Wall clock time and date at job start Tue Mar 31 2020 22:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35453 * 128.00618 * 2 1 4 4 O 1.34038 * 106.44217 * 180.02562 * 3 2 1 5 5 N 1.20918 * 111.56858 * 359.70900 * 4 3 2 6 6 C 1.30174 * 111.60696 * 0.48340 * 5 4 3 7 7 C 1.50697 * 126.80439 * 179.79732 * 6 5 4 8 8 N 1.46899 * 109.47317 * 274.68061 * 7 6 5 9 9 C 1.47473 * 111.00359 * 65.54594 * 8 7 6 10 10 C 1.53506 * 87.93341 * 138.70354 * 9 8 7 11 11 C 1.47477 * 111.00159 * 161.51939 * 8 7 6 12 12 H 1.09000 * 113.47563 * 336.06188 * 11 8 7 13 13 C 1.53001 * 113.47491 * 106.52675 * 11 8 7 14 14 N 1.46499 * 109.47550 * 303.18930 * 13 11 8 15 15 C 1.46499 * 120.00151 * 275.86764 * 14 13 11 16 16 C 1.34780 * 119.99722 * 95.86360 * 14 13 11 17 17 O 1.21273 * 120.00311 * 4.70947 * 16 14 13 18 18 C 1.50702 * 119.99646 * 184.70335 * 16 14 13 19 19 S 1.81001 * 109.47108 * 186.00435 * 18 16 14 20 20 C 1.76193 * 100.00220 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99923 * 0.02562 * 20 19 18 22 22 C 1.38806 * 120.00195 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99678 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00016 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46951 * 89.99848 * 24 22 20 26 26 H 1.48501 * 109.46743 * 209.99876 * 24 22 20 27 27 H 1.48496 * 109.47139 * 330.00037 * 24 22 20 28 28 H 1.09004 * 109.47370 * 274.60773 * 1 2 3 29 29 H 1.09000 * 109.47229 * 34.60428 * 1 2 3 30 30 H 1.08999 * 109.47367 * 154.61383 * 1 2 3 31 31 H 1.07999 * 126.77554 * 0.05243 * 3 2 1 32 32 H 1.09007 * 109.47349 * 154.67715 * 7 6 5 33 33 H 1.09006 * 109.47332 * 34.68079 * 7 6 5 34 34 H 1.08997 * 113.48032 * 253.47626 * 9 8 7 35 35 H 1.09002 * 113.47311 * 23.87882 * 9 8 7 36 36 H 1.08999 * 114.16689 * 87.62651 * 10 9 8 37 37 H 1.09002 * 114.17225 * 220.13872 * 10 9 8 38 38 H 1.09003 * 109.47107 * 63.19399 * 13 11 8 39 39 H 1.09007 * 109.47253 * 183.19058 * 13 11 8 40 40 H 1.09005 * 109.46771 * 89.99469 * 15 14 13 41 41 H 1.08996 * 109.46979 * 209.99484 * 15 14 13 42 42 H 1.09000 * 109.47261 * 330.00191 * 15 14 13 43 43 H 1.08998 * 109.47216 * 306.00004 * 18 16 14 44 44 H 1.08998 * 109.46929 * 66.00363 * 18 16 14 45 45 H 0.97004 * 119.99876 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3410 1.0673 0.0000 4 8 3.5876 0.5746 -0.0006 5 7 3.5877 -0.6345 0.0048 6 6 2.3775 -1.1140 -0.0006 7 6 1.9826 -2.5683 -0.0008 8 7 1.9701 -3.0721 -1.3807 9 6 3.3273 -3.0663 -1.9578 10 6 3.0082 -4.4327 -2.5804 11 6 2.0262 -4.5456 -1.4059 12 1 2.4697 -4.9787 -0.5093 13 6 0.6959 -5.1998 -1.7843 14 7 -0.3478 -4.7560 -0.8570 15 6 -0.5208 -5.4340 0.4301 16 6 -1.1489 -3.7239 -1.1880 17 8 -1.0631 -3.2177 -2.2868 18 6 -2.1514 -3.1989 -0.1928 19 16 -3.1876 -1.9439 -0.9850 20 6 -4.2353 -1.5154 0.3652 21 1 -4.1105 -2.0022 1.3212 22 6 -5.2211 -0.5522 0.2003 23 7 -5.3728 0.0414 -0.9647 24 14 -6.3324 -0.0984 1.6316 25 1 -5.7206 1.0158 2.3993 26 1 -7.6578 0.3263 1.1138 27 1 -6.5021 -1.2766 2.5194 28 1 -0.3634 0.0826 1.0244 29 1 -0.3634 0.8459 -0.5836 30 1 -0.3634 -0.9284 -0.4406 31 1 2.0576 2.1094 0.0008 32 1 0.9888 -2.6751 0.4340 33 1 2.7001 -3.1398 0.5881 34 1 3.4823 -2.2787 -2.6951 35 1 4.1179 -3.1036 -1.2084 36 1 2.5299 -4.3768 -3.5582 37 1 3.8342 -5.1430 -2.5453 38 1 0.4256 -4.9121 -2.8003 39 1 0.7950 -6.2839 -1.7279 40 1 0.0998 -4.9481 1.1830 41 1 -1.5669 -5.3800 0.7314 42 1 -0.2239 -6.4784 0.3334 43 1 -2.7781 -4.0186 0.1585 44 1 -1.6257 -2.7552 0.6527 45 1 -6.0615 0.7148 -1.0799 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230814293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:40 Heat of formation + Delta-G solvation = 48.018982 kcal Electronic energy + Delta-G solvation = -28420.774980 eV Core-core repulsion = 24568.700324 eV Total energy + Delta-G solvation = -3852.074655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.93171 -41.58159 -40.13777 -36.47781 -36.08703 -34.52899 -33.56421 -31.91191 -31.08001 -29.19033 -28.93103 -27.62206 -27.19489 -26.16801 -24.26518 -22.57490 -22.03652 -20.78719 -20.43369 -19.44473 -18.63666 -18.46086 -17.88590 -17.29963 -17.06869 -16.83711 -16.80640 -15.99330 -15.83564 -15.68715 -15.25486 -14.61126 -14.41657 -14.17479 -14.11629 -14.09839 -13.93905 -13.85288 -13.46340 -13.23114 -13.13242 -13.07368 -12.87663 -12.80096 -12.67020 -12.55687 -12.44803 -12.28590 -11.89256 -11.67125 -11.59955 -11.09650 -10.98895 -10.65679 -10.27482 -10.16517 -9.93322 -9.42478 -8.56226 -8.29423 -6.04349 0.52601 1.15267 1.31341 1.42777 1.49604 1.60128 1.80353 2.23169 2.32995 2.35253 2.96593 3.04703 3.13194 3.36100 3.40644 3.57785 3.80894 3.85481 3.98318 4.13428 4.20537 4.21375 4.26049 4.30489 4.36002 4.39369 4.42733 4.54195 4.58621 4.68386 4.73443 4.76230 4.81374 4.91227 4.93570 4.96327 4.98146 4.98769 5.20058 5.28449 5.39652 5.46696 5.74051 6.03282 6.24649 6.44822 7.12639 7.23978 7.37955 8.79111 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010965 B = 0.004194 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.881827 B = 6674.001483 C = 8451.367461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.203 4.203 3 C -0.052 4.052 4 O 0.094 5.906 5 N -0.380 5.380 6 C 0.015 3.985 7 C 0.112 3.888 8 N -0.472 5.472 9 C 0.001 3.999 10 C -0.119 4.119 11 C 0.017 3.983 12 H 0.101 0.899 13 C 0.132 3.868 14 N -0.612 5.612 15 C 0.072 3.928 16 C 0.537 3.463 17 O -0.547 6.547 18 C -0.127 4.127 19 S -0.129 6.129 20 C -0.542 4.542 21 H 0.077 0.923 22 C 0.020 3.980 23 N -0.909 5.909 24 Si 0.988 3.012 25 H -0.268 1.268 26 H -0.280 1.280 27 H -0.261 1.261 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.254 0.746 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.115 0.885 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.124 -9.640 5.117 21.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.207 4.207 3 C -0.133 4.133 4 O 0.029 5.971 5 N -0.086 5.086 6 C -0.144 4.144 7 C -0.017 4.017 8 N -0.196 5.196 9 C -0.128 4.128 10 C -0.157 4.157 11 C -0.093 4.093 12 H 0.119 0.881 13 C 0.009 3.991 14 N -0.346 5.346 15 C -0.070 4.070 16 C 0.324 3.676 17 O -0.423 6.423 18 C -0.278 4.278 19 S 0.098 5.902 20 C -0.690 4.690 21 H 0.095 0.905 22 C -0.185 4.185 23 N -0.546 5.546 24 Si 0.811 3.189 25 H -0.193 1.193 26 H -0.205 1.205 27 H -0.185 1.185 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.270 0.730 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.126 0.874 38 H 0.084 0.916 39 H 0.133 0.867 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.122 0.878 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 18.752 -9.042 3.095 21.047 hybrid contribution -1.253 0.162 2.369 2.685 sum 17.499 -8.880 5.464 20.370 Atomic orbital electron populations 1.19964 0.86910 1.03373 1.02229 1.21570 0.98877 0.92366 1.07914 1.26384 0.81741 1.02357 1.02780 1.84725 1.29818 1.15102 1.67416 1.73734 1.22319 0.92118 1.20383 1.23485 0.88735 0.98858 1.03322 1.20827 1.01221 0.87012 0.92640 1.69204 1.24846 1.10657 1.14843 1.23643 0.91102 0.98940 0.99095 1.23089 0.98923 0.96034 0.97644 1.23969 0.96598 0.88808 0.99936 0.88115 1.21578 0.84537 0.99474 0.93498 1.47697 1.33714 1.32809 1.20376 1.22042 1.02738 0.98761 0.83464 1.19866 0.80849 0.79725 0.87156 1.90682 1.69345 1.58400 1.23897 1.23417 1.00029 1.02776 1.01566 1.85553 1.38157 1.47053 1.19448 1.23157 1.20356 1.26906 0.98590 0.90504 1.25960 0.98292 0.94998 0.99253 1.70174 1.33528 1.25844 1.25055 0.85101 0.77141 0.78907 0.77774 1.19337 1.20542 1.18459 0.90899 0.91345 0.92404 0.72970 0.89989 0.91564 0.92298 0.90841 0.89459 0.87401 0.91644 0.86687 0.92078 0.91261 0.87837 0.88368 0.88674 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.30 10.32 71.24 0.74 -1.57 16 2 C -0.20 -6.11 6.32 -19.74 -0.12 -6.23 16 3 C -0.05 -1.23 12.26 67.18 0.82 -0.41 16 4 O 0.09 2.48 11.20 71.66 0.80 3.29 16 5 N -0.38 -11.08 11.87 -49.56 -0.59 -11.67 16 6 C 0.01 0.44 6.24 43.58 0.27 0.71 16 7 C 0.11 3.00 5.46 85.56 0.47 3.47 16 8 N -0.47 -12.74 5.92 -906.86 -5.37 -18.10 16 9 C 0.00 0.03 6.88 83.57 0.57 0.60 16 10 C -0.12 -2.04 8.00 30.93 0.25 -1.80 16 11 C 0.02 0.32 3.35 42.18 0.14 0.46 16 12 H 0.10 1.47 7.63 -2.39 -0.02 1.45 16 13 C 0.13 2.77 5.67 86.38 0.49 3.26 16 14 N -0.61 -15.45 2.79 -846.74 -2.36 -17.81 16 15 C 0.07 1.21 10.25 127.77 1.31 2.52 16 16 C 0.54 19.73 7.35 87.66 0.64 20.37 16 17 O -0.55 -25.15 15.35 -3.01 -0.05 -25.19 16 18 C -0.13 -5.00 5.01 71.24 0.36 -4.64 16 19 S -0.13 -6.95 20.58 -56.49 -1.16 -8.11 16 20 C -0.54 -30.07 9.50 67.96 0.65 -29.42 16 21 H 0.08 4.00 7.80 -2.91 -0.02 3.98 16 22 C 0.02 1.11 5.49 84.86 0.47 1.58 16 23 N -0.91 -54.68 13.22 21.65 0.29 -54.39 16 24 Si 0.99 42.82 29.55 68.60 2.03 44.85 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 26 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 27 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 28 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 30 H 0.06 2.34 8.03 -2.39 -0.02 2.32 16 31 H 0.25 3.64 8.06 -2.91 -0.02 3.62 16 32 H 0.08 2.38 7.91 -2.38 -0.02 2.36 16 33 H 0.07 1.52 7.56 -2.38 -0.02 1.50 16 34 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 1.61 7.84 -2.39 -0.02 1.59 16 36 H 0.09 1.71 7.96 -2.39 -0.02 1.69 16 37 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.81 6.97 -2.39 -0.02 1.79 16 39 H 0.12 1.49 7.98 -2.38 -0.02 1.47 16 40 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.07 1.26 6.31 -2.39 -0.02 1.25 16 42 H 0.10 1.03 7.95 -2.39 -0.02 1.01 16 43 H 0.10 3.55 6.93 -2.40 -0.02 3.54 16 44 H 0.10 3.52 8.14 -2.40 -0.02 3.50 16 45 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 Total: -1.00 -77.75 390.01 1.63 -76.12 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.99 Total: 22.13 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 7.05 Total: -11.10 kcal Atomic # 7 Polarization: -93.95 SS G_CDS: -8.03 Total: -101.98 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: 0.76 Total: -21.91 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: -6.95 SS G_CDS: -1.16 Total: -8.11 kcal Total: -77.75 1.63 -76.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230814293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.136 kcal (2) G-P(sol) polarization free energy of solvation -77.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds