Wall clock time and date at job start Tue Mar 31 2020 22:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34334 * 126.44442 * 2 1 4 4 N 1.34477 * 107.67069 * 179.97438 * 3 2 1 5 5 C 1.30264 * 108.69886 * 0.02562 * 4 3 2 6 6 C 1.50700 * 125.61571 * 179.97438 * 5 4 3 7 7 H 1.09005 * 109.46796 * 195.02341 * 6 5 4 8 8 C 1.52999 * 109.47061 * 75.02602 * 6 5 4 9 9 N 1.46895 * 109.47100 * 315.02385 * 6 5 4 10 10 C 1.48527 * 111.00320 * 307.39613 * 9 6 5 11 11 C 1.54934 * 103.22882 * 200.27877 * 10 9 6 12 12 C 1.54594 * 102.91983 * 37.41580 * 11 10 9 13 13 H 1.09004 * 110.39434 * 97.00173 * 12 11 10 14 14 N 1.46500 * 110.30828 * 219.12411 * 12 11 10 15 15 C 1.34779 * 120.00169 * 270.71383 * 14 12 11 16 16 O 1.21282 * 119.99922 * 0.02562 * 15 14 12 17 17 C 1.50699 * 120.00037 * 180.02562 * 15 14 12 18 18 S 1.81000 * 109.46881 * 180.02562 * 17 15 14 19 19 C 1.76206 * 99.99929 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99720 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99847 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00398 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99778 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46907 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47393 * 119.99621 * 23 21 19 26 26 H 1.48503 * 109.46784 * 240.00115 * 23 21 19 27 27 C 1.47909 * 110.99784 * 190.00066 * 9 6 5 28 28 O 1.33966 * 108.76047 * 0.22721 * 5 4 3 29 29 H 1.08991 * 109.47278 * 90.02442 * 1 2 3 30 30 H 1.09005 * 109.46715 * 210.02473 * 1 2 3 31 31 H 1.08995 * 109.46949 * 330.01825 * 1 2 3 32 32 H 1.07996 * 126.16279 * 0.02562 * 3 2 1 33 33 H 1.09005 * 109.47125 * 179.97438 * 8 6 5 34 34 H 1.08992 * 109.47320 * 299.99771 * 8 6 5 35 35 H 1.09001 * 109.47093 * 59.99906 * 8 6 5 36 36 H 1.09000 * 110.66467 * 318.71704 * 10 9 6 37 37 H 1.09003 * 110.66857 * 81.67733 * 10 9 6 38 38 H 1.08998 * 110.72522 * 279.05526 * 11 10 9 39 39 H 1.09002 * 110.72072 * 155.76782 * 11 10 9 40 40 H 0.96996 * 119.99986 * 90.71980 * 14 12 11 41 41 H 1.09000 * 109.47247 * 60.00371 * 17 15 14 42 42 H 1.09001 * 109.47358 * 299.99798 * 17 15 14 43 43 H 0.96996 * 120.00393 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.91674 * 26.49134 * 27 9 6 45 45 H 1.08999 * 110.07874 * 265.29037 * 27 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 0.0006 5 6 3.5765 -0.6548 0.0004 6 6 4.8005 -1.5340 0.0003 7 1 4.5164 -2.5521 -0.2663 8 6 5.4320 -1.5290 1.3938 9 7 5.7698 -1.0238 -0.9785 10 6 5.1379 -0.8467 -2.3109 11 6 6.3480 -0.8330 -3.2782 12 6 7.2982 -1.8829 -2.6579 13 1 7.1764 -2.8457 -3.1543 14 7 8.6886 -1.4325 -2.7581 15 6 9.4196 -1.7393 -3.8481 16 8 8.9261 -2.3879 -4.7463 17 6 10.8500 -1.2764 -3.9509 18 16 11.5558 -1.8416 -5.5189 19 6 13.1832 -1.1809 -5.3777 20 1 13.4637 -0.6196 -4.4986 21 6 14.1042 -1.3809 -6.3966 22 7 13.7622 -2.0645 -7.4682 23 14 15.8297 -0.6810 -6.2466 24 1 15.9605 0.0407 -4.9554 25 1 16.8188 -1.7873 -6.2982 26 1 16.0810 0.2606 -7.3671 27 6 6.8748 -1.9858 -1.1810 28 8 2.3075 -1.0840 -0.0054 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3633 0.8901 0.5135 32 1 1.9822 2.1112 0.0004 33 1 6.3171 -2.1653 1.3939 34 1 5.7160 -0.5111 1.6604 35 1 4.7127 -1.9076 2.1201 36 1 4.4746 -1.6818 -2.5362 37 1 4.5948 0.0974 -2.3567 38 1 6.8177 0.1504 -3.2945 39 1 6.0437 -1.1330 -4.2810 40 1 9.0832 -0.9135 -2.0400 41 1 11.4260 -1.6895 -3.1229 42 1 10.8835 -0.1877 -3.9094 43 1 14.4059 -2.2046 -8.1801 44 1 6.5315 -2.9971 -0.9626 45 1 7.7153 -1.7317 -0.5352 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265270531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:06 Heat of formation + Delta-G solvation = -32.631896 kcal Electronic energy + Delta-G solvation = -26270.418773 eV Core-core repulsion = 22414.846833 eV Total energy + Delta-G solvation = -3855.571940 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.36766 -41.11616 -39.72457 -36.31785 -35.61051 -34.57853 -34.14500 -32.83352 -31.16176 -29.91525 -28.88892 -27.67584 -27.45741 -24.75599 -23.32891 -22.63292 -22.15446 -21.56400 -21.24214 -19.84415 -18.40670 -17.90877 -17.80937 -17.55229 -16.89542 -16.85443 -16.36930 -16.24077 -15.82514 -15.29863 -15.06416 -14.91498 -14.70085 -14.48414 -14.24852 -14.09846 -13.91485 -13.66978 -13.54436 -13.23499 -13.15031 -13.06025 -12.91166 -12.87564 -12.77084 -12.56002 -12.43538 -12.32056 -12.25399 -11.91569 -11.69553 -11.44290 -11.15044 -10.93144 -10.25853 -10.12762 -9.64509 -9.56142 -8.65147 -8.34038 -6.11619 0.40352 1.28033 1.42007 1.47223 1.51827 1.59512 1.62884 1.69711 2.25925 2.30561 2.77577 3.00282 3.03211 3.32515 3.43283 3.65657 3.79893 3.98535 3.98909 4.04679 4.09960 4.15731 4.19103 4.26836 4.33473 4.41843 4.53552 4.53875 4.59538 4.65896 4.72798 4.76737 4.80088 4.87854 4.92691 5.04343 5.04753 5.17314 5.24836 5.33558 5.43328 5.50827 5.68828 5.79627 6.21078 6.52673 6.77815 7.07644 7.26359 8.75419 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033058 B = 0.001763 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.788136 B =15881.485082 C =16036.017011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.049 4.049 3 C -0.067 4.067 4 N -0.479 5.479 5 C 0.176 3.824 6 C 0.172 3.828 7 H 0.084 0.916 8 C -0.133 4.133 9 N -0.501 5.501 10 C 0.048 3.952 11 C -0.129 4.129 12 C 0.138 3.862 13 H 0.083 0.917 14 N -0.703 5.703 15 C 0.537 3.463 16 O -0.565 6.565 17 C -0.130 4.130 18 S -0.151 6.151 19 C -0.546 4.546 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.257 1.257 25 H -0.273 1.273 26 H -0.275 1.275 27 C 0.040 3.960 28 O -0.216 6.216 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.114 0.886 32 H 0.202 0.798 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.417 0.583 41 H 0.112 0.888 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.080 0.920 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.994 3.559 22.172 34.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.101 4.101 3 C -0.205 4.205 4 N -0.208 5.208 5 C -0.031 4.031 6 C 0.063 3.937 7 H 0.101 0.899 8 C -0.191 4.191 9 N -0.227 5.227 10 C -0.080 4.080 11 C -0.169 4.169 12 C 0.032 3.968 13 H 0.101 0.899 14 N -0.357 5.357 15 C 0.323 3.677 16 O -0.443 6.443 17 C -0.281 4.281 18 S 0.076 5.924 19 C -0.694 4.694 20 H 0.101 0.899 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.180 1.180 25 H -0.199 1.199 26 H -0.200 1.200 27 C -0.087 4.087 28 O -0.103 6.103 29 H 0.114 0.886 30 H 0.103 0.897 31 H 0.132 0.868 32 H 0.219 0.781 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.255 0.745 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -26.064 3.224 20.774 33.486 hybrid contribution 0.705 0.254 0.445 0.871 sum -25.360 3.478 21.219 33.248 Atomic orbital electron populations 1.20492 0.81069 1.05783 1.04961 1.24266 0.96531 0.83914 1.05438 1.23607 0.87519 1.01719 1.07671 1.70452 1.23708 1.09655 1.17008 1.26210 0.84254 0.90493 1.02122 1.20238 0.83857 0.93092 0.96543 0.89881 1.21801 1.01679 1.03752 0.91871 1.64848 1.08412 1.42975 1.06491 1.23076 0.95878 1.01125 0.87963 1.22843 0.95579 0.99952 0.98498 1.21783 0.80531 0.97936 0.96554 0.89910 1.45825 1.12328 1.56663 1.20886 1.20043 0.87156 0.78564 0.81929 1.90688 1.73020 1.40495 1.40059 1.23377 0.95607 1.05441 1.03691 1.85556 1.12391 1.72887 1.21568 1.23250 0.97575 1.40186 1.08343 0.89913 1.26117 1.04001 0.95131 0.93889 1.70184 1.37118 1.39322 1.08182 0.84909 0.76171 0.78032 0.78857 1.18040 1.19886 1.20011 1.23176 0.95498 0.95717 0.94333 1.84380 1.18028 1.37650 1.70243 0.88650 0.89673 0.86758 0.78132 0.89050 0.91904 0.90983 0.93243 0.90845 0.90709 0.91427 0.74477 0.87016 0.87416 0.92015 0.90235 0.87208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.43 71.24 0.74 0.38 16 2 C -0.05 -0.72 7.39 24.79 0.18 -0.54 16 3 C -0.07 -1.14 11.80 83.40 0.98 -0.16 16 4 N -0.48 -10.64 10.89 -303.82 -3.31 -13.95 16 5 C 0.18 3.47 5.89 88.34 0.52 3.99 16 6 C 0.17 2.65 2.41 44.17 0.11 2.75 16 7 H 0.08 1.05 7.81 -2.38 -0.02 1.04 16 8 C -0.13 -1.59 9.23 71.98 0.66 -0.92 16 9 N -0.50 -8.74 5.09 -862.25 -4.39 -13.13 16 10 C 0.05 0.95 5.57 86.65 0.48 1.43 16 11 C -0.13 -2.97 6.78 31.80 0.22 -2.75 16 12 C 0.14 3.03 3.34 45.87 0.15 3.19 16 13 H 0.08 2.14 7.56 -2.38 -0.02 2.12 16 14 N -0.70 -17.33 5.06 -438.38 -2.22 -19.55 16 15 C 0.54 19.46 7.85 87.66 0.69 20.15 16 16 O -0.56 -25.76 15.51 -3.04 -0.05 -25.80 16 17 C -0.13 -5.11 6.16 71.24 0.44 -4.67 16 18 S -0.15 -8.40 20.57 -56.49 -1.16 -9.56 16 19 C -0.55 -31.25 9.50 67.95 0.65 -30.60 16 20 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 21 C 0.01 0.76 5.49 84.86 0.47 1.22 16 22 N -0.91 -56.16 13.22 21.65 0.29 -55.88 16 23 Si 1.00 43.77 29.55 68.60 2.03 45.80 16 24 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 27 C 0.04 0.60 5.57 86.44 0.48 1.09 16 28 O -0.22 -4.09 10.78 -3.73 -0.04 -4.13 16 29 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.08 0.38 8.14 -2.38 -0.02 0.36 16 31 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.20 2.29 8.06 -2.91 -0.02 2.27 16 33 H 0.09 0.76 7.52 -2.38 -0.02 0.75 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.05 0.93 8.02 -2.39 -0.02 0.91 16 37 H 0.07 1.68 7.57 -2.39 -0.02 1.66 16 38 H 0.07 1.85 8.06 -2.39 -0.02 1.83 16 39 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.42 7.65 8.35 -92.71 -0.77 6.87 16 41 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 42 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 43 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 44 H 0.08 0.93 7.57 -2.39 -0.02 0.91 16 45 H 0.11 1.34 7.65 -2.39 -0.02 1.32 16 Total: -1.00 -80.88 388.81 -1.85 -82.73 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.23 Total: 18.92 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 6.77 Total: -5.46 kcal Atomic # 7 Polarization: -92.87 SS G_CDS: -9.63 Total: -102.50 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.09 Total: -29.93 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal Total: -80.88 -1.85 -82.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265270531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.096 kcal (2) G-P(sol) polarization free energy of solvation -80.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds