Wall clock time and date at job start Tue Mar 31 2020 22:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30176 * 126.80148 * 2 1 4 4 O 1.20920 * 111.60196 * 179.79867 * 3 2 1 5 5 C 1.34038 * 111.56958 * 0.48820 * 4 3 2 6 6 C 1.35455 * 106.44434 * 359.70525 * 5 4 3 7 7 C 1.50699 * 128.00956 * 180.02562 * 6 5 4 8 8 N 1.46900 * 109.47633 * 259.96367 * 7 6 5 9 9 C 1.47480 * 111.00297 * 74.01994 * 8 7 6 10 10 C 1.53517 * 87.93197 * 138.70650 * 9 8 7 11 11 C 1.47473 * 111.00264 * 169.99971 * 8 7 6 12 12 H 1.08996 * 113.47630 * 336.05473 * 11 8 7 13 13 C 1.52999 * 113.48080 * 106.46825 * 11 8 7 14 14 N 1.46500 * 109.46857 * 304.99890 * 13 11 8 15 15 C 1.46500 * 120.00395 * 269.99712 * 14 13 11 16 16 C 1.34779 * 119.99900 * 89.99760 * 14 13 11 17 17 O 1.21276 * 120.00140 * 359.97438 * 16 14 13 18 18 C 1.50698 * 119.99967 * 179.97438 * 16 14 13 19 19 S 1.81000 * 109.47373 * 180.02562 * 18 16 14 20 20 C 1.76202 * 100.00165 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99949 * 0.02562 * 20 19 18 22 22 C 1.38802 * 119.99842 * 179.97438 * 20 19 18 23 23 N 1.31627 * 120.00194 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99757 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47192 * 60.00649 * 24 22 20 26 26 H 1.48500 * 109.47008 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47212 * 300.00181 * 24 22 20 28 28 H 1.09001 * 109.46953 * 269.68163 * 1 2 3 29 29 H 1.09000 * 109.47318 * 29.67760 * 1 2 3 30 30 H 1.09000 * 109.47161 * 149.68391 * 1 2 3 31 31 H 1.07995 * 126.78249 * 179.73079 * 5 4 3 32 32 H 1.09004 * 109.46811 * 19.96164 * 7 6 5 33 33 H 1.08995 * 109.47502 * 139.95785 * 7 6 5 34 34 H 1.08994 * 113.47825 * 253.47734 * 9 8 7 35 35 H 1.09006 * 113.47090 * 23.94440 * 9 8 7 36 36 H 1.08994 * 114.17197 * 220.33168 * 10 9 8 37 37 H 1.08996 * 114.34064 * 87.63419 * 10 9 8 38 38 H 1.09004 * 109.47299 * 64.99325 * 13 11 8 39 39 H 1.08995 * 109.47791 * 184.99914 * 13 11 8 40 40 H 1.09002 * 109.46805 * 89.99840 * 15 14 13 41 41 H 1.08990 * 109.47504 * 210.00328 * 15 14 13 42 42 H 1.09005 * 109.46359 * 330.00478 * 15 14 13 43 43 H 1.08996 * 109.47289 * 300.00170 * 18 16 14 44 44 H 1.09000 * 109.47422 * 59.99917 * 18 16 14 45 45 H 0.96999 * 120.00302 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0040 5 6 3.6025 -0.6068 -0.0034 6 6 2.3540 -1.1320 -0.0063 7 6 1.9590 -2.5863 -0.0138 8 7 1.5979 -2.9887 -1.3797 9 6 2.7982 -3.1226 -2.2261 10 6 2.1683 -4.3893 -2.8223 11 6 1.4361 -4.4515 -1.4744 12 1 1.9838 -4.9995 -0.7077 13 6 -0.0228 -4.8971 -1.5918 14 7 -0.7926 -4.3480 -0.4728 15 6 -0.9169 -5.1078 0.7736 16 6 -1.3865 -3.1438 -0.5900 17 8 -1.2833 -2.5146 -1.6216 18 6 -2.1789 -2.5793 0.5608 19 16 -2.8470 -0.9621 0.0976 20 6 -3.7018 -0.5477 1.5816 21 1 -3.6929 -1.2303 2.4185 22 6 -4.3858 0.6564 1.6754 23 7 -4.3963 1.4885 0.6556 24 14 -5.2926 1.0954 3.2484 25 1 -4.3302 1.1407 4.3785 26 1 -5.9377 2.4240 3.0936 27 1 -6.3313 0.0704 3.5235 28 1 -0.3633 -0.0057 1.0277 29 1 -0.3634 0.8928 -0.5088 30 1 -0.3633 -0.8871 -0.5187 31 1 4.5339 -1.1534 -0.0062 32 1 2.7960 -3.1919 0.3340 33 1 1.1045 -2.7342 0.6465 34 1 2.9132 -2.3139 -2.9476 35 1 3.7093 -3.3161 -1.6598 36 1 2.8735 -5.2043 -2.9852 37 1 1.5161 -4.2074 -3.6764 38 1 -0.4391 -4.5345 -2.5317 39 1 -0.0734 -5.9857 -1.5680 40 1 -0.0992 -4.8426 1.4438 41 1 -1.8684 -4.8714 1.2499 42 1 -0.8755 -6.1748 0.5543 43 1 -2.9991 -3.2549 0.8034 44 1 -1.5298 -2.4693 1.4296 45 1 -4.8746 2.3299 0.7209 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230814925.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:11 Heat of formation + Delta-G solvation = 51.629769 kcal Electronic energy + Delta-G solvation = -28799.239123 eV Core-core repulsion = 24947.321043 eV Total energy + Delta-G solvation = -3851.918080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.90174 -41.48152 -40.04080 -36.46674 -35.95668 -34.56019 -33.54467 -31.72841 -30.71542 -29.46033 -29.04570 -27.64038 -27.09642 -25.91370 -24.18258 -22.33967 -22.15352 -20.69793 -20.32688 -19.44415 -18.60210 -18.39211 -17.81001 -17.22232 -17.00931 -16.86384 -16.76803 -16.05903 -15.79008 -15.51266 -14.92710 -14.67237 -14.55886 -14.27468 -14.09555 -14.03235 -13.77784 -13.51728 -13.41616 -13.16254 -13.14446 -13.07198 -12.89152 -12.69056 -12.55925 -12.50174 -12.29411 -12.12263 -11.82500 -11.69389 -11.41289 -11.10634 -10.71789 -10.58200 -10.39306 -10.17089 -9.74600 -9.30134 -8.50988 -8.32421 -6.04831 0.64109 1.25813 1.28093 1.40229 1.45756 1.57274 1.84846 2.24201 2.32196 2.49502 3.01427 3.14267 3.32730 3.38894 3.61981 3.69267 3.87366 3.93990 3.94514 4.16755 4.25776 4.33038 4.40527 4.41108 4.45570 4.52970 4.55076 4.64715 4.70519 4.72518 4.76764 4.81226 4.87871 4.98243 5.03729 5.05115 5.06384 5.14213 5.34241 5.42983 5.49506 5.52796 5.82701 6.20713 6.25858 6.49648 7.09634 7.42874 7.45465 8.75408 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011300 B = 0.004500 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.269702 B = 6220.724543 C = 7953.944101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.014 3.986 3 N -0.411 5.411 4 O 0.095 5.905 5 C -0.042 4.042 6 C -0.200 4.200 7 C 0.110 3.890 8 N -0.478 5.478 9 C -0.002 4.002 10 C -0.122 4.122 11 C 0.015 3.985 12 H 0.105 0.895 13 C 0.132 3.868 14 N -0.611 5.611 15 C 0.072 3.928 16 C 0.535 3.465 17 O -0.534 6.534 18 C -0.133 4.133 19 S -0.121 6.121 20 C -0.548 4.548 21 H 0.077 0.923 22 C 0.019 3.981 23 N -0.909 5.909 24 Si 0.987 3.013 25 H -0.265 1.265 26 H -0.281 1.281 27 H -0.261 1.261 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.109 0.891 31 H 0.266 0.734 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.115 0.885 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.777 -19.973 -0.175 27.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.144 4.144 3 N -0.118 5.118 4 O 0.031 5.969 5 C -0.124 4.124 6 C -0.205 4.205 7 C -0.019 4.019 8 N -0.201 5.201 9 C -0.131 4.131 10 C -0.160 4.160 11 C -0.095 4.095 12 H 0.123 0.877 13 C 0.009 3.991 14 N -0.345 5.345 15 C -0.070 4.070 16 C 0.321 3.679 17 O -0.410 6.410 18 C -0.284 4.284 19 S 0.107 5.893 20 C -0.696 4.696 21 H 0.095 0.905 22 C -0.187 4.187 23 N -0.546 5.546 24 Si 0.809 3.191 25 H -0.190 1.190 26 H -0.206 1.206 27 H -0.186 1.186 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.127 0.873 31 H 0.281 0.719 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.125 0.875 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.133 0.867 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.121 0.879 43 H 0.115 0.885 44 H 0.111 0.889 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 18.070 -17.114 -1.915 24.961 hybrid contribution -0.696 -0.802 2.343 2.573 sum 17.374 -17.916 0.428 24.961 Atomic orbital electron populations 1.20340 0.85006 1.04113 1.02076 1.24071 0.99461 0.89479 1.01350 1.73867 0.90351 1.25387 1.22166 1.84743 1.20650 1.24478 1.67076 1.26565 1.01287 0.82854 1.01744 1.21302 0.92223 0.97436 1.09512 1.20784 1.00262 0.88000 0.92824 1.69183 1.27805 1.15116 1.07951 1.23780 0.93641 0.98378 0.97299 1.23054 0.99299 0.97878 0.95769 1.23936 0.96836 0.89621 0.99077 0.87744 1.21610 0.89288 0.99071 0.89155 1.47697 1.51921 1.18112 1.16773 1.22034 1.02359 0.97592 0.84995 1.19765 0.78925 0.81482 0.87689 1.90696 1.60469 1.58973 1.30881 1.23478 1.02355 1.01813 1.00741 1.85530 1.64720 1.16046 1.22983 1.23201 1.37557 1.07542 1.01328 0.90499 1.25970 0.96816 0.95117 1.00747 1.70161 1.41738 1.10233 1.32440 0.85174 0.78494 0.77654 0.77770 1.19017 1.20604 1.18572 0.92198 0.94743 0.87268 0.71855 0.89700 0.91741 0.92187 0.88846 0.87488 0.90435 0.92237 0.86712 0.91861 0.91682 0.87850 0.88505 0.88900 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.65 8.45 71.24 0.60 -2.04 16 2 C 0.01 0.57 7.33 43.58 0.32 0.88 16 3 N -0.41 -16.05 12.07 -49.56 -0.60 -16.64 16 4 O 0.09 2.85 11.20 71.66 0.80 3.65 16 5 C -0.04 -0.90 12.26 67.18 0.82 -0.08 16 6 C -0.20 -5.62 5.47 -19.74 -0.11 -5.73 16 7 C 0.11 2.47 5.32 85.56 0.46 2.92 16 8 N -0.48 -11.16 5.00 -906.65 -4.53 -15.70 16 9 C 0.00 -0.04 7.30 83.58 0.61 0.57 16 10 C -0.12 -1.65 8.00 30.94 0.25 -1.40 16 11 C 0.02 0.24 3.37 42.20 0.14 0.38 16 12 H 0.10 1.05 7.77 -2.39 -0.02 1.03 16 13 C 0.13 2.46 5.63 86.38 0.49 2.94 16 14 N -0.61 -14.40 2.73 -846.77 -2.31 -16.72 16 15 C 0.07 1.12 10.29 127.77 1.31 2.43 16 16 C 0.53 18.98 6.00 87.66 0.53 19.51 16 17 O -0.53 -23.54 13.24 -3.02 -0.04 -23.58 16 18 C -0.13 -5.24 4.48 71.24 0.32 -4.92 16 19 S -0.12 -6.56 17.29 -56.49 -0.98 -7.53 16 20 C -0.55 -31.30 9.50 67.95 0.65 -30.65 16 21 H 0.08 4.11 7.80 -2.91 -0.02 4.09 16 22 C 0.02 1.07 5.49 84.86 0.47 1.53 16 23 N -0.91 -56.57 13.22 21.65 0.29 -56.29 16 24 Si 0.99 44.55 29.55 68.60 2.03 46.57 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 27 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 28 H 0.06 2.90 7.87 -2.39 -0.02 2.88 16 29 H 0.03 1.76 8.14 -2.39 -0.02 1.75 16 30 H 0.11 5.07 3.88 -2.39 -0.01 5.06 16 31 H 0.27 2.11 8.06 -2.91 -0.02 2.09 16 32 H 0.09 1.21 7.56 -2.38 -0.02 1.19 16 33 H 0.06 1.72 7.66 -2.39 -0.02 1.71 16 34 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.09 0.99 7.70 -2.38 -0.02 0.97 16 36 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 1.36 7.94 -2.39 -0.02 1.34 16 38 H 0.06 1.51 7.16 -2.39 -0.02 1.49 16 39 H 0.11 1.22 7.89 -2.39 -0.02 1.20 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.06 1.14 6.44 -2.39 -0.02 1.13 16 42 H 0.10 0.88 7.89 -2.38 -0.02 0.86 16 43 H 0.10 3.56 7.40 -2.40 -0.02 3.55 16 44 H 0.09 3.45 8.11 -2.39 -0.02 3.43 16 45 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -83.79 376.54 2.50 -81.29 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 1.00 Total: 18.60 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: 6.85 Total: -13.66 kcal Atomic # 7 Polarization: -98.19 SS G_CDS: -7.16 Total: -105.35 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: 0.76 Total: -19.93 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: -6.56 SS G_CDS: -0.98 Total: -7.53 kcal Total: -83.79 2.50 -81.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230814925.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.922 kcal (2) G-P(sol) polarization free energy of solvation -83.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds