Wall clock time and date at job start Tue Mar 31 2020 22:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35008 * 127.27191 * 2 1 4 4 C 1.39488 * 111.67813 * 180.13816 * 3 2 1 5 5 C 1.47692 * 122.09874 * 179.78847 * 4 3 2 6 6 O 1.21578 * 119.99818 * 16.28354 * 5 4 3 7 7 N 1.34777 * 119.99883 * 196.28530 * 5 4 3 8 8 C 1.46928 * 120.63217 * 359.25957 * 7 5 4 9 9 C 1.53191 * 108.77527 * 126.41225 * 8 7 5 10 10 C 1.53037 * 109.34169 * 54.61971 * 9 8 7 11 11 C 1.53042 * 109.53714 * 298.68395 * 10 9 8 12 12 H 1.09000 * 109.49626 * 301.34423 * 11 10 9 13 13 N 1.46506 * 109.49629 * 181.28079 * 11 10 9 14 14 C 1.36937 * 120.00035 * 300.06795 * 13 11 10 15 15 H 1.07992 * 120.00410 * 41.61025 * 14 13 11 16 16 C 1.38813 * 119.99369 * 221.61372 * 14 13 11 17 17 N 1.31614 * 120.00446 * 6.41279 * 16 14 13 18 18 Si 1.86803 * 119.99686 * 186.41173 * 16 14 13 19 19 H 1.48506 * 109.47155 * 60.00088 * 18 16 14 20 20 H 1.48497 * 109.47424 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47013 * 300.00296 * 18 16 14 22 22 C 1.46503 * 119.99633 * 120.06326 * 13 11 10 23 23 C 1.52998 * 109.47144 * 264.90915 * 22 13 11 24 24 O 1.42901 * 109.46906 * 65.00541 * 23 22 13 25 25 C 1.46933 * 120.63015 * 179.28016 * 7 5 4 26 26 N 1.30605 * 115.79688 * 359.51500 * 4 3 2 27 27 S 1.56146 * 109.79573 * 0.27535 * 26 4 3 28 28 H 1.08998 * 109.46981 * 180.33145 * 1 2 3 29 29 H 1.09003 * 109.46682 * 300.32576 * 1 2 3 30 30 H 1.08998 * 109.47595 * 60.32944 * 1 2 3 31 31 H 1.07992 * 124.15987 * 359.92712 * 3 2 1 32 32 H 1.08992 * 109.58415 * 246.20079 * 8 7 5 33 33 H 1.09002 * 109.58559 * 6.62577 * 8 7 5 34 34 H 1.08998 * 109.49393 * 174.58907 * 9 8 7 35 35 H 1.09008 * 109.49764 * 294.65013 * 9 8 7 36 36 H 1.09002 * 109.48863 * 178.64590 * 10 9 8 37 37 H 1.08996 * 109.43348 * 58.68424 * 10 9 8 38 38 H 0.97000 * 120.00264 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.47407 * 24.91350 * 22 13 11 40 40 H 1.09003 * 109.46810 * 144.91666 * 22 13 11 41 41 H 1.08997 * 109.47160 * 184.99963 * 23 22 13 42 42 H 1.08997 * 109.47316 * 305.00715 * 23 22 13 43 43 H 0.96706 * 114.00321 * 180.02562 * 24 23 22 44 44 H 1.09000 * 109.58518 * 113.80095 * 25 7 5 45 45 H 1.09002 * 109.70296 * 353.44603 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.0744 0.0000 4 6 3.6682 0.6994 -0.0031 5 6 4.7604 1.6935 -0.0084 6 8 4.5305 2.8507 0.2851 7 7 6.0119 1.3178 -0.3386 8 6 6.3084 -0.0801 -0.6799 9 6 7.0058 -0.1176 -2.0433 10 6 8.2337 0.7952 -2.0098 11 6 7.7942 2.2343 -1.7306 12 1 7.0981 2.5586 -2.5041 13 7 8.9671 3.1122 -1.7290 14 6 9.9826 2.8965 -0.8360 15 1 10.3164 1.8902 -0.6306 16 6 10.5829 3.9714 -0.1949 17 7 10.0955 5.1844 -0.3473 18 14 12.0825 3.6963 0.8844 19 1 13.1765 3.1072 0.0710 20 1 12.5298 4.9941 1.4507 21 1 11.7332 2.7684 1.9900 22 6 9.0536 4.2208 -2.6829 23 6 9.8463 3.7744 -3.9131 24 8 9.1277 2.7444 -4.5948 25 6 7.1059 2.2985 -0.3636 26 7 3.8995 -0.5860 0.0045 27 16 2.5473 -1.3667 0.0083 28 1 -0.3633 -1.0276 0.0059 29 1 -0.3633 0.5189 0.8871 30 1 -0.3634 0.5087 -0.8929 31 1 1.9807 2.0981 -0.0011 32 1 6.9637 -0.5101 0.0776 33 1 5.3800 -0.6492 -0.7286 34 1 7.3172 -1.1384 -2.2647 35 1 6.3167 0.2278 -2.8141 36 1 8.7455 0.7518 -2.9712 37 1 8.9110 0.4633 -1.2229 38 1 10.5147 5.9355 0.1011 39 1 8.0498 4.5186 -2.9859 40 1 9.5571 5.0658 -2.2132 41 1 9.9869 4.6232 -4.5823 42 1 10.8183 3.3933 -3.6003 43 1 9.5725 2.4123 -5.3866 44 1 7.8261 2.0624 0.4197 45 1 6.7058 3.2995 -0.2025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264630481.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:14 Heat of formation + Delta-G solvation = -28.936953 kcal Electronic energy + Delta-G solvation = -28274.631139 eV Core-core repulsion = 24419.219424 eV Total energy + Delta-G solvation = -3855.411715 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.86264 -39.90929 -38.82901 -37.74186 -36.35427 -34.48959 -33.66181 -32.88172 -31.30276 -29.28118 -29.07010 -27.44852 -26.15380 -25.12974 -23.71432 -22.29403 -21.85669 -21.26652 -20.20711 -19.52327 -18.48259 -17.99802 -17.79091 -17.13776 -16.99153 -16.56869 -16.15750 -15.65242 -15.47500 -15.27300 -15.11673 -15.01637 -14.65699 -14.28181 -14.16798 -13.98782 -13.97917 -13.79968 -13.63880 -13.26702 -13.09658 -12.92374 -12.81691 -12.53994 -12.31663 -12.13971 -12.03434 -11.99503 -11.83308 -11.59404 -11.46095 -11.27709 -10.70854 -10.66169 -10.56558 -10.32235 -9.89447 -9.58787 -8.46944 -7.73681 -5.52547 -0.51817 0.44481 0.67073 0.75940 1.46302 1.47586 1.53894 1.90008 2.09598 2.49943 3.28916 3.37770 3.57982 3.69030 3.79269 4.08268 4.10916 4.17897 4.24156 4.29203 4.36804 4.46039 4.57115 4.64476 4.67789 4.72907 4.75141 4.79054 4.89682 4.92191 4.95537 5.04218 5.11648 5.16674 5.22134 5.28484 5.31074 5.47614 5.56244 5.59542 5.63978 5.88302 6.36482 6.53791 6.96646 7.09562 7.21034 7.84465 8.42503 9.16592 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016385 B = 0.003176 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.490516 B = 8813.170536 C = 9263.432523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.226 4.226 3 C -0.166 4.166 4 C 0.045 3.955 5 C 0.571 3.429 6 O -0.581 6.581 7 N -0.586 5.586 8 C 0.078 3.922 9 C -0.119 4.119 10 C -0.111 4.111 11 C 0.182 3.818 12 H 0.036 0.964 13 N -0.582 5.582 14 C -0.251 4.251 15 H 0.058 0.942 16 C -0.037 4.037 17 N -0.924 5.924 18 Si 0.961 3.039 19 H -0.275 1.275 20 H -0.294 1.294 21 H -0.280 1.280 22 C 0.134 3.866 23 C 0.075 3.925 24 O -0.579 6.579 25 C 0.120 3.880 26 N -0.541 5.541 27 S 0.524 5.476 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.162 0.838 32 H 0.065 0.935 33 H 0.152 0.848 34 H 0.100 0.900 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.252 0.748 39 H 0.015 0.985 40 H 0.098 0.902 41 H 0.045 0.955 42 H 0.029 0.971 43 H 0.379 0.621 44 H 0.055 0.945 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.082 -16.647 -3.737 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.357 4.357 3 C -0.198 4.198 4 C -0.126 4.126 5 C 0.355 3.645 6 O -0.461 6.461 7 N -0.317 5.317 8 C -0.045 4.045 9 C -0.158 4.158 10 C -0.150 4.150 11 C 0.075 3.925 12 H 0.055 0.945 13 N -0.303 5.303 14 C -0.382 4.382 15 H 0.076 0.924 16 C -0.233 4.233 17 N -0.569 5.569 18 Si 0.789 3.211 19 H -0.200 1.200 20 H -0.220 1.220 21 H -0.206 1.206 22 C 0.008 3.992 23 C -0.004 4.004 24 O -0.385 6.385 25 C -0.004 4.004 26 N -0.377 5.377 27 S 0.682 5.318 28 H 0.118 0.882 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.180 0.820 32 H 0.084 0.916 33 H 0.168 0.832 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.033 0.967 40 H 0.115 0.885 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.227 0.773 44 H 0.073 0.927 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.828 -17.768 -2.999 24.656 hybrid contribution 1.462 2.713 0.287 3.095 sum -15.367 -15.055 -2.712 21.683 Atomic orbital electron populations 1.20442 0.83266 1.05304 1.04513 1.26496 1.04963 0.99028 1.05202 1.21204 0.89797 1.02805 1.05993 1.20697 0.94507 0.89018 1.08419 1.17993 0.82401 0.86715 0.77342 1.90757 1.83273 1.20433 1.51645 1.48222 1.07127 1.11458 1.64852 1.23023 1.04581 0.80441 0.96497 1.21880 0.96627 1.00878 0.96427 1.21761 0.97430 0.94598 1.01255 1.20572 0.87913 0.91958 0.92107 0.94544 1.43782 1.16959 1.32700 1.36816 1.19131 1.10366 0.92338 1.16332 0.92397 1.26060 1.02312 0.95890 0.99032 1.69793 1.42231 0.99317 1.45541 0.85453 0.79932 0.76471 0.79219 1.20033 1.22005 1.20577 1.21301 0.96766 0.93419 0.87751 1.22714 0.94896 0.88972 0.93845 1.86530 1.50627 1.56990 1.44310 1.21988 0.87016 0.90958 1.00485 1.72095 1.29788 1.10289 1.25501 1.80223 0.86127 1.10857 1.54598 0.88240 0.89191 0.89047 0.82019 0.91646 0.83168 0.88192 0.92477 0.91929 0.93372 0.93814 0.96683 0.88481 0.93725 0.95310 0.77328 0.92713 0.93570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.46 71.24 0.75 0.17 16 2 C -0.23 -3.56 6.58 24.94 0.16 -3.40 16 3 C -0.17 -4.08 9.95 21.83 0.22 -3.86 16 4 C 0.04 1.35 6.44 42.13 0.27 1.62 16 5 C 0.57 22.93 7.66 86.74 0.66 23.60 16 6 O -0.58 -27.78 16.17 -3.96 -0.06 -27.84 16 7 N -0.59 -23.29 2.97 -822.46 -2.44 -25.74 16 8 C 0.08 2.46 6.11 86.36 0.53 2.99 16 9 C -0.12 -3.59 6.08 30.67 0.19 -3.41 16 10 C -0.11 -4.26 5.11 30.62 0.16 -4.11 16 11 C 0.18 8.38 2.68 45.07 0.12 8.50 16 12 H 0.04 1.76 7.73 -2.39 -0.02 1.75 16 13 N -0.58 -29.85 2.32 -677.59 -1.57 -31.42 16 14 C -0.25 -13.62 8.10 84.03 0.68 -12.94 16 15 H 0.06 3.12 6.87 -2.91 -0.02 3.10 16 16 C -0.04 -2.02 5.29 84.86 0.45 -1.57 16 17 N -0.92 -54.07 10.85 21.65 0.23 -53.84 16 18 Si 0.96 44.81 29.56 68.60 2.03 46.84 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 C 0.13 6.68 5.72 86.38 0.49 7.18 16 23 C 0.08 3.10 7.36 71.98 0.53 3.63 16 24 O -0.58 -21.41 13.00 -148.98 -1.94 -23.35 16 25 C 0.12 5.70 5.76 86.36 0.50 6.20 16 26 N -0.54 -13.37 7.40 -75.32 -0.56 -13.93 16 27 S 0.52 7.73 23.20 -56.49 -1.31 6.42 16 28 H 0.10 0.26 8.14 -2.39 -0.02 0.25 16 29 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.16 4.10 8.04 -2.91 -0.02 4.08 16 32 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.15 4.20 3.87 -61.20 -0.24 3.96 16 34 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.06 2.45 7.63 -2.39 -0.02 2.43 16 37 H 0.05 1.94 7.09 -2.39 -0.02 1.93 16 38 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 39 H 0.01 0.75 7.82 -2.39 -0.02 0.73 16 40 H 0.10 5.43 5.17 -2.39 -0.01 5.42 16 41 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.38 9.81 9.12 -74.05 -0.68 9.13 16 44 H 0.05 2.78 7.50 -2.39 -0.02 2.76 16 45 H 0.05 2.53 7.02 -2.39 -0.02 2.51 16 Total: -1.00 -73.65 371.38 0.20 -73.46 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 0.12 Total: 24.81 kcal Atomic # 6 Polarization: 18.88 SS G_CDS: 5.70 Total: 24.59 kcal Atomic # 7 Polarization: -120.58 SS G_CDS: -4.34 Total: -124.92 kcal Atomic # 8 Polarization: -49.19 SS G_CDS: -2.00 Total: -51.19 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: 7.73 SS G_CDS: -1.31 Total: 6.42 kcal Total: -73.65 0.20 -73.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264630481.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.519 kcal (2) G-P(sol) polarization free energy of solvation -73.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds