Wall clock time and date at job start Tue Mar 31 2020 22:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30176 * 126.80148 * 2 1 4 4 O 1.20920 * 111.60196 * 179.79867 * 3 2 1 5 5 C 1.34038 * 111.56958 * 0.48820 * 4 3 2 6 6 C 1.35455 * 106.44434 * 359.70525 * 5 4 3 7 7 C 1.50699 * 128.00956 * 180.02562 * 6 5 4 8 8 N 1.46900 * 109.47633 * 259.96367 * 7 6 5 9 9 C 1.47480 * 111.00297 * 74.01994 * 8 7 6 10 10 C 1.53517 * 87.93197 * 138.70650 * 9 8 7 11 11 C 1.47473 * 111.00264 * 169.99971 * 8 7 6 12 12 H 1.08996 * 113.47630 * 336.05473 * 11 8 7 13 13 C 1.52999 * 113.48080 * 106.46825 * 11 8 7 14 14 N 1.46500 * 109.46857 * 304.99890 * 13 11 8 15 15 C 1.46500 * 120.00395 * 269.99712 * 14 13 11 16 16 C 1.34779 * 119.99900 * 89.99760 * 14 13 11 17 17 O 1.21276 * 120.00140 * 359.97438 * 16 14 13 18 18 C 1.50698 * 119.99967 * 179.97438 * 16 14 13 19 19 S 1.81000 * 109.47373 * 180.02562 * 18 16 14 20 20 C 1.76202 * 100.00165 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99949 * 0.02562 * 20 19 18 22 22 C 1.38802 * 119.99842 * 179.97438 * 20 19 18 23 23 N 1.31627 * 120.00194 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99757 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47192 * 60.00649 * 24 22 20 26 26 H 1.48500 * 109.47008 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47212 * 300.00181 * 24 22 20 28 28 H 1.09001 * 109.46953 * 269.68163 * 1 2 3 29 29 H 1.09000 * 109.47318 * 29.67760 * 1 2 3 30 30 H 1.09000 * 109.47161 * 149.68391 * 1 2 3 31 31 H 1.07995 * 126.78249 * 179.73079 * 5 4 3 32 32 H 1.09004 * 109.46811 * 19.96164 * 7 6 5 33 33 H 1.08995 * 109.47502 * 139.95785 * 7 6 5 34 34 H 1.08994 * 113.47825 * 253.47734 * 9 8 7 35 35 H 1.09006 * 113.47090 * 23.94440 * 9 8 7 36 36 H 1.08994 * 114.17197 * 220.33168 * 10 9 8 37 37 H 1.08996 * 114.34064 * 87.63419 * 10 9 8 38 38 H 1.09004 * 109.47299 * 64.99325 * 13 11 8 39 39 H 1.08995 * 109.47791 * 184.99914 * 13 11 8 40 40 H 1.09002 * 109.46805 * 89.99840 * 15 14 13 41 41 H 1.08990 * 109.47504 * 210.00328 * 15 14 13 42 42 H 1.09005 * 109.46359 * 330.00478 * 15 14 13 43 43 H 1.08996 * 109.47289 * 300.00170 * 18 16 14 44 44 H 1.09000 * 109.47422 * 59.99917 * 18 16 14 45 45 H 0.96999 * 120.00302 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0040 5 6 3.6025 -0.6068 -0.0034 6 6 2.3540 -1.1320 -0.0063 7 6 1.9590 -2.5863 -0.0138 8 7 1.5979 -2.9887 -1.3797 9 6 2.7982 -3.1226 -2.2261 10 6 2.1683 -4.3893 -2.8223 11 6 1.4361 -4.4515 -1.4744 12 1 1.9838 -4.9995 -0.7077 13 6 -0.0228 -4.8971 -1.5918 14 7 -0.7926 -4.3480 -0.4728 15 6 -0.9169 -5.1078 0.7736 16 6 -1.3865 -3.1438 -0.5900 17 8 -1.2833 -2.5146 -1.6216 18 6 -2.1789 -2.5793 0.5608 19 16 -2.8470 -0.9621 0.0976 20 6 -3.7018 -0.5477 1.5816 21 1 -3.6929 -1.2303 2.4185 22 6 -4.3858 0.6564 1.6754 23 7 -4.3963 1.4885 0.6556 24 14 -5.2926 1.0954 3.2484 25 1 -4.3302 1.1407 4.3785 26 1 -5.9377 2.4240 3.0936 27 1 -6.3313 0.0704 3.5235 28 1 -0.3633 -0.0057 1.0277 29 1 -0.3634 0.8928 -0.5088 30 1 -0.3633 -0.8871 -0.5187 31 1 4.5339 -1.1534 -0.0062 32 1 2.7960 -3.1919 0.3340 33 1 1.1045 -2.7342 0.6465 34 1 2.9132 -2.3139 -2.9476 35 1 3.7093 -3.3161 -1.6598 36 1 2.8735 -5.2043 -2.9852 37 1 1.5161 -4.2074 -3.6764 38 1 -0.4391 -4.5345 -2.5317 39 1 -0.0734 -5.9857 -1.5680 40 1 -0.0992 -4.8426 1.4438 41 1 -1.8684 -4.8714 1.2499 42 1 -0.8755 -6.1748 0.5543 43 1 -2.9991 -3.2549 0.8034 44 1 -1.5298 -2.4693 1.4296 45 1 -4.8746 2.3299 0.7209 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230814925.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:12 Heat of formation + Delta-G solvation = 75.932699 kcal Electronic energy + Delta-G solvation = -28798.185269 eV Core-core repulsion = 24947.321043 eV Total energy + Delta-G solvation = -3850.864226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.60000 -40.60433 -38.85103 -35.29325 -34.74999 -32.41644 -32.34943 -30.52418 -29.65726 -28.12613 -27.76436 -26.22587 -25.44957 -24.97429 -23.29286 -21.12106 -20.97985 -19.78619 -19.13223 -17.65338 -17.30220 -17.17353 -16.53108 -16.21698 -15.95867 -15.78909 -14.87657 -14.79252 -14.48947 -14.02465 -13.82207 -13.63378 -13.25910 -13.02283 -12.88325 -12.59582 -12.45978 -12.38759 -12.15903 -11.98278 -11.81467 -11.70417 -11.49418 -11.46229 -11.18098 -11.03101 -11.02554 -10.77006 -10.71310 -10.49460 -9.79404 -9.40709 -9.23963 -9.16824 -9.03335 -8.90046 -8.34182 -8.20391 -6.41985 -6.20428 -3.89293 1.71419 2.58901 2.97136 3.20373 3.23930 3.27527 3.29945 3.48967 3.60489 3.98257 4.21374 4.31185 4.56261 4.66183 4.79839 4.88052 4.90999 5.06403 5.10567 5.13900 5.14947 5.17693 5.29761 5.37799 5.42263 5.49116 5.56374 5.61376 5.66944 5.69128 5.73125 5.85372 5.92037 5.93073 6.04027 6.13786 6.28519 6.36378 6.58625 6.71391 6.77841 7.01715 7.27662 7.60303 7.64693 8.35882 8.66410 8.71967 9.25327 10.86420 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011300 B = 0.004500 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.269702 B = 6220.724543 C = 7953.944101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.052 3.948 3 N -0.375 5.375 4 O 0.089 5.911 5 C -0.073 4.073 6 C -0.192 4.192 7 C 0.103 3.897 8 N -0.433 5.433 9 C -0.003 4.003 10 C -0.135 4.135 11 C 0.009 3.991 12 H 0.074 0.926 13 C 0.136 3.864 14 N -0.624 5.624 15 C 0.081 3.919 16 C 0.532 3.468 17 O -0.489 6.489 18 C -0.156 4.156 19 S -0.049 6.049 20 C -0.539 4.539 21 H 0.070 0.930 22 C 0.077 3.923 23 N -0.866 5.866 24 Si 0.914 3.086 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.275 1.275 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.205 0.795 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.948 -16.186 -1.747 22.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.108 4.108 3 N -0.083 5.083 4 O 0.027 5.973 5 C -0.156 4.156 6 C -0.196 4.196 7 C -0.025 4.025 8 N -0.155 5.155 9 C -0.132 4.132 10 C -0.173 4.173 11 C -0.102 4.102 12 H 0.092 0.908 13 C 0.013 3.987 14 N -0.361 5.361 15 C -0.063 4.063 16 C 0.320 3.680 17 O -0.361 6.361 18 C -0.307 4.307 19 S 0.179 5.821 20 C -0.687 4.687 21 H 0.088 0.912 22 C -0.133 4.133 23 N -0.501 5.501 24 Si 0.740 3.260 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.200 1.200 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.129 0.871 31 H 0.222 0.778 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.115 0.885 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.104 0.896 44 H 0.101 0.899 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 15.242 -13.269 -3.503 20.510 hybrid contribution 0.057 -1.851 2.876 3.420 sum 15.300 -15.119 -0.627 21.519 Atomic orbital electron populations 1.20797 0.82391 1.06208 1.04171 1.24218 1.00513 0.87198 0.98837 1.73889 0.89072 1.24350 1.21001 1.84807 1.22310 1.22372 1.67841 1.25604 1.00058 0.84611 1.05321 1.21026 0.92270 0.97115 1.09179 1.20785 0.99812 0.89093 0.92821 1.69179 1.25852 1.12831 1.07639 1.23714 0.93222 0.98517 0.97738 1.23147 0.99461 0.97612 0.97094 1.23872 0.97564 0.91099 0.97642 0.90797 1.21358 0.88909 0.97056 0.91418 1.47761 1.53424 1.19893 1.15005 1.21746 1.02190 0.95961 0.86419 1.20137 0.78699 0.80082 0.89120 1.90707 1.58568 1.57237 1.29637 1.23658 1.01809 1.05759 0.99482 1.85370 1.63912 1.10655 1.22186 1.22843 1.37874 1.07205 1.00826 0.91181 1.24937 0.95885 0.95256 0.97179 1.69989 1.40428 1.09717 1.29926 0.86304 0.79648 0.77773 0.82274 1.19993 1.20835 1.20002 0.90004 0.90795 0.87080 0.77796 0.93611 0.89485 0.89821 0.91913 0.90814 0.88478 0.89193 0.90793 0.93384 0.90784 0.91566 0.89606 0.89854 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.64 8.45 36.01 0.30 -1.33 16 2 C 0.05 0.97 7.33 -82.10 -0.60 0.37 16 3 N -0.38 -7.09 12.07 33.42 0.40 -6.69 16 4 O 0.09 1.38 11.20 17.18 0.19 1.57 16 5 C -0.07 -0.90 12.26 29.74 0.36 -0.53 16 6 C -0.19 -2.82 5.47 -104.42 -0.57 -3.40 16 7 C 0.10 1.30 5.32 -4.98 -0.03 1.27 16 8 N -0.43 -5.48 5.00 -237.92 -1.19 -6.67 16 9 C 0.00 -0.03 7.30 -7.54 -0.06 -0.08 16 10 C -0.13 -1.13 8.00 -26.19 -0.21 -1.34 16 11 C 0.01 0.09 3.37 -71.43 -0.24 -0.15 16 12 H 0.07 0.60 7.77 -51.93 -0.40 0.20 16 13 C 0.14 1.45 5.63 -4.04 -0.02 1.43 16 14 N -0.62 -7.95 2.73 -181.57 -0.50 -8.45 16 15 C 0.08 0.76 10.29 59.85 0.62 1.38 16 16 C 0.53 9.31 6.00 -10.99 -0.07 9.25 16 17 O -0.49 -10.25 13.24 5.56 0.07 -10.18 16 18 C -0.16 -3.01 4.48 36.00 0.16 -2.85 16 19 S -0.05 -1.25 17.29 -107.50 -1.86 -3.11 16 20 C -0.54 -14.86 9.50 30.94 0.29 -14.57 16 21 H 0.07 1.84 7.80 -52.49 -0.41 1.43 16 22 C 0.08 2.16 5.49 -17.43 -0.10 2.06 16 23 N -0.87 -25.67 13.22 55.49 0.73 -24.93 16 24 Si 0.91 21.29 29.55 -169.99 -5.02 16.27 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 28 H 0.08 1.79 7.87 -51.93 -0.41 1.38 16 29 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 30 H 0.11 2.38 3.88 -51.93 -0.20 2.17 16 31 H 0.21 1.49 8.06 -52.49 -0.42 1.06 16 32 H 0.05 0.45 7.56 -51.93 -0.39 0.06 16 33 H 0.09 1.23 7.66 -51.93 -0.40 0.83 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.51 7.70 -51.93 -0.40 0.11 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.10 0.91 7.94 -51.93 -0.41 0.50 16 38 H 0.09 1.16 7.16 -51.93 -0.37 0.79 16 39 H 0.07 0.57 7.89 -51.93 -0.41 0.16 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.74 6.44 -51.93 -0.33 0.41 16 42 H 0.07 0.46 7.89 -51.93 -0.41 0.05 16 43 H 0.09 1.57 7.40 -51.92 -0.38 1.18 16 44 H 0.08 1.52 8.11 -51.92 -0.42 1.09 16 45 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 376.54 15.07 5.67 5.67 Total: -1.00 -34.19 376.54 -8.25 -42.44 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.61 Total: 2.57 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -0.15 Total: -8.51 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -0.55 Total: -46.74 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.27 Total: -8.61 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.25 SS G_CDS: -1.86 Total: -3.11 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.19 -8.25 -42.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230814925.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.371 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds