Wall clock time and date at job start Tue Mar 31 2020 22:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30259 * 125.61994 * 2 1 4 4 C 1.34483 * 108.69659 * 179.73572 * 3 2 1 5 5 C 1.50705 * 126.16125 * 180.26768 * 4 3 2 6 6 C 1.34322 * 107.67149 * 0.38783 * 4 3 2 7 7 C 1.50705 * 126.44441 * 179.87677 * 6 4 3 8 8 N 1.46895 * 109.46820 * 89.71380 * 7 6 4 9 9 C 1.48562 * 111.00142 * 54.58144 * 8 7 6 10 10 C 1.54377 * 104.59407 * 159.03785 * 9 8 7 11 11 C 1.54266 * 105.06190 * 336.14868 * 10 9 8 12 12 H 1.09000 * 110.32532 * 240.99801 * 11 10 9 13 13 N 1.46501 * 110.32047 * 118.89565 * 11 10 9 14 14 C 1.34773 * 120.00101 * 86.46129 * 13 11 10 15 15 O 1.21284 * 120.00364 * 359.97438 * 14 13 11 16 16 C 1.50705 * 120.00044 * 179.97438 * 14 13 11 17 17 S 1.81005 * 109.47130 * 179.97438 * 16 14 13 18 18 C 1.76193 * 100.00128 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99900 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00127 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00137 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99901 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47342 * 60.00091 * 22 20 18 24 24 H 1.48505 * 109.47021 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47429 * 300.00268 * 22 20 18 26 26 C 1.48562 * 110.99842 * 170.00307 * 8 7 6 27 27 O 1.33965 * 125.62023 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47396 * 270.02978 * 1 2 3 29 29 H 1.09001 * 109.46795 * 30.02445 * 1 2 3 30 30 H 1.09000 * 109.47362 * 150.02879 * 1 2 3 31 31 H 1.09005 * 109.47086 * 270.14495 * 5 4 3 32 32 H 1.08998 * 109.46798 * 30.14292 * 5 4 3 33 33 H 1.08997 * 109.46917 * 150.14474 * 5 4 3 34 34 H 1.08998 * 109.46894 * 329.71291 * 7 6 4 35 35 H 1.08997 * 109.47311 * 209.71456 * 7 6 4 36 36 H 1.09000 * 110.41111 * 40.26361 * 9 8 7 37 37 H 1.08989 * 110.41482 * 277.81625 * 9 8 7 38 38 H 1.09005 * 110.32720 * 217.25400 * 10 9 8 39 39 H 1.09003 * 110.32570 * 95.04509 * 10 9 8 40 40 H 0.96998 * 119.99846 * 266.44964 * 13 11 10 41 41 H 1.08996 * 109.47181 * 299.99493 * 16 14 13 42 42 H 1.08996 * 109.47197 * 59.99729 * 16 14 13 43 43 H 0.96996 * 120.00403 * 179.97438 * 21 20 18 44 44 H 1.08998 * 110.41528 * 82.17831 * 26 8 7 45 45 H 1.08997 * 110.50874 * 319.78619 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6674 0.0059 5 6 4.7571 1.5726 0.0136 6 6 3.5698 -0.6757 0.0009 7 6 4.7937 -1.5550 0.0019 8 7 5.1904 -1.8403 1.3873 9 6 4.0591 -2.4193 2.1566 10 6 4.7271 -3.1436 3.3450 11 6 6.1618 -3.4537 2.8703 12 1 6.3350 -4.5298 2.8665 13 7 7.1389 -2.7850 3.7330 14 6 7.5621 -3.3850 4.8632 15 8 7.1337 -4.4785 5.1662 16 6 8.5677 -2.6973 5.7504 17 16 8.9310 -3.7487 7.1783 18 6 10.0979 -2.7306 8.0188 19 1 10.3737 -1.7715 7.6060 20 6 10.6618 -3.1608 9.2118 21 7 10.3252 -4.3295 9.7152 22 14 11.8994 -2.0817 10.1025 23 1 11.2647 -0.7856 10.4525 24 1 12.3491 -2.7640 11.3425 25 1 13.0688 -1.8378 9.2204 26 6 6.2398 -2.8907 1.4349 27 8 2.2872 -1.0890 0.0005 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5134 31 1 5.0513 1.7948 -1.0122 32 1 4.5111 2.5004 0.5301 33 1 5.5803 1.0773 0.5286 34 1 5.6083 -1.0444 -0.5115 35 1 4.5699 -2.4899 -0.5117 36 1 3.5050 -3.1288 1.5419 37 1 3.3993 -1.6293 2.5151 38 1 4.1956 -4.0677 3.5725 39 1 4.7500 -2.4938 4.2199 40 1 7.4813 -1.9104 3.4908 41 1 9.4843 -2.5171 5.1889 42 1 8.1592 -1.7470 6.0939 43 1 10.7195 -4.6303 10.5488 44 1 7.2220 -2.4556 1.2501 45 1 6.0291 -3.6744 0.7073 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265270441.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:31 Heat of formation + Delta-G solvation = -10.783288 kcal Electronic energy + Delta-G solvation = -26320.856905 eV Core-core repulsion = 22466.232392 eV Total energy + Delta-G solvation = -3854.624513 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.69176 -39.96922 -38.37345 -35.49959 -34.77952 -33.20832 -32.41769 -31.47498 -29.70227 -29.53371 -28.61618 -27.10220 -25.45763 -24.53013 -22.13769 -21.69029 -21.34056 -20.66667 -20.19365 -17.86989 -17.35800 -17.00425 -16.59480 -16.35603 -15.73242 -15.40043 -15.14439 -14.80121 -14.79204 -14.37815 -14.09144 -13.85551 -13.69476 -13.43352 -13.33092 -13.15285 -13.03337 -12.81801 -12.69309 -12.42368 -12.32735 -12.17434 -12.09961 -11.70078 -11.45611 -11.18804 -11.08167 -11.03312 -11.02669 -10.79656 -10.75239 -9.81236 -9.38299 -9.18344 -9.05100 -8.87750 -8.74153 -8.22817 -6.48776 -6.20465 -3.90952 1.04966 2.24477 2.32499 3.04397 3.09863 3.24464 3.28434 3.32304 3.57614 3.65358 3.73801 4.16647 4.21733 4.25590 4.48344 4.58833 4.63015 4.89832 4.90828 4.92658 4.94888 5.00332 5.12171 5.14275 5.14588 5.17658 5.30277 5.34432 5.39489 5.45607 5.49600 5.58518 5.66096 5.69564 5.75054 5.85010 5.91420 6.02276 6.06401 6.16584 6.33513 6.43230 6.70369 7.42626 7.60499 7.75415 8.36231 8.63502 9.24754 10.86893 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021126 B = 0.001916 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.052588 B =14608.133261 C =15056.264407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.191 3.809 3 N -0.484 5.484 4 C 0.011 3.989 5 C -0.074 4.074 6 C -0.052 4.052 7 C 0.133 3.867 8 N -0.505 5.505 9 C 0.036 3.964 10 C -0.135 4.135 11 C 0.147 3.853 12 H 0.097 0.903 13 N -0.728 5.728 14 C 0.533 3.467 15 O -0.519 6.519 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.025 3.975 27 O -0.202 6.202 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.401 0.599 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.095 0.905 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.054 8.455 -24.646 30.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.016 4.016 3 N -0.214 5.214 4 C -0.109 4.109 5 C -0.131 4.131 6 C -0.105 4.105 7 C 0.005 3.995 8 N -0.229 5.229 9 C -0.091 4.091 10 C -0.174 4.174 11 C 0.041 3.959 12 H 0.115 0.885 13 N -0.382 5.382 14 C 0.319 3.681 15 O -0.393 6.393 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.103 4.103 27 O -0.089 6.089 28 H 0.112 0.888 29 H 0.119 0.881 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.129 0.871 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.236 0.764 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.113 0.887 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.800 7.551 -23.776 30.076 hybrid contribution 1.276 1.002 -0.271 1.645 sum -15.525 8.554 -24.046 29.873 Atomic orbital electron populations 1.20263 0.81321 1.05047 1.04812 1.26227 0.96378 0.78698 1.00295 1.70387 1.01784 1.30302 1.18971 1.21519 0.93278 0.92071 1.04064 1.20165 0.92151 0.98117 1.02643 1.22821 0.83221 0.94847 1.09602 1.20639 0.90315 0.97155 0.91400 1.65635 1.08417 1.38780 1.10108 1.23117 0.93266 0.97767 0.94987 1.22804 0.95411 1.00987 0.98230 1.21522 0.88327 0.98020 0.88021 0.88515 1.46060 1.45441 1.22595 1.24110 1.20327 0.81507 0.85685 0.80578 1.90697 1.56835 1.20228 1.71559 1.23529 0.99839 1.04616 1.02389 1.85376 1.55667 1.24709 1.17649 1.22830 1.28690 1.06446 1.10424 0.90973 1.24990 0.96814 0.95496 0.96300 1.70006 1.41885 1.18544 1.19890 0.86226 0.80630 0.79966 0.78677 1.19935 1.20832 1.19945 1.23466 0.96948 0.93396 0.96479 1.84373 1.16605 1.37716 1.70206 0.88828 0.88115 0.89389 0.90942 0.90609 0.89840 0.87105 0.92558 0.93461 0.90414 0.90402 0.90058 0.76428 0.89231 0.89229 0.92150 0.88685 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.27 10.51 36.00 0.38 0.11 16 2 C 0.19 1.79 8.34 -12.95 -0.11 1.68 16 3 N -0.48 -5.47 11.30 -7.36 -0.08 -5.55 16 4 C 0.01 0.12 7.11 -82.81 -0.59 -0.47 16 5 C -0.07 -0.57 10.05 36.01 0.36 -0.20 16 6 C -0.05 -0.50 5.74 -35.69 -0.20 -0.70 16 7 C 0.13 0.98 5.22 -4.98 -0.03 0.95 16 8 N -0.50 -4.33 5.48 -231.42 -1.27 -5.59 16 9 C 0.04 0.35 5.43 -2.18 -0.01 0.34 16 10 C -0.13 -1.51 6.78 -25.35 -0.17 -1.69 16 11 C 0.15 1.66 3.36 -66.54 -0.22 1.43 16 12 H 0.10 1.23 7.64 -51.93 -0.40 0.83 16 13 N -0.73 -9.47 5.00 -52.46 -0.26 -9.73 16 14 C 0.53 9.74 7.84 -10.98 -0.09 9.65 16 15 O -0.52 -11.54 15.56 5.55 0.09 -11.45 16 16 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 18 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 22 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.03 0.20 6.10 -2.18 -0.01 0.19 16 27 O -0.20 -2.03 10.60 5.37 0.06 -1.98 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.58 7.80 -51.93 -0.40 0.17 16 34 H 0.11 0.62 7.81 -51.93 -0.41 0.21 16 35 H 0.06 0.38 7.88 -51.93 -0.41 -0.03 16 36 H 0.05 0.44 8.00 -51.93 -0.42 0.02 16 37 H 0.08 0.85 7.92 -51.93 -0.41 0.43 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 1.06 7.95 -51.93 -0.41 0.64 16 40 H 0.40 4.28 8.56 -40.82 -0.35 3.93 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 42 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.09 0.67 7.99 -51.93 -0.41 0.26 16 45 H 0.06 0.42 7.82 -51.93 -0.41 0.01 16 LS Contribution 390.84 15.07 5.89 5.89 Total: -1.00 -36.22 390.84 -9.31 -45.53 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.95 Total: 0.34 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -0.27 Total: -4.55 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -0.88 Total: -46.36 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.14 Total: -13.43 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.22 -9.31 -45.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265270441.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.749 kcal (2) G-P(sol) polarization free energy of solvation -36.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds