14.48861 -14.03516 -13.98308 -13.86893 -13.77302 -13.44338 -13.33655 -13.20653 -13.16148 -12.90288 -12.85069 -12.66657 -12.61322 -12.19896 -12.03798 -11.94633 -11.74386 -11.53271 -11.28901 -11.14809 -10.95669 -10.28790 -10.16241 -9.76721 -9.35670 -8.69195 -8.35082 -6.14194 0.50935 1.22037 1.24803 1.42641 1.44843 1.56064 1.57939 2.08926 2.22963 2.26891 2.98956 3.18721 3.23316 3.39145 3.47446 3.57029 3.70008 3.83303 3.89950 4.12623 4.18240 4.24275 4.27666 4.42109 4.45249 4.47819 4.58351 4.63756 4.65272 4.71851 4.78024 4.79255 4.82535 4.86538 4.96013 5.02329 5.08680 5.26162 5.28646 5.34374 5.40811 5.48833 6.03922 6.19165 6.41409 6.46850 7.05673 7.13537 7.30054 8.74322 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017610 B = 0.002141 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.639968 B =13075.052911 C =13826.557026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.020 4.020 3 O 0.082 5.918 4 N -0.403 5.403 5 C -0.007 4.007 6 C -0.207 4.207 7 C 0.143 3.857 8 N -0.691 5.691 9 C 0.094 3.906 10 H 0.096 0.904 11 C 0.107 3.893 12 N -0.618 5.618 13 C 0.547 3.453 14 O -0.571 6.571 15 C -0.117 4.117 16 S -0.155 6.155 17 C -0.544 4.544 18 H 0.084 0.916 19 C 0.011 3.989 20 N -0.912 5.912 21 Si 1.001 2.999 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.256 1.256 25 C 0.095 3.905 26 C -0.098 4.098 27 H 0.082 0.918 28 C -0.136 4.136 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.194 0.806 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.354 0.646 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.271 0.729 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.225 14.789 19.147 33.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.084 4.084 3 O 0.019 5.981 4 N -0.109 5.109 5 C -0.185 4.185 6 C -0.211 4.211 7 C 0.014 3.986 8 N -0.326 5.326 9 C -0.016 4.016 10 H 0.114 0.886 11 C -0.016 4.016 12 N -0.352 5.352 13 C 0.336 3.664 14 O -0.450 6.450 15 C -0.268 4.268 16 S 0.073 5.927 17 C -0.692 4.692 18 H 0.102 0.898 19 C -0.193 4.193 20 N -0.549 5.549 21 Si 0.822 3.178 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.180 1.180 25 C -0.027 4.027 26 C -0.118 4.118 27 H 0.101 0.899 28 C -0.194 4.194 29 H 0.126 0.874 30 H 0.114 0.886 31 H 0.124 0.876 32 H 0.211 0.789 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.175 0.825 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.115 0.885 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.790 15.816 19.337 31.870 hybrid contribution -1.473 -1.279 -0.983 2.184 sum -21.263 14.537 18.354 31.628 Atomic orbital electron populations 1.20600 0.80867 1.05968 1.05685 1.25078 0.97753 0.84987 1.00629 1.84761 1.11388 1.34150 1.67785 1.73888 0.97990 1.17854 1.21197 1.25285 1.01324 0.90047 1.01884 1.21155 0.91609 0.97874 1.10500 1.20159 1.01306 0.87402 0.89738 1.60353 1.47191 1.03008 1.22027 1.22440 0.92583 0.87407 0.99199 0.88630 1.22250 1.00049 0.94609 0.84737 1.48657 1.07430 1.56412 1.22709 1.19762 0.84268 0.78131 0.84287 1.90684 1.20869 1.59415 1.74029 1.23273 1.03527 1.03229 0.96764 1.85639 1.08913 1.73382 1.24814 1.23182 0.95878 1.42448 1.07678 0.89811 1.26178 0.95008 0.96182 1.01946 1.70199 1.04251 1.43699 1.36724 0.84920 0.78470 0.77700 0.76674 1.19294 1.20300 1.17969 1.22900 0.77920 0.98876 1.02988 1.22373 0.96419 0.96136 0.96871 0.89941 1.21754 0.91713 1.03419 1.02474 0.87442 0.88583 0.87594 0.78916 0.90620 0.90240 0.82536 0.91027 0.92524 0.87737 0.87455 0.91991 0.89763 0.88479 0.90579 0.91517 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.21 10.30 71.24 0.73 0.52 16 2 C -0.02 -0.26 7.49 25.04 0.19 -0.07 16 3 O 0.08 1.63 11.20 71.65 0.80 2.43 16 4 N -0.40 -9.65 12.07 -59.25 -0.72 -10.37 16 5 C -0.01 -0.15 12.16 85.71 1.04 0.90 16 6 C -0.21 -3.14 5.84 -19.73 -0.12 -3.26 16 7 C 0.14 1.57 5.85 85.56 0.50 2.07 16 8 N -0.69 -8.91 6.16 -490.99 -3.03 -11.94 16 9 C 0.09 1.15 2.89 45.81 0.13 1.28 16 10 H 0.10 0.65 7.57 -2.39 -0.02 0.63 16 11 C 0.11 2.41 6.67 86.53 0.58 2.99 16 12 N -0.62 -17.23 3.29 -810.08 -2.67 -19.89 16 13 C 0.55 21.95 7.91 87.66 0.69 22.65 16 14 O -0.57 -28.64 16.20 -3.04 -0.05 -28.69 16 15 C -0.12 -4.86 5.09 71.24 0.36 -4.50 16 16 S -0.15 -8.86 20.57 -56.49 -1.16 -10.02 16 17 C -0.54 -31.45 9.50 67.95 0.65 -30.80 16 18 H 0.08 4.47 7.80 -2.91 -0.02 4.44 16 19 C 0.01 0.66 5.49 84.86 0.47 1.12 16 20 N -0.91 -56.83 13.22 21.65 0.29 -56.55 16 21 Si 1.00 43.79 29.55 68.60 2.03 45.82 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 23 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 24 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 25 C 0.10 1.65 6.38 86.61 0.55 2.20 16 26 C -0.10 -1.12 3.11 -9.70 -0.03 -1.15 16 27 H 0.08 1.17 8.00 -2.39 -0.02 1.15 16 28 C -0.14 -0.64 9.16 71.99 0.66 0.02 16 29 H 0.11 -0.03 8.14 -2.38 -0.02 -0.05 16 30 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.11 -0.07 7.47 -2.39 -0.02 -0.09 16 32 H 0.19 3.55 8.06 -2.91 -0.02 3.53 16 33 H 0.08 0.41 8.08 -2.39 -0.02 0.39 16 34 H 0.08 1.05 8.11 -2.39 -0.02 1.03 16 35 H 0.35 3.31 7.82 -89.69 -0.70 2.61 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.06 1.65 7.84 -2.39 -0.02 1.63 16 38 H 0.10 3.97 7.90 -2.39 -0.02 3.95 16 39 H 0.11 4.01 8.14 -2.39 -0.02 4.00 16 40 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 41 H 0.08 1.50 7.23 -2.39 -0.02 1.48 16 42 H 0.10 1.28 8.01 -2.38 -0.02 1.26 16 43 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 44 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 45 H 0.07 0.25 8.10 -2.39 -0.02 0.23 16 Total: -1.00 -85.76 390.56 2.20 -83.56 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.30 Total: 11.67 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 6.41 Total: -6.03 kcal Atomic # 7 Polarization: -92.62 SS G_CDS: -6.12 Total: -98.75 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: 0.75 Total: -26.26 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.16 Total: -10.02 kcal Total: -85.76 2.20 -83.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214173517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.803 kcal (2) G-P(sol) polarization free energy of solvation -85.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds