Wall clock time and date at job start Tue Mar 31 2020 22:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35008 * 127.27191 * 2 1 4 4 C 1.39488 * 111.67813 * 180.13816 * 3 2 1 5 5 C 1.47692 * 122.09874 * 179.78847 * 4 3 2 6 6 O 1.21578 * 119.99818 * 16.28354 * 5 4 3 7 7 N 1.34777 * 119.99883 * 196.28530 * 5 4 3 8 8 C 1.46928 * 120.63217 * 359.25957 * 7 5 4 9 9 C 1.53191 * 108.77527 * 126.41225 * 8 7 5 10 10 C 1.53037 * 109.34169 * 54.61971 * 9 8 7 11 11 C 1.53042 * 109.53714 * 298.68395 * 10 9 8 12 12 H 1.09000 * 109.49626 * 301.34423 * 11 10 9 13 13 N 1.46506 * 109.49629 * 181.28079 * 11 10 9 14 14 C 1.36937 * 120.00035 * 300.06795 * 13 11 10 15 15 H 1.07992 * 120.00410 * 41.61025 * 14 13 11 16 16 C 1.38813 * 119.99369 * 221.61372 * 14 13 11 17 17 N 1.31614 * 120.00446 * 6.41279 * 16 14 13 18 18 Si 1.86803 * 119.99686 * 186.41173 * 16 14 13 19 19 H 1.48506 * 109.47155 * 60.00088 * 18 16 14 20 20 H 1.48497 * 109.47424 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47013 * 300.00296 * 18 16 14 22 22 C 1.46503 * 119.99633 * 120.06326 * 13 11 10 23 23 C 1.52998 * 109.47144 * 264.90915 * 22 13 11 24 24 O 1.42901 * 109.46906 * 65.00541 * 23 22 13 25 25 C 1.46933 * 120.63015 * 179.28016 * 7 5 4 26 26 N 1.30605 * 115.79688 * 359.51500 * 4 3 2 27 27 S 1.56146 * 109.79573 * 0.27535 * 26 4 3 28 28 H 1.08998 * 109.46981 * 180.33145 * 1 2 3 29 29 H 1.09003 * 109.46682 * 300.32576 * 1 2 3 30 30 H 1.08998 * 109.47595 * 60.32944 * 1 2 3 31 31 H 1.07992 * 124.15987 * 359.92712 * 3 2 1 32 32 H 1.08992 * 109.58415 * 246.20079 * 8 7 5 33 33 H 1.09002 * 109.58559 * 6.62577 * 8 7 5 34 34 H 1.08998 * 109.49393 * 174.58907 * 9 8 7 35 35 H 1.09008 * 109.49764 * 294.65013 * 9 8 7 36 36 H 1.09002 * 109.48863 * 178.64590 * 10 9 8 37 37 H 1.08996 * 109.43348 * 58.68424 * 10 9 8 38 38 H 0.97000 * 120.00264 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.47407 * 24.91350 * 22 13 11 40 40 H 1.09003 * 109.46810 * 144.91666 * 22 13 11 41 41 H 1.08997 * 109.47160 * 184.99963 * 23 22 13 42 42 H 1.08997 * 109.47316 * 305.00715 * 23 22 13 43 43 H 0.96706 * 114.00321 * 180.02562 * 24 23 22 44 44 H 1.09000 * 109.58518 * 113.80095 * 25 7 5 45 45 H 1.09002 * 109.70296 * 353.44603 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.0744 0.0000 4 6 3.6682 0.6994 -0.0031 5 6 4.7604 1.6935 -0.0084 6 8 4.5305 2.8507 0.2851 7 7 6.0119 1.3178 -0.3386 8 6 6.3084 -0.0801 -0.6799 9 6 7.0058 -0.1176 -2.0433 10 6 8.2337 0.7952 -2.0098 11 6 7.7942 2.2343 -1.7306 12 1 7.0981 2.5586 -2.5041 13 7 8.9671 3.1122 -1.7290 14 6 9.9826 2.8965 -0.8360 15 1 10.3164 1.8902 -0.6306 16 6 10.5829 3.9714 -0.1949 17 7 10.0955 5.1844 -0.3473 18 14 12.0825 3.6963 0.8844 19 1 13.1765 3.1072 0.0710 20 1 12.5298 4.9941 1.4507 21 1 11.7332 2.7684 1.9900 22 6 9.0536 4.2208 -2.6829 23 6 9.8463 3.7744 -3.9131 24 8 9.1277 2.7444 -4.5948 25 6 7.1059 2.2985 -0.3636 26 7 3.8995 -0.5860 0.0045 27 16 2.5473 -1.3667 0.0083 28 1 -0.3633 -1.0276 0.0059 29 1 -0.3633 0.5189 0.8871 30 1 -0.3634 0.5087 -0.8929 31 1 1.9807 2.0981 -0.0011 32 1 6.9637 -0.5101 0.0776 33 1 5.3800 -0.6492 -0.7286 34 1 7.3172 -1.1384 -2.2647 35 1 6.3167 0.2278 -2.8141 36 1 8.7455 0.7518 -2.9712 37 1 8.9110 0.4633 -1.2229 38 1 10.5147 5.9355 0.1011 39 1 8.0498 4.5186 -2.9859 40 1 9.5571 5.0658 -2.2132 41 1 9.9869 4.6232 -4.5823 42 1 10.8183 3.3933 -3.6003 43 1 9.5725 2.4123 -5.3866 44 1 7.8261 2.0624 0.4197 45 1 6.7058 3.2995 -0.2025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264630481.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:15 Heat of formation + Delta-G solvation = -7.111061 kcal Electronic energy + Delta-G solvation = -28273.684697 eV Core-core repulsion = 24419.219424 eV Total energy + Delta-G solvation = -3854.465273 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.59564 -38.57590 -37.21381 -36.14723 -34.66283 -33.52949 -32.04633 -31.13738 -29.59841 -28.44615 -27.26358 -26.12162 -24.36209 -23.71693 -22.14975 -20.90677 -20.38561 -19.79194 -18.79250 -18.50905 -16.80490 -16.51287 -16.15672 -15.72488 -15.48594 -14.81974 -14.58218 -14.25569 -14.24544 -13.83046 -13.66867 -13.30977 -13.27257 -13.20780 -13.08804 -12.95006 -12.75882 -12.45469 -12.25699 -11.77992 -11.37588 -11.22969 -11.17793 -11.02243 -10.87296 -10.60498 -10.40773 -10.25818 -10.04662 -9.92588 -9.78751 -9.65277 -9.53420 -9.18779 -9.09167 -8.90417 -8.53262 -8.10011 -6.46759 -5.70856 -3.44807 0.44296 1.25659 1.68958 1.78112 3.29975 3.36556 3.41902 3.42768 3.47799 4.38905 4.46716 4.69961 4.94903 5.01981 5.17963 5.22108 5.30647 5.39297 5.45742 5.51746 5.60822 5.63637 5.70612 5.76536 6.02498 6.09957 6.17905 6.25696 6.29601 6.31112 6.43416 6.50118 6.53393 6.66150 6.78813 6.85433 6.97489 7.14711 7.25142 7.26293 7.70262 7.83571 7.90713 8.41644 8.44780 8.59644 9.24447 9.82445 10.43893 11.23018 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016385 B = 0.003176 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.490516 B = 8813.170536 C = 9263.432523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.241 4.241 3 C -0.142 4.142 4 C 0.070 3.930 5 C 0.578 3.422 6 O -0.534 6.534 7 N -0.581 5.581 8 C 0.080 3.920 9 C -0.130 4.130 10 C -0.124 4.124 11 C 0.178 3.822 12 H 0.051 0.949 13 N -0.570 5.570 14 C -0.252 4.252 15 H 0.060 0.940 16 C 0.012 3.988 17 N -0.895 5.895 18 Si 0.902 3.098 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.138 3.862 23 C 0.058 3.942 24 O -0.569 6.569 25 C 0.103 3.897 26 N -0.508 5.508 27 S 0.421 5.579 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.170 0.830 32 H 0.063 0.937 33 H 0.131 0.869 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.257 0.743 39 H 0.026 0.974 40 H 0.124 0.876 41 H 0.020 0.980 42 H 0.041 0.959 43 H 0.353 0.647 44 H 0.076 0.924 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.376 -12.922 -3.012 20.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.372 4.372 3 C -0.175 4.175 4 C -0.104 4.104 5 C 0.360 3.640 6 O -0.411 6.411 7 N -0.313 5.313 8 C -0.045 4.045 9 C -0.169 4.169 10 C -0.164 4.164 11 C 0.070 3.930 12 H 0.070 0.930 13 N -0.289 5.289 14 C -0.382 4.382 15 H 0.077 0.923 16 C -0.187 4.187 17 N -0.539 5.539 18 Si 0.731 3.269 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.207 1.207 22 C 0.012 3.988 23 C -0.022 4.022 24 O -0.372 6.372 25 C -0.019 4.019 26 N -0.341 5.341 27 S 0.579 5.421 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.187 0.813 32 H 0.082 0.918 33 H 0.147 0.853 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.141 0.859 41 H 0.038 0.962 42 H 0.059 0.941 43 H 0.197 0.803 44 H 0.094 0.906 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.122 -14.002 -2.238 20.730 hybrid contribution 1.147 1.710 0.080 2.060 sum -13.975 -12.292 -2.158 18.737 Atomic orbital electron populations 1.20208 0.86223 1.03207 1.03559 1.26023 1.03117 0.99936 1.08096 1.21241 0.90251 1.01958 1.04025 1.21281 0.95283 0.89221 1.04608 1.17342 0.81668 0.86287 0.78696 1.90805 1.82394 1.18109 1.49810 1.48178 1.07663 1.10846 1.64575 1.22757 1.03169 0.82178 0.96435 1.21923 0.98476 0.99895 0.96569 1.21945 0.96091 0.96215 1.02120 1.20547 0.88951 0.90500 0.93017 0.93027 1.43606 1.16456 1.32317 1.36516 1.18973 1.10216 0.92440 1.16544 0.92287 1.25402 0.99601 0.96079 0.97659 1.69603 1.40956 0.98765 1.44531 0.86399 0.82716 0.76958 0.80813 1.21005 1.21569 1.20724 1.21424 0.97269 0.93862 0.86270 1.23154 0.96592 0.87775 0.94653 1.86608 1.50304 1.57369 1.42918 1.22485 0.86553 0.91906 1.01005 1.72735 1.25675 1.10905 1.24815 1.80627 0.89167 1.13681 1.58581 0.90924 0.90135 0.90136 0.81254 0.91823 0.85329 0.91766 0.92488 0.91540 0.92297 0.93264 0.95506 0.85935 0.96209 0.94107 0.80334 0.90557 0.89505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.46 36.01 0.38 -0.05 16 2 C -0.24 -2.28 6.58 -35.46 -0.23 -2.51 16 3 C -0.14 -1.80 9.95 -40.26 -0.40 -2.20 16 4 C 0.07 1.07 6.44 -84.06 -0.54 0.53 16 5 C 0.58 11.04 7.66 -12.40 -0.09 10.95 16 6 O -0.53 -11.83 16.17 5.30 0.09 -11.75 16 7 N -0.58 -11.08 2.97 -173.93 -0.52 -11.60 16 8 C 0.08 1.29 6.11 -3.71 -0.02 1.26 16 9 C -0.13 -2.06 6.08 -26.61 -0.16 -2.22 16 10 C -0.12 -2.39 5.11 -26.69 -0.14 -2.53 16 11 C 0.18 3.92 2.68 -67.81 -0.18 3.74 16 12 H 0.05 1.19 7.73 -51.93 -0.40 0.79 16 13 N -0.57 -14.00 2.32 -165.52 -0.38 -14.38 16 14 C -0.25 -6.61 8.10 -15.06 -0.12 -6.73 16 15 H 0.06 1.56 6.87 -52.49 -0.36 1.20 16 16 C 0.01 0.32 5.29 -17.43 -0.09 0.23 16 17 N -0.90 -25.06 10.85 55.49 0.60 -24.46 16 18 Si 0.90 21.32 29.56 -169.99 -5.02 16.29 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 22 C 0.14 3.31 5.72 -4.04 -0.02 3.28 16 23 C 0.06 1.19 7.36 37.16 0.27 1.46 16 24 O -0.57 -10.83 13.00 -35.23 -0.46 -11.29 16 25 C 0.10 2.29 5.76 -3.71 -0.02 2.27 16 26 N -0.51 -6.81 7.40 24.84 0.18 -6.62 16 27 S 0.42 3.95 23.20 -107.50 -2.49 1.45 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.17 2.07 8.04 -52.49 -0.42 1.65 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.13 1.92 3.87 -81.72 -0.32 1.60 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 36 H 0.07 1.33 7.63 -51.93 -0.40 0.93 16 37 H 0.06 1.19 7.09 -51.93 -0.37 0.82 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.03 0.64 7.82 -51.93 -0.41 0.23 16 40 H 0.12 3.25 5.17 -51.93 -0.27 2.98 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.35 4.95 9.12 45.56 0.42 5.37 16 44 H 0.08 1.81 7.50 -51.93 -0.39 1.42 16 45 H 0.09 2.17 7.02 -51.93 -0.36 1.80 16 LS Contribution 371.38 15.07 5.60 5.60 Total: -1.00 -31.42 371.38 -9.58 -41.00 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -5.79 Total: 8.28 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -1.38 Total: 7.49 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.12 Total: -57.07 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.37 Total: -23.04 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -2.49 Total: 1.45 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.42 -9.58 -41.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264630481.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.891 kcal (2) G-P(sol) polarization free energy of solvation -31.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds