Wall clock time and date at job start Tue Mar 31 2020 22:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35451 * 126.77279 * 2 1 4 4 C 1.41378 * 103.98546 * 180.02562 * 3 2 1 5 5 C 1.50708 * 126.80201 * 180.02562 * 4 3 2 6 6 N 1.46897 * 109.46932 * 94.98563 * 5 4 3 7 7 C 1.46841 * 111.00178 * 294.20655 * 6 5 4 8 8 C 1.53035 * 109.52468 * 174.16319 * 7 6 5 9 9 C 1.53117 * 109.27826 * 59.17981 * 8 7 6 10 10 N 1.46503 * 109.52117 * 182.44262 * 9 8 7 11 11 C 1.34778 * 119.99931 * 274.68403 * 10 9 8 12 12 O 1.21286 * 120.00195 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99976 * 180.02562 * 11 10 9 14 14 S 1.81000 * 109.47114 * 179.97438 * 13 11 10 15 15 C 1.76194 * 100.00061 * 180.02562 * 14 13 11 16 16 H 1.08005 * 120.00000 * 359.97438 * 15 14 13 17 17 C 1.38798 * 119.99859 * 180.02562 * 15 14 13 18 18 N 1.31630 * 120.00370 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99770 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47312 * 89.99786 * 19 17 15 21 21 H 1.48499 * 109.47073 * 209.99850 * 19 17 15 22 22 H 1.48504 * 109.47280 * 329.99789 * 19 17 15 23 23 C 1.53115 * 109.16091 * 302.34855 * 9 8 7 24 24 C 1.46851 * 110.99569 * 169.99757 * 6 5 4 25 25 N 1.30171 * 106.39621 * 0.02562 * 4 3 2 26 26 O 1.20923 * 111.60389 * 359.97438 * 25 4 3 27 27 H 1.09002 * 109.47047 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47490 * 299.99356 * 1 2 3 29 29 H 1.09003 * 109.47634 * 60.00311 * 1 2 3 30 30 H 1.08004 * 128.00906 * 359.97438 * 3 2 1 31 31 H 1.09009 * 109.46874 * 214.98762 * 5 4 3 32 32 H 1.09003 * 109.46761 * 334.98162 * 5 4 3 33 33 H 1.09000 * 109.46348 * 294.18153 * 7 6 5 34 34 H 1.09007 * 109.46151 * 54.14901 * 7 6 5 35 35 H 1.09010 * 109.50247 * 299.23924 * 8 7 6 36 36 H 1.09006 * 109.53742 * 179.14547 * 8 7 6 37 37 H 1.09002 * 109.57263 * 62.28286 * 9 8 7 38 38 H 0.96995 * 120.00287 * 94.68977 * 10 9 8 39 39 H 1.08994 * 109.46961 * 300.00046 * 13 11 10 40 40 H 1.08999 * 109.47185 * 59.99829 * 13 11 10 41 41 H 0.97001 * 119.99995 * 179.97438 * 18 17 15 42 42 H 1.09007 * 109.50402 * 297.70779 * 23 9 8 43 43 H 1.08998 * 109.53550 * 177.61810 * 23 9 8 44 44 H 1.09001 * 109.46644 * 305.85493 * 24 6 5 45 45 H 1.08998 * 109.46299 * 65.83645 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3178 1.0850 0.0000 4 6 3.6212 0.5374 -0.0006 5 6 4.9210 1.3003 -0.0003 6 7 5.4044 1.4434 1.3794 7 6 4.4983 2.2864 2.1698 8 6 4.9520 2.2946 3.6313 9 6 6.3827 2.8338 3.7135 10 7 6.8434 2.7895 5.1035 11 6 6.5571 3.8059 5.9411 12 8 5.9183 4.7574 5.5440 13 6 7.0315 3.7606 7.3708 14 16 6.4932 5.2583 8.2328 15 6 7.1647 4.9489 9.8321 16 1 7.7155 4.0390 10.0198 17 6 6.9850 5.8740 10.8511 18 7 6.3133 6.9828 10.6226 19 14 7.6963 5.5456 12.5469 20 1 9.0716 6.1005 12.6228 21 1 6.8436 6.1938 13.5754 22 1 7.7392 4.0813 12.7907 23 6 7.2972 1.9672 2.8434 24 6 6.7756 1.9685 1.4047 25 7 3.4763 -0.7562 -0.0015 26 8 2.3095 -1.0735 -0.0010 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 2.0343 2.1272 -0.0004 31 1 5.6604 0.7584 -0.5902 32 1 4.7628 2.2876 -0.4343 33 1 4.5150 3.3036 1.7786 34 1 3.4851 1.8895 2.1062 35 1 4.9224 1.2794 4.0273 36 1 4.2884 2.9324 4.2154 37 1 6.4063 3.8628 3.3545 38 1 7.3546 2.0288 5.4210 39 1 6.6110 2.8851 7.8655 40 1 8.1197 3.7015 7.3908 41 1 6.1874 7.6291 11.3349 42 1 7.3046 0.9469 3.2270 43 1 8.3095 2.3709 2.8639 44 1 7.4164 1.3407 0.7855 45 1 6.7816 2.9873 1.0173 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226144906.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:28 Heat of formation + Delta-G solvation = 21.258449 kcal Electronic energy + Delta-G solvation = -26199.979557 eV Core-core repulsion = 22346.744478 eV Total energy + Delta-G solvation = -3853.235079 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.21749 -39.94871 -38.55319 -35.66938 -34.20921 -33.57528 -32.42666 -31.64938 -31.11667 -29.07406 -28.16721 -26.85937 -25.47322 -23.56261 -23.44481 -23.01102 -20.40384 -20.22219 -19.94632 -17.98698 -17.80939 -17.49087 -16.66643 -16.29192 -15.66953 -15.54191 -15.12210 -14.80854 -14.79473 -14.47055 -14.18671 -14.02388 -13.79703 -13.68589 -13.49059 -13.23161 -12.99349 -12.84152 -12.62509 -12.56847 -12.30618 -11.92656 -11.60993 -11.45667 -11.36641 -11.06534 -11.02145 -10.89892 -10.79258 -10.71119 -10.42391 -9.80888 -9.63148 -9.36639 -9.06754 -8.85440 -8.70327 -8.23312 -6.49614 -6.21530 -3.91887 1.16008 1.85392 2.79226 3.04046 3.10743 3.22499 3.28124 3.32530 3.55874 3.72354 3.82280 4.12061 4.20784 4.50454 4.64485 4.67834 4.72404 4.81739 4.86729 4.94443 5.00205 5.05457 5.13069 5.13690 5.14942 5.18218 5.30156 5.33837 5.41477 5.43264 5.48226 5.56381 5.69235 5.70191 5.73016 5.82503 5.90857 6.02381 6.15236 6.20333 6.62772 6.69354 6.72664 7.59886 7.74867 7.99960 8.35510 8.63684 9.23867 10.85876 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021440 B = 0.001854 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.671598 B =15094.877253 C =15766.577597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.032 4.032 3 C -0.234 4.234 4 C 0.028 3.972 5 C 0.133 3.867 6 N -0.534 5.534 7 C 0.058 3.942 8 C -0.126 4.126 9 C 0.147 3.853 10 N -0.734 5.734 11 C 0.533 3.467 12 O -0.519 6.519 13 C -0.154 4.154 14 S -0.061 6.061 15 C -0.535 4.535 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C -0.123 4.123 24 C 0.062 3.938 25 N -0.349 5.349 26 O 0.099 5.901 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.169 0.831 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.398 0.602 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.367 -14.638 -24.810 29.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.096 4.096 3 C -0.255 4.255 4 C -0.131 4.131 5 C 0.005 3.995 6 N -0.260 5.260 7 C -0.070 4.070 8 C -0.165 4.165 9 C 0.041 3.959 10 N -0.388 5.388 11 C 0.319 3.681 12 O -0.393 6.393 13 C -0.304 4.304 14 S 0.166 5.834 15 C -0.683 4.683 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.197 1.197 23 C -0.161 4.161 24 C -0.066 4.066 25 N -0.052 5.052 26 O 0.031 5.969 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.187 0.813 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.232 0.768 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.628 -14.358 -25.183 29.736 hybrid contribution 1.061 -0.084 1.410 1.766 sum -5.568 -14.442 -23.773 28.367 Atomic orbital electron populations 1.20354 0.84021 1.04733 1.04193 1.24504 0.96422 0.86193 1.02465 1.22434 0.91487 1.01036 1.10579 1.23311 0.96707 0.90058 1.03057 1.20283 0.90954 0.97574 0.90706 1.61887 1.02478 1.51203 1.10405 1.22117 0.96508 0.94837 0.93574 1.21986 0.96939 1.02243 0.95376 1.20905 0.93094 1.00239 0.81614 1.46065 1.58515 1.23354 1.10825 1.20315 0.78934 0.81678 0.87157 1.90691 1.38465 1.33014 1.77129 1.23537 1.04396 1.07658 0.94852 1.85372 1.72219 1.18758 1.07065 1.22871 1.40587 1.08803 0.96073 0.90934 1.24995 0.95009 0.94478 0.99140 1.70019 1.38173 1.08637 1.33485 0.86167 0.78872 0.78535 0.81920 1.20276 1.20754 1.19692 1.21857 0.98919 1.01058 0.94279 1.22020 0.88907 0.98523 0.97150 1.73850 0.96616 1.16349 1.18401 1.84852 1.11401 1.33252 1.67376 0.89867 0.89029 0.89176 0.81318 0.88927 0.92266 0.94255 0.90498 0.91026 0.90482 0.89719 0.76831 0.89252 0.89262 0.92201 0.90427 0.90517 0.90081 0.94163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.26 10.45 36.00 0.38 0.11 16 2 C -0.03 -0.24 7.49 -35.31 -0.26 -0.51 16 3 C -0.23 -1.83 9.96 -39.38 -0.39 -2.22 16 4 C 0.03 0.27 6.01 -82.10 -0.49 -0.22 16 5 C 0.13 1.10 5.56 -4.97 -0.03 1.07 16 6 N -0.53 -5.01 4.65 -236.11 -1.10 -6.11 16 7 C 0.06 0.59 5.30 -3.84 -0.02 0.56 16 8 C -0.13 -1.51 5.67 -26.65 -0.15 -1.66 16 9 C 0.15 1.76 2.52 -67.81 -0.17 1.59 16 10 N -0.73 -9.91 5.08 -53.68 -0.27 -10.18 16 11 C 0.53 9.93 7.82 -10.98 -0.09 9.84 16 12 O -0.52 -11.67 15.52 5.55 0.09 -11.59 16 13 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 14 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 15 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 16 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 17 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 18 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 19 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 23 C -0.12 -1.10 5.57 -26.65 -0.15 -1.25 16 24 C 0.06 0.51 5.46 -3.83 -0.02 0.48 16 25 N -0.35 -4.01 12.07 33.42 0.40 -3.61 16 26 O 0.10 1.00 11.20 17.19 0.19 1.19 16 27 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.17 0.97 8.06 -52.48 -0.42 0.55 16 31 H 0.09 0.71 7.99 -51.92 -0.41 0.29 16 32 H 0.06 0.41 8.12 -51.93 -0.42 -0.02 16 33 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.79 6.25 -51.92 -0.32 0.46 16 35 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.08 1.18 7.58 -51.93 -0.39 0.79 16 38 H 0.40 4.28 8.61 -40.82 -0.35 3.93 16 39 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 40 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 41 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 0.56 8.02 -51.93 -0.42 0.14 16 45 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 386.43 15.07 5.82 5.82 Total: -1.00 -35.77 386.43 -9.29 -45.06 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.94 Total: 0.42 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -0.98 Total: -8.10 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: -0.23 Total: -45.40 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.28 Total: -10.40 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.77 -9.29 -45.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226144906.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.317 kcal (2) G-P(sol) polarization free energy of solvation -35.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds