Wall clock time and date at job start Tue Mar 31 2020 22:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35451 * 126.77279 * 2 1 4 4 C 1.41378 * 103.98546 * 180.02562 * 3 2 1 5 5 C 1.50708 * 126.80201 * 180.02562 * 4 3 2 6 6 N 1.46897 * 109.46932 * 94.98563 * 5 4 3 7 7 C 1.46841 * 111.00178 * 294.20655 * 6 5 4 8 8 C 1.53035 * 109.52468 * 174.16319 * 7 6 5 9 9 C 1.53117 * 109.27826 * 59.17981 * 8 7 6 10 10 N 1.46503 * 109.52117 * 182.44262 * 9 8 7 11 11 C 1.34778 * 119.99931 * 274.68403 * 10 9 8 12 12 O 1.21286 * 120.00195 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99976 * 180.02562 * 11 10 9 14 14 S 1.81000 * 109.47114 * 179.97438 * 13 11 10 15 15 C 1.76194 * 100.00061 * 180.02562 * 14 13 11 16 16 H 1.08005 * 120.00000 * 359.97438 * 15 14 13 17 17 C 1.38798 * 119.99859 * 180.02562 * 15 14 13 18 18 N 1.31630 * 120.00370 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99770 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47312 * 89.99786 * 19 17 15 21 21 H 1.48499 * 109.47073 * 209.99850 * 19 17 15 22 22 H 1.48504 * 109.47280 * 329.99789 * 19 17 15 23 23 C 1.53115 * 109.16091 * 302.34855 * 9 8 7 24 24 C 1.46851 * 110.99569 * 169.99757 * 6 5 4 25 25 N 1.30171 * 106.39621 * 0.02562 * 4 3 2 26 26 O 1.20923 * 111.60389 * 359.97438 * 25 4 3 27 27 H 1.09002 * 109.47047 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47490 * 299.99356 * 1 2 3 29 29 H 1.09003 * 109.47634 * 60.00311 * 1 2 3 30 30 H 1.08004 * 128.00906 * 359.97438 * 3 2 1 31 31 H 1.09009 * 109.46874 * 214.98762 * 5 4 3 32 32 H 1.09003 * 109.46761 * 334.98162 * 5 4 3 33 33 H 1.09000 * 109.46348 * 294.18153 * 7 6 5 34 34 H 1.09007 * 109.46151 * 54.14901 * 7 6 5 35 35 H 1.09010 * 109.50247 * 299.23924 * 8 7 6 36 36 H 1.09006 * 109.53742 * 179.14547 * 8 7 6 37 37 H 1.09002 * 109.57263 * 62.28286 * 9 8 7 38 38 H 0.96995 * 120.00287 * 94.68977 * 10 9 8 39 39 H 1.08994 * 109.46961 * 300.00046 * 13 11 10 40 40 H 1.08999 * 109.47185 * 59.99829 * 13 11 10 41 41 H 0.97001 * 119.99995 * 179.97438 * 18 17 15 42 42 H 1.09007 * 109.50402 * 297.70779 * 23 9 8 43 43 H 1.08998 * 109.53550 * 177.61810 * 23 9 8 44 44 H 1.09001 * 109.46644 * 305.85493 * 24 6 5 45 45 H 1.08998 * 109.46299 * 65.83645 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3178 1.0850 0.0000 4 6 3.6212 0.5374 -0.0006 5 6 4.9210 1.3003 -0.0003 6 7 5.4044 1.4434 1.3794 7 6 4.4983 2.2864 2.1698 8 6 4.9520 2.2946 3.6313 9 6 6.3827 2.8338 3.7135 10 7 6.8434 2.7895 5.1035 11 6 6.5571 3.8059 5.9411 12 8 5.9183 4.7574 5.5440 13 6 7.0315 3.7606 7.3708 14 16 6.4932 5.2583 8.2328 15 6 7.1647 4.9489 9.8321 16 1 7.7155 4.0390 10.0198 17 6 6.9850 5.8740 10.8511 18 7 6.3133 6.9828 10.6226 19 14 7.6963 5.5456 12.5469 20 1 9.0716 6.1005 12.6228 21 1 6.8436 6.1938 13.5754 22 1 7.7392 4.0813 12.7907 23 6 7.2972 1.9672 2.8434 24 6 6.7756 1.9685 1.4047 25 7 3.4763 -0.7562 -0.0015 26 8 2.3095 -1.0735 -0.0010 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 2.0343 2.1272 -0.0004 31 1 5.6604 0.7584 -0.5902 32 1 4.7628 2.2876 -0.4343 33 1 4.5150 3.3036 1.7786 34 1 3.4851 1.8895 2.1062 35 1 4.9224 1.2794 4.0273 36 1 4.2884 2.9324 4.2154 37 1 6.4063 3.8628 3.3545 38 1 7.3546 2.0288 5.4210 39 1 6.6110 2.8851 7.8655 40 1 8.1197 3.7015 7.3908 41 1 6.1874 7.6291 11.3349 42 1 7.3046 0.9469 3.2270 43 1 8.3095 2.3709 2.8639 44 1 7.4164 1.3407 0.7855 45 1 6.7816 2.9873 1.0173 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226144906.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:27 Heat of formation + Delta-G solvation = -4.256974 kcal Electronic energy + Delta-G solvation = -26201.085989 eV Core-core repulsion = 22346.744478 eV Total energy + Delta-G solvation = -3854.341511 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.88612 -41.08089 -39.67092 -36.64274 -35.01825 -34.58997 -34.21599 -32.75030 -31.91131 -30.48624 -28.62601 -27.83283 -27.50910 -24.36010 -24.26711 -23.77420 -21.66160 -21.15081 -20.69240 -19.78738 -18.66993 -18.12791 -17.81595 -17.69158 -16.88624 -16.64984 -16.41846 -16.25947 -15.88167 -15.64526 -15.17302 -14.86911 -14.71865 -14.56913 -14.53406 -14.25307 -13.95835 -13.66673 -13.61155 -13.44378 -13.19350 -13.17205 -12.92268 -12.88537 -12.66424 -12.45127 -12.24872 -12.07255 -11.79297 -11.72676 -11.61030 -11.14874 -11.13284 -10.90280 -10.28584 -10.22575 -10.08466 -9.40917 -8.67202 -8.35298 -6.13277 0.55144 1.21251 1.26506 1.41986 1.46484 1.57134 1.60972 2.24825 2.26393 2.28961 2.87688 2.98726 3.19021 3.31205 3.56782 3.67258 3.79723 3.95379 4.03299 4.12442 4.14877 4.26331 4.28103 4.30755 4.39258 4.43678 4.50243 4.55738 4.60276 4.63292 4.66977 4.73709 4.84108 4.88043 4.93316 4.98871 5.02871 5.11356 5.23184 5.26654 5.41296 5.51229 5.92538 6.00703 6.19260 6.51802 7.05993 7.24960 7.35195 8.73875 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021440 B = 0.001854 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.671598 B =15094.877253 C =15766.577597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.029 4.029 3 C -0.244 4.244 4 C 0.020 3.980 5 C 0.134 3.866 6 N -0.543 5.543 7 C 0.067 3.933 8 C -0.121 4.121 9 C 0.146 3.854 10 N -0.710 5.710 11 C 0.535 3.465 12 O -0.564 6.564 13 C -0.130 4.130 14 S -0.150 6.150 15 C -0.547 4.547 16 H 0.082 0.918 17 C 0.013 3.987 18 N -0.911 5.911 19 Si 0.999 3.001 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.259 1.259 23 C -0.113 4.113 24 C 0.062 3.938 25 N -0.385 5.385 26 O 0.081 5.919 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.188 0.812 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.065 0.935 38 H 0.415 0.585 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.271 0.729 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.515 -16.289 -25.266 30.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.092 4.092 3 C -0.266 4.266 4 C -0.139 4.139 5 C 0.006 3.994 6 N -0.269 5.269 7 C -0.062 4.062 8 C -0.160 4.160 9 C 0.041 3.959 10 N -0.363 5.363 11 C 0.321 3.679 12 O -0.442 6.442 13 C -0.282 4.282 14 S 0.077 5.923 15 C -0.695 4.695 16 H 0.100 0.900 17 C -0.192 4.192 18 N -0.547 5.547 19 Si 0.820 3.180 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.183 1.183 23 C -0.151 4.151 24 C -0.066 4.066 25 N -0.091 5.091 26 O 0.016 5.984 27 H 0.110 0.890 28 H 0.120 0.880 29 H 0.128 0.872 30 H 0.205 0.795 31 H 0.118 0.882 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.252 0.748 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.109 0.891 44 H 0.119 0.881 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.769 -16.070 -25.670 30.830 hybrid contribution 0.750 0.364 1.429 1.654 sum -5.019 -15.707 -24.242 29.318 Atomic orbital electron populations 1.20563 0.81292 1.05791 1.05560 1.25225 0.97878 0.85427 1.00690 1.22726 0.90888 1.02073 1.10914 1.23675 0.97931 0.89890 1.02423 1.20362 0.90657 0.98292 0.90102 1.61857 1.02861 1.51043 1.11107 1.21963 0.96645 0.95128 0.92440 1.21879 0.96334 1.01302 0.96458 1.21045 0.94050 1.00018 0.80745 1.45845 1.57194 1.22288 1.10931 1.20055 0.78647 0.82187 0.86982 1.90682 1.40736 1.35096 1.77703 1.23382 1.05511 1.04054 0.95209 1.85543 1.73535 1.24364 1.08842 1.23206 1.40642 1.09296 0.96313 0.89966 1.26135 0.95178 0.94022 1.03877 1.70182 1.39661 1.09840 1.35042 0.84950 0.78126 0.79039 0.75842 1.19262 1.20267 1.18256 1.21815 0.98694 1.00544 0.94046 1.22090 0.88462 0.99271 0.96745 1.73834 0.97479 1.17448 1.20364 1.84801 1.11429 1.34307 1.67853 0.89020 0.87962 0.87244 0.79505 0.88229 0.90668 0.94151 0.90705 0.91127 0.93287 0.91687 0.74773 0.87451 0.87203 0.91984 0.89755 0.89143 0.88086 0.93715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.45 71.23 0.74 0.36 16 2 C -0.03 -0.40 7.49 25.04 0.19 -0.21 16 3 C -0.24 -3.55 9.96 22.40 0.22 -3.33 16 4 C 0.02 0.37 6.01 43.58 0.26 0.63 16 5 C 0.13 2.00 5.56 85.56 0.48 2.47 16 6 N -0.54 -9.28 4.65 -900.91 -4.19 -13.46 16 7 C 0.07 1.30 5.30 86.33 0.46 1.76 16 8 C -0.12 -2.84 5.67 30.65 0.17 -2.67 16 9 C 0.15 3.35 2.52 45.07 0.11 3.46 16 10 N -0.71 -18.18 5.08 -442.15 -2.25 -20.42 16 11 C 0.54 19.83 7.82 87.66 0.69 20.51 16 12 O -0.56 -26.08 15.52 -3.05 -0.05 -26.13 16 13 C -0.13 -5.20 6.16 71.24 0.44 -4.76 16 14 S -0.15 -8.37 20.57 -56.49 -1.16 -9.54 16 15 C -0.55 -31.39 9.50 67.95 0.65 -30.74 16 16 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 17 C 0.01 0.72 5.49 84.86 0.47 1.19 16 18 N -0.91 -56.12 13.22 21.65 0.29 -55.83 16 19 Si 1.00 43.75 29.55 68.60 2.03 45.78 16 20 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 21 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 22 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 23 C -0.11 -1.74 5.57 30.64 0.17 -1.57 16 24 C 0.06 0.86 5.46 86.32 0.47 1.33 16 25 N -0.38 -8.77 12.07 -49.56 -0.60 -9.37 16 26 O 0.08 1.62 11.20 71.69 0.80 2.42 16 27 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.19 1.85 8.06 -2.91 -0.02 1.83 16 31 H 0.10 1.34 7.99 -2.38 -0.02 1.32 16 32 H 0.08 0.88 8.12 -2.39 -0.02 0.86 16 33 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 1.49 6.25 -2.38 -0.01 1.47 16 35 H 0.07 1.66 8.14 -2.38 -0.02 1.65 16 36 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.06 1.80 7.58 -2.39 -0.02 1.79 16 38 H 0.42 7.87 8.61 -92.71 -0.80 7.07 16 39 H 0.11 3.89 8.14 -2.40 -0.02 3.88 16 40 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 41 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 42 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 43 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.10 1.06 8.02 -2.39 -0.02 1.04 16 45 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -80.47 386.43 0.59 -79.88 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.20 Total: 18.24 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 5.51 Total: -11.57 kcal Atomic # 7 Polarization: -92.34 SS G_CDS: -6.75 Total: -99.08 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: 0.76 Total: -23.71 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.54 kcal Total: -80.47 0.59 -79.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226144906.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.624 kcal (2) G-P(sol) polarization free energy of solvation -80.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds