Wall clock time and date at job start Tue Mar 31 2020 22:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35453 * 128.00618 * 2 1 4 4 O 1.34038 * 106.44217 * 180.02562 * 3 2 1 5 5 N 1.20918 * 111.56858 * 359.70900 * 4 3 2 6 6 C 1.30174 * 111.60696 * 0.48340 * 5 4 3 7 7 C 1.50697 * 126.80439 * 179.79732 * 6 5 4 8 8 N 1.46899 * 109.47317 * 274.68061 * 7 6 5 9 9 C 1.47473 * 111.00359 * 65.54594 * 8 7 6 10 10 C 1.53506 * 87.93341 * 138.70354 * 9 8 7 11 11 C 1.47477 * 111.00159 * 161.51939 * 8 7 6 12 12 H 1.09000 * 113.47563 * 336.06188 * 11 8 7 13 13 C 1.53001 * 113.47491 * 106.52675 * 11 8 7 14 14 N 1.46499 * 109.47550 * 303.18930 * 13 11 8 15 15 C 1.46499 * 120.00151 * 275.86764 * 14 13 11 16 16 C 1.34780 * 119.99722 * 95.86360 * 14 13 11 17 17 O 1.21273 * 120.00311 * 4.70947 * 16 14 13 18 18 C 1.50702 * 119.99646 * 184.70335 * 16 14 13 19 19 S 1.81001 * 109.47108 * 186.00435 * 18 16 14 20 20 C 1.76193 * 100.00220 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99923 * 0.02562 * 20 19 18 22 22 C 1.38806 * 120.00195 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99678 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00016 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46951 * 89.99848 * 24 22 20 26 26 H 1.48501 * 109.46743 * 209.99876 * 24 22 20 27 27 H 1.48496 * 109.47139 * 330.00037 * 24 22 20 28 28 H 1.09004 * 109.47370 * 274.60773 * 1 2 3 29 29 H 1.09000 * 109.47229 * 34.60428 * 1 2 3 30 30 H 1.08999 * 109.47367 * 154.61383 * 1 2 3 31 31 H 1.07999 * 126.77554 * 0.05243 * 3 2 1 32 32 H 1.09007 * 109.47349 * 154.67715 * 7 6 5 33 33 H 1.09006 * 109.47332 * 34.68079 * 7 6 5 34 34 H 1.08997 * 113.48032 * 253.47626 * 9 8 7 35 35 H 1.09002 * 113.47311 * 23.87882 * 9 8 7 36 36 H 1.08999 * 114.16689 * 87.62651 * 10 9 8 37 37 H 1.09002 * 114.17225 * 220.13872 * 10 9 8 38 38 H 1.09003 * 109.47107 * 63.19399 * 13 11 8 39 39 H 1.09007 * 109.47253 * 183.19058 * 13 11 8 40 40 H 1.09005 * 109.46771 * 89.99469 * 15 14 13 41 41 H 1.08996 * 109.46979 * 209.99484 * 15 14 13 42 42 H 1.09000 * 109.47261 * 330.00191 * 15 14 13 43 43 H 1.08998 * 109.47216 * 306.00004 * 18 16 14 44 44 H 1.08998 * 109.46929 * 66.00363 * 18 16 14 45 45 H 0.97004 * 119.99876 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3410 1.0673 0.0000 4 8 3.5876 0.5746 -0.0006 5 7 3.5877 -0.6345 0.0048 6 6 2.3775 -1.1140 -0.0006 7 6 1.9826 -2.5683 -0.0008 8 7 1.9701 -3.0721 -1.3807 9 6 3.3273 -3.0663 -1.9578 10 6 3.0082 -4.4327 -2.5804 11 6 2.0262 -4.5456 -1.4059 12 1 2.4697 -4.9787 -0.5093 13 6 0.6959 -5.1998 -1.7843 14 7 -0.3478 -4.7560 -0.8570 15 6 -0.5208 -5.4340 0.4301 16 6 -1.1489 -3.7239 -1.1880 17 8 -1.0631 -3.2177 -2.2868 18 6 -2.1514 -3.1989 -0.1928 19 16 -3.1876 -1.9439 -0.9850 20 6 -4.2353 -1.5154 0.3652 21 1 -4.1105 -2.0022 1.3212 22 6 -5.2211 -0.5522 0.2003 23 7 -5.3728 0.0414 -0.9647 24 14 -6.3324 -0.0984 1.6316 25 1 -5.7206 1.0158 2.3993 26 1 -7.6578 0.3263 1.1138 27 1 -6.5021 -1.2766 2.5194 28 1 -0.3634 0.0826 1.0244 29 1 -0.3634 0.8459 -0.5836 30 1 -0.3634 -0.9284 -0.4406 31 1 2.0576 2.1094 0.0008 32 1 0.9888 -2.6751 0.4340 33 1 2.7001 -3.1398 0.5881 34 1 3.4823 -2.2787 -2.6951 35 1 4.1179 -3.1036 -1.2084 36 1 2.5299 -4.3768 -3.5582 37 1 3.8342 -5.1430 -2.5453 38 1 0.4256 -4.9121 -2.8003 39 1 0.7950 -6.2839 -1.7279 40 1 0.0998 -4.9481 1.1830 41 1 -1.5669 -5.3800 0.7314 42 1 -0.2239 -6.4784 0.3334 43 1 -2.7781 -4.0186 0.1585 44 1 -1.6257 -2.7552 0.6527 45 1 -6.0615 0.7148 -1.0799 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230814293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:40 Heat of formation + Delta-G solvation = 71.334089 kcal Electronic energy + Delta-G solvation = -28419.763961 eV Core-core repulsion = 24568.700324 eV Total energy + Delta-G solvation = -3851.063636 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.81819 -40.59188 -38.85177 -35.29901 -34.92361 -32.45462 -32.43101 -30.73808 -29.92269 -28.03398 -27.69818 -26.25485 -25.46628 -25.17553 -23.24234 -21.42744 -20.98575 -19.79936 -19.13787 -17.65566 -17.51528 -17.37863 -16.56166 -16.22227 -15.91680 -15.74225 -14.81507 -14.79134 -14.60168 -14.32464 -13.86127 -13.42175 -13.08197 -12.99523 -12.85627 -12.82767 -12.77902 -12.62367 -12.34701 -12.08122 -11.93967 -11.74307 -11.70439 -11.46480 -11.24144 -11.07531 -11.02068 -10.82688 -10.76497 -10.67656 -9.90915 -9.79507 -9.19965 -9.14563 -9.06721 -8.95764 -8.34995 -8.19781 -6.48260 -6.22074 -3.91583 1.59152 2.28667 2.98988 3.19829 3.21507 3.26236 3.29419 3.37184 3.62460 3.94356 4.15672 4.20336 4.34199 4.55514 4.67676 4.90928 5.05920 5.08364 5.12905 5.14286 5.19326 5.19562 5.27213 5.29255 5.43720 5.44643 5.50914 5.58470 5.60018 5.68926 5.72217 5.81155 5.93513 5.94647 6.02780 6.07670 6.09500 6.15713 6.22500 6.30333 6.74999 6.76959 6.95251 7.59020 7.66241 8.32770 8.34727 8.72886 9.23655 10.84989 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010965 B = 0.004194 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.881827 B = 6674.001483 C = 8451.367461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.168 4.168 3 C -0.079 4.079 4 O 0.094 5.906 5 N -0.368 5.368 6 C 0.023 3.977 7 C 0.106 3.894 8 N -0.437 5.437 9 C 0.000 4.000 10 C -0.136 4.136 11 C 0.011 3.989 12 H 0.076 0.924 13 C 0.134 3.866 14 N -0.624 5.624 15 C 0.081 3.919 16 C 0.535 3.465 17 O -0.498 6.498 18 C -0.152 4.152 19 S -0.053 6.053 20 C -0.535 4.535 21 H 0.070 0.930 22 C 0.076 3.924 23 N -0.867 5.867 24 Si 0.914 3.086 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.273 1.273 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.215 0.785 32 H 0.096 0.904 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.047 0.953 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.787 -8.036 3.022 18.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.172 4.172 3 C -0.159 4.159 4 O 0.028 5.972 5 N -0.072 5.072 6 C -0.136 4.136 7 C -0.023 4.023 8 N -0.161 5.161 9 C -0.129 4.129 10 C -0.174 4.174 11 C -0.099 4.099 12 H 0.094 0.906 13 C 0.011 3.989 14 N -0.361 5.361 15 C -0.063 4.063 16 C 0.323 3.677 17 O -0.370 6.370 18 C -0.303 4.303 19 S 0.174 5.826 20 C -0.683 4.683 21 H 0.088 0.912 22 C -0.133 4.133 23 N -0.502 5.502 24 Si 0.740 3.260 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.198 1.198 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.232 0.768 32 H 0.114 0.886 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.116 0.884 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 17.377 -7.387 0.970 18.906 hybrid contribution -0.939 -0.281 3.031 3.185 sum 16.438 -7.667 4.001 18.574 Atomic orbital electron populations 1.20236 0.85553 1.05428 1.02669 1.21591 0.99512 0.91019 1.05096 1.25742 0.82847 1.01274 1.06073 1.84742 1.29384 1.15370 1.67718 1.73748 1.22384 0.91646 1.19470 1.23208 0.88701 0.98040 1.03645 1.20892 1.01779 0.87403 0.92251 1.69190 1.23689 1.08432 1.14745 1.23687 0.91662 0.98212 0.99339 1.23159 0.98547 0.97000 0.98677 1.23902 0.96876 0.90583 0.98575 0.90620 1.21370 0.84976 0.97145 0.95443 1.47740 1.34771 1.34612 1.18950 1.21745 1.02536 0.96888 0.85148 1.20139 0.80532 0.78815 0.88255 1.90699 1.67737 1.56382 1.22185 1.23615 1.00492 1.04611 1.01590 1.85405 1.36302 1.43697 1.17234 1.22858 1.20240 1.26794 0.98394 0.91151 1.24945 0.96733 0.95224 0.96439 1.70015 1.32580 1.25014 1.22597 0.86243 0.79534 0.78796 0.81391 1.20310 1.20801 1.19755 0.91031 0.90572 0.89320 0.76848 0.88573 0.93037 0.90052 0.91375 0.88433 0.90617 0.88726 0.90834 0.93447 0.90727 0.91519 0.89803 0.89702 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.34 10.32 36.01 0.37 -0.96 16 2 C -0.17 -2.51 6.32 -104.42 -0.66 -3.17 16 3 C -0.08 -0.98 12.26 29.74 0.36 -0.61 16 4 O 0.09 1.29 11.20 17.18 0.19 1.49 16 5 N -0.37 -5.49 11.87 33.42 0.40 -5.09 16 6 C 0.02 0.35 6.24 -82.10 -0.51 -0.17 16 7 C 0.11 1.45 5.46 -4.98 -0.03 1.42 16 8 N -0.44 -6.01 5.92 -237.99 -1.41 -7.42 16 9 C 0.00 0.00 6.88 -7.56 -0.05 -0.05 16 10 C -0.14 -1.31 8.00 -26.21 -0.21 -1.52 16 11 C 0.01 0.12 3.35 -71.45 -0.24 -0.12 16 12 H 0.08 0.71 7.63 -51.93 -0.40 0.32 16 13 C 0.13 1.55 5.67 -4.04 -0.02 1.53 16 14 N -0.62 -8.38 2.79 -181.57 -0.51 -8.89 16 15 C 0.08 0.80 10.25 59.85 0.61 1.42 16 16 C 0.54 9.73 7.35 -10.98 -0.08 9.64 16 17 O -0.50 -10.96 15.35 5.56 0.09 -10.87 16 18 C -0.15 -2.97 5.01 36.01 0.18 -2.79 16 19 S -0.05 -1.37 20.58 -107.50 -2.21 -3.58 16 20 C -0.53 -14.59 9.50 30.94 0.29 -14.30 16 21 H 0.07 1.84 7.80 -52.48 -0.41 1.43 16 22 C 0.08 2.09 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -25.37 13.22 55.49 0.73 -24.63 16 24 Si 0.91 20.86 29.55 -169.99 -5.02 15.84 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.09 1.69 8.03 -51.93 -0.42 1.27 16 31 H 0.22 1.80 8.06 -52.49 -0.42 1.38 16 32 H 0.10 1.40 7.91 -51.93 -0.41 0.99 16 33 H 0.05 0.64 7.56 -51.93 -0.39 0.24 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.07 0.80 7.84 -51.93 -0.41 0.39 16 36 H 0.10 0.99 7.96 -51.93 -0.41 0.58 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 1.32 6.97 -51.93 -0.36 0.96 16 39 H 0.07 0.63 7.98 -51.93 -0.41 0.22 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.78 6.31 -51.93 -0.33 0.45 16 42 H 0.07 0.50 7.95 -51.93 -0.41 0.08 16 43 H 0.08 1.53 6.93 -51.92 -0.36 1.17 16 44 H 0.08 1.55 8.14 -51.92 -0.42 1.13 16 45 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 390.01 15.07 5.88 5.88 Total: -1.00 -33.76 390.01 -8.76 -42.52 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.82 Total: 2.45 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -0.08 Total: -7.68 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: -0.78 Total: -46.03 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.28 Total: -9.39 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -2.21 Total: -3.58 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.76 -8.76 -42.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230814293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.852 kcal (2) G-P(sol) polarization free energy of solvation -33.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds