Wall clock time and date at job start Tue Mar 31 2020 22:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34334 * 126.44442 * 2 1 4 4 N 1.34477 * 107.67069 * 179.97438 * 3 2 1 5 5 C 1.30264 * 108.69886 * 0.02562 * 4 3 2 6 6 C 1.50700 * 125.61571 * 179.97438 * 5 4 3 7 7 H 1.09005 * 109.46796 * 195.02341 * 6 5 4 8 8 C 1.52999 * 109.47061 * 75.02602 * 6 5 4 9 9 N 1.46895 * 109.47100 * 315.02385 * 6 5 4 10 10 C 1.48527 * 111.00320 * 307.39613 * 9 6 5 11 11 C 1.54934 * 103.22882 * 200.27877 * 10 9 6 12 12 C 1.54594 * 102.91983 * 37.41580 * 11 10 9 13 13 H 1.09004 * 110.39434 * 97.00173 * 12 11 10 14 14 N 1.46500 * 110.30828 * 219.12411 * 12 11 10 15 15 C 1.34779 * 120.00169 * 270.71383 * 14 12 11 16 16 O 1.21282 * 119.99922 * 0.02562 * 15 14 12 17 17 C 1.50699 * 120.00037 * 180.02562 * 15 14 12 18 18 S 1.81000 * 109.46881 * 180.02562 * 17 15 14 19 19 C 1.76206 * 99.99929 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99720 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99847 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00398 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99778 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46907 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47393 * 119.99621 * 23 21 19 26 26 H 1.48503 * 109.46784 * 240.00115 * 23 21 19 27 27 C 1.47909 * 110.99784 * 190.00066 * 9 6 5 28 28 O 1.33966 * 108.76047 * 0.22721 * 5 4 3 29 29 H 1.08991 * 109.47278 * 90.02442 * 1 2 3 30 30 H 1.09005 * 109.46715 * 210.02473 * 1 2 3 31 31 H 1.08995 * 109.46949 * 330.01825 * 1 2 3 32 32 H 1.07996 * 126.16279 * 0.02562 * 3 2 1 33 33 H 1.09005 * 109.47125 * 179.97438 * 8 6 5 34 34 H 1.08992 * 109.47320 * 299.99771 * 8 6 5 35 35 H 1.09001 * 109.47093 * 59.99906 * 8 6 5 36 36 H 1.09000 * 110.66467 * 318.71704 * 10 9 6 37 37 H 1.09003 * 110.66857 * 81.67733 * 10 9 6 38 38 H 1.08998 * 110.72522 * 279.05526 * 11 10 9 39 39 H 1.09002 * 110.72072 * 155.76782 * 11 10 9 40 40 H 0.96996 * 119.99986 * 90.71980 * 14 12 11 41 41 H 1.09000 * 109.47247 * 60.00371 * 17 15 14 42 42 H 1.09001 * 109.47358 * 299.99798 * 17 15 14 43 43 H 0.96996 * 120.00393 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.91674 * 26.49134 * 27 9 6 45 45 H 1.08999 * 110.07874 * 265.29037 * 27 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 0.0006 5 6 3.5765 -0.6548 0.0004 6 6 4.8005 -1.5340 0.0003 7 1 4.5164 -2.5521 -0.2663 8 6 5.4320 -1.5290 1.3938 9 7 5.7698 -1.0238 -0.9785 10 6 5.1379 -0.8467 -2.3109 11 6 6.3480 -0.8330 -3.2782 12 6 7.2982 -1.8829 -2.6579 13 1 7.1764 -2.8457 -3.1543 14 7 8.6886 -1.4325 -2.7581 15 6 9.4196 -1.7393 -3.8481 16 8 8.9261 -2.3879 -4.7463 17 6 10.8500 -1.2764 -3.9509 18 16 11.5558 -1.8416 -5.5189 19 6 13.1832 -1.1809 -5.3777 20 1 13.4637 -0.6196 -4.4986 21 6 14.1042 -1.3809 -6.3966 22 7 13.7622 -2.0645 -7.4682 23 14 15.8297 -0.6810 -6.2466 24 1 15.9605 0.0407 -4.9554 25 1 16.8188 -1.7873 -6.2982 26 1 16.0810 0.2606 -7.3671 27 6 6.8748 -1.9858 -1.1810 28 8 2.3075 -1.0840 -0.0054 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3633 0.8901 0.5135 32 1 1.9822 2.1112 0.0004 33 1 6.3171 -2.1653 1.3939 34 1 5.7160 -0.5111 1.6604 35 1 4.7127 -1.9076 2.1201 36 1 4.4746 -1.6818 -2.5362 37 1 4.5948 0.0974 -2.3567 38 1 6.8177 0.1504 -3.2945 39 1 6.0437 -1.1330 -4.2810 40 1 9.0832 -0.9135 -2.0400 41 1 11.4260 -1.6895 -3.1229 42 1 10.8835 -0.1877 -3.9094 43 1 14.4059 -2.2046 -8.1801 44 1 6.5315 -2.9971 -0.9626 45 1 7.7153 -1.7317 -0.5352 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265270531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:06 Heat of formation + Delta-G solvation = -4.174707 kcal Electronic energy + Delta-G solvation = -26269.184777 eV Core-core repulsion = 22414.846833 eV Total energy + Delta-G solvation = -3854.337943 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.70326 -40.03614 -38.54587 -35.38743 -34.84638 -33.18936 -32.41634 -32.21838 -29.81736 -29.15127 -27.85589 -26.89757 -25.46019 -24.08118 -22.60062 -21.82920 -21.13858 -20.59237 -20.27516 -17.93870 -17.55997 -17.16254 -16.61719 -16.52619 -15.80526 -15.45464 -14.86865 -14.79339 -14.61944 -14.41899 -14.27509 -13.94089 -13.67595 -13.60672 -13.27084 -13.12104 -12.96982 -12.83432 -12.60468 -12.38582 -12.18637 -12.09896 -11.78870 -11.65137 -11.54742 -11.48443 -11.06042 -11.00861 -10.95846 -10.74071 -10.74018 -9.79108 -9.38789 -9.06690 -9.03863 -8.93139 -8.80037 -8.21655 -6.48413 -6.20574 -3.90827 1.04389 2.12300 2.37027 3.04098 3.09453 3.22755 3.29349 3.34069 3.48872 3.62023 3.74958 4.21667 4.27622 4.34203 4.46110 4.53526 4.63716 4.76729 4.87320 4.89950 4.94762 5.00621 5.06515 5.11485 5.14812 5.18011 5.23609 5.32182 5.42896 5.48211 5.54142 5.63342 5.66573 5.72034 5.79605 5.88760 5.92005 5.96607 6.04781 6.16998 6.45291 6.50347 6.68263 7.45089 7.61434 7.73549 8.36925 8.62864 9.25067 10.86931 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033058 B = 0.001763 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.788136 B =15881.485082 C =16036.017011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.052 4.052 3 C -0.045 4.045 4 N -0.450 5.450 5 C 0.190 3.810 6 C 0.174 3.826 7 H 0.070 0.930 8 C -0.139 4.139 9 N -0.494 5.494 10 C 0.036 3.964 11 C -0.132 4.132 12 C 0.140 3.860 13 H 0.097 0.903 14 N -0.729 5.729 15 C 0.534 3.466 16 O -0.518 6.518 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.031 3.969 28 O -0.204 6.204 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.183 0.817 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.044 0.956 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.401 0.599 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.059 0.941 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.721 2.907 19.654 32.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.105 4.105 3 C -0.184 4.184 4 N -0.178 5.178 5 C -0.018 4.018 6 C 0.064 3.936 7 H 0.088 0.912 8 C -0.197 4.197 9 N -0.220 5.220 10 C -0.092 4.092 11 C -0.171 4.171 12 C 0.033 3.967 13 H 0.115 0.885 14 N -0.384 5.384 15 C 0.320 3.680 16 O -0.393 6.393 17 C -0.304 4.304 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.097 4.097 28 O -0.091 6.091 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.200 0.800 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.235 0.765 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -25.763 2.548 18.193 31.642 hybrid contribution 0.791 0.416 1.152 1.458 sum -24.972 2.965 19.345 31.727 Atomic orbital electron populations 1.20272 0.83963 1.04350 1.03865 1.23500 0.95018 0.84654 1.07308 1.23198 0.87969 1.00384 1.06819 1.70497 1.22250 1.08868 1.16196 1.25917 0.83696 0.90454 1.01711 1.20079 0.84442 0.92883 0.96161 0.91214 1.21829 1.00905 1.04294 0.92715 1.64851 1.07955 1.42312 1.06929 1.23269 0.96656 1.01556 0.87732 1.22936 0.94914 1.00605 0.98652 1.21672 0.81870 0.98787 0.94329 0.88479 1.46082 1.12043 1.57972 1.22272 1.20331 0.87587 0.78862 0.81240 1.90696 1.72374 1.38130 1.38058 1.23532 0.94616 1.04578 1.07671 1.85386 1.11042 1.71546 1.15497 1.22917 0.97372 1.40156 1.07833 0.90851 1.24990 0.99135 0.94990 0.94482 1.70024 1.35345 1.37813 1.07147 0.86118 0.82400 0.78717 0.78271 1.19601 1.20580 1.20580 1.23202 0.95200 0.94643 0.96638 1.84375 1.17827 1.36809 1.70069 0.89744 0.90392 0.88930 0.80014 0.90736 0.90387 0.91838 0.93747 0.89551 0.89818 0.90142 0.76461 0.89191 0.89160 0.92256 0.92274 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.26 10.43 36.00 0.38 0.12 16 2 C -0.05 -0.41 7.39 -35.69 -0.26 -0.68 16 3 C -0.04 -0.40 11.80 -17.77 -0.21 -0.61 16 4 N -0.45 -5.09 10.89 -11.10 -0.12 -5.21 16 5 C 0.19 1.94 5.89 -12.94 -0.08 1.87 16 6 C 0.17 1.49 2.41 -68.87 -0.17 1.32 16 7 H 0.07 0.52 7.81 -51.93 -0.41 0.12 16 8 C -0.14 -0.98 9.23 37.16 0.34 -0.63 16 9 N -0.49 -4.72 5.09 -223.89 -1.14 -5.86 16 10 C 0.04 0.37 5.57 -1.90 -0.01 0.35 16 11 C -0.13 -1.52 6.78 -24.87 -0.17 -1.69 16 12 C 0.14 1.62 3.34 -66.58 -0.22 1.40 16 13 H 0.10 1.28 7.56 -51.93 -0.39 0.88 16 14 N -0.73 -9.57 5.06 -52.49 -0.27 -9.84 16 15 C 0.53 9.79 7.85 -10.99 -0.09 9.71 16 16 O -0.52 -11.58 15.51 5.56 0.09 -11.49 16 17 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 19 C -0.53 -15.27 9.50 30.94 0.29 -14.98 16 20 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 23 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 C 0.03 0.27 5.57 -2.75 -0.02 0.26 16 28 O -0.20 -2.03 10.78 5.36 0.06 -1.97 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.07 0.43 7.52 -51.93 -0.39 0.04 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.04 0.43 8.02 -51.93 -0.42 0.02 16 37 H 0.09 0.98 7.57 -51.93 -0.39 0.59 16 38 H 0.08 1.04 8.06 -51.93 -0.42 0.62 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.40 4.22 8.35 -40.82 -0.34 3.88 16 41 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 42 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.06 0.44 7.57 -51.93 -0.39 0.05 16 45 H 0.09 0.74 7.65 -51.93 -0.40 0.34 16 LS Contribution 388.81 15.07 5.86 5.86 Total: -1.00 -36.03 388.81 -9.00 -45.03 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.90 Total: 0.83 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -0.08 Total: -4.42 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: -0.79 Total: -46.41 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.14 Total: -13.46 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.03 -9.00 -45.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265270531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.853 kcal (2) G-P(sol) polarization free energy of solvation -36.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds