Wall clock time and date at job start Tue Mar 31 2020 22:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34321 * 126.44831 * 2 1 4 4 N 1.34473 * 107.67395 * 179.72437 * 3 2 1 5 5 C 1.30262 * 108.69779 * 0.42505 * 4 3 2 6 6 C 1.50704 * 125.62049 * 179.83681 * 5 4 3 7 7 H 1.08997 * 109.47108 * 194.69224 * 6 5 4 8 8 C 1.53002 * 109.46665 * 74.68981 * 6 5 4 9 9 N 1.46903 * 109.46826 * 314.69302 * 6 5 4 10 10 C 1.48551 * 111.00202 * 300.12244 * 9 6 5 11 11 C 1.54374 * 104.59541 * 200.95973 * 10 9 6 12 12 C 1.54259 * 105.06107 * 23.85769 * 11 10 9 13 13 H 1.09002 * 110.32223 * 241.10101 * 12 11 10 14 14 N 1.46501 * 110.32785 * 118.99402 * 12 11 10 15 15 C 1.34773 * 119.99745 * 87.82421 * 14 12 11 16 16 O 1.21279 * 120.00424 * 0.02562 * 15 14 12 17 17 C 1.50706 * 119.99609 * 180.02562 * 15 14 12 18 18 S 1.81008 * 109.46875 * 180.02562 * 17 15 14 19 19 C 1.76196 * 99.99687 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00371 * 0.02562 * 19 18 17 21 21 C 1.38800 * 119.99944 * 180.02562 * 19 18 17 22 22 N 1.31635 * 119.99779 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47128 * 59.99258 * 23 21 19 25 25 H 1.48500 * 109.47399 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47005 * 299.99734 * 23 21 19 27 27 C 1.48561 * 110.99547 * 184.70301 * 9 6 5 28 28 O 1.33961 * 108.75810 * 359.57497 * 5 4 3 29 29 H 1.08993 * 109.46795 * 270.02776 * 1 2 3 30 30 H 1.08994 * 109.46579 * 30.02460 * 1 2 3 31 31 H 1.09002 * 109.47086 * 150.02533 * 1 2 3 32 32 H 1.08009 * 126.16615 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.46632 * 179.97438 * 8 6 5 34 34 H 1.08997 * 109.47556 * 299.99968 * 8 6 5 35 35 H 1.09004 * 109.47224 * 60.00653 * 8 6 5 36 36 H 1.09004 * 110.40983 * 82.18271 * 10 9 6 37 37 H 1.09000 * 110.41267 * 319.74422 * 10 9 6 38 38 H 1.08992 * 110.32801 * 264.95820 * 11 10 9 39 39 H 1.09007 * 110.40966 * 142.79151 * 11 10 9 40 40 H 0.96998 * 120.00273 * 267.83116 * 14 12 11 41 41 H 1.08997 * 109.47348 * 300.00526 * 17 15 14 42 42 H 1.09003 * 109.46994 * 60.00596 * 17 15 14 43 43 H 0.97001 * 119.99750 * 180.02562 * 22 21 19 44 44 H 1.09005 * 110.41198 * 40.26544 * 27 9 6 45 45 H 1.08998 * 110.41368 * 277.82066 * 27 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3051 1.0805 0.0000 4 7 3.5782 0.6477 0.0062 5 6 3.5765 -0.6549 0.0007 6 6 4.8004 -1.5343 0.0012 7 1 4.5164 -2.5524 -0.2646 8 6 5.4320 -1.5282 1.3948 9 7 5.7698 -1.0247 -0.9780 10 6 5.1893 -1.0130 -2.3453 11 6 6.4123 -0.9927 -3.2870 12 6 7.5656 -1.5962 -2.4593 13 1 8.3692 -0.8689 -2.3431 14 7 8.0703 -2.8126 -3.1010 15 6 9.0401 -2.7300 -4.0332 16 8 9.4954 -1.6487 -4.3406 17 6 9.5589 -3.9813 -4.6938 18 16 10.8459 -3.5435 -5.8889 19 6 11.2602 -5.1460 -6.4930 20 1 10.7504 -6.0167 -6.1080 21 6 12.2418 -5.2892 -7.4638 22 7 12.8628 -4.2278 -7.9335 23 14 12.6806 -6.9880 -8.1050 24 1 11.4792 -7.6126 -8.7146 25 1 13.7499 -6.8698 -9.1286 26 1 13.1612 -7.8320 -6.9817 27 6 6.9424 -1.9304 -1.0870 28 8 2.3075 -1.0841 0.0004 29 1 -0.3632 0.0005 1.0276 30 1 -0.3632 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5134 32 1 1.9823 2.1112 -0.0004 33 1 6.3170 -2.1646 1.3953 34 1 5.7161 -0.5101 1.6606 35 1 4.7128 -1.9063 2.1214 36 1 4.5812 -0.1204 -2.4925 37 1 4.5947 -1.9110 -2.5136 38 1 6.6498 0.0308 -3.5772 39 1 6.2217 -1.6015 -4.1709 40 1 7.7065 -3.6775 -2.8551 41 1 9.9768 -4.6452 -3.9370 42 1 8.7413 -4.4862 -5.2084 43 1 13.5486 -4.3279 -8.6122 44 1 6.6222 -2.9720 -1.0584 45 1 7.6544 -1.7285 -0.2867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265270532.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:08 Heat of formation + Delta-G solvation = -32.831628 kcal Electronic energy + Delta-G solvation = -26246.506418 eV Core-core repulsion = 22390.925817 eV Total energy + Delta-G solvation = -3855.580601 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.35703 -41.13683 -39.72423 -36.33034 -35.61450 -34.57417 -34.15867 -32.82614 -31.17194 -29.87941 -28.92752 -27.67356 -27.46303 -24.76094 -23.42444 -22.66351 -22.16112 -21.51446 -21.11296 -19.82992 -18.37907 -17.96878 -17.81413 -17.53090 -17.03521 -16.86677 -16.30659 -16.15222 -15.73268 -15.40950 -15.21997 -14.95150 -14.69589 -14.39829 -14.35928 -14.02378 -13.89976 -13.76984 -13.47489 -13.24274 -13.15891 -13.08954 -12.93913 -12.84084 -12.72549 -12.59918 -12.40743 -12.31564 -12.22329 -11.83736 -11.73031 -11.43272 -11.11855 -10.94807 -10.26048 -10.14541 -9.65650 -9.61608 -8.65377 -8.33378 -6.11448 0.40759 1.26984 1.44548 1.45646 1.51478 1.58343 1.62352 1.70115 2.22189 2.29223 2.85046 3.00661 3.04898 3.33234 3.41108 3.67920 3.81251 3.96165 3.99135 4.02744 4.06792 4.12357 4.19805 4.29004 4.33133 4.41463 4.50979 4.52875 4.58814 4.66432 4.73933 4.77541 4.83635 4.89136 4.96095 5.04112 5.06871 5.17488 5.22492 5.31276 5.39960 5.42713 5.71696 5.78238 6.20647 6.50886 6.78995 7.07785 7.26315 8.75488 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030271 B = 0.001760 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.742241 B =15907.787097 C =15964.837167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.048 4.048 3 C -0.068 4.068 4 N -0.482 5.482 5 C 0.178 3.822 6 C 0.173 3.827 7 H 0.088 0.912 8 C -0.136 4.136 9 N -0.501 5.501 10 C 0.046 3.954 11 C -0.130 4.130 12 C 0.144 3.856 13 H 0.078 0.922 14 N -0.705 5.705 15 C 0.537 3.463 16 O -0.563 6.563 17 C -0.129 4.129 18 S -0.153 6.153 19 C -0.547 4.547 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.262 1.262 25 H -0.280 1.280 26 H -0.261 1.261 27 C 0.041 3.959 28 O -0.215 6.215 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.201 0.799 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.417 0.583 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.271 0.729 44 H 0.083 0.917 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.980 2.574 21.323 34.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.101 4.101 3 C -0.206 4.206 4 N -0.211 5.211 5 C -0.029 4.029 6 C 0.064 3.936 7 H 0.106 0.894 8 C -0.194 4.194 9 N -0.227 5.227 10 C -0.082 4.082 11 C -0.170 4.170 12 C 0.038 3.962 13 H 0.096 0.904 14 N -0.359 5.359 15 C 0.322 3.678 16 O -0.441 6.441 17 C -0.280 4.280 18 S 0.074 5.926 19 C -0.695 4.695 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.187 1.187 25 H -0.205 1.205 26 H -0.186 1.186 27 C -0.086 4.086 28 O -0.102 6.102 29 H 0.117 0.883 30 H 0.130 0.870 31 H 0.102 0.898 32 H 0.218 0.782 33 H 0.111 0.889 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.255 0.745 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -25.443 5.297 20.926 33.366 hybrid contribution -0.994 -2.995 -0.611 3.215 sum -26.437 2.301 20.315 33.420 Atomic orbital electron populations 1.20492 0.81019 1.05652 1.05104 1.24261 0.96528 0.83902 1.05412 1.23603 0.87534 1.01744 1.07769 1.70449 1.23751 1.09850 1.17006 1.26211 0.84260 0.90442 1.02035 1.20166 0.83994 0.93195 0.96288 0.89442 1.21841 1.01826 1.03714 0.92039 1.65381 1.06052 1.46656 1.04609 1.22979 0.96211 1.01091 0.87948 1.22663 0.94381 1.01738 0.98190 1.21568 0.95986 0.86756 0.91861 0.90401 1.45801 1.38813 1.10719 1.40610 1.20066 0.78877 0.89672 0.79141 1.90707 1.59179 1.30941 1.63259 1.23376 1.03016 0.99174 1.02457 1.85618 1.45293 1.14009 1.47655 1.23180 1.25868 0.93027 1.27395 0.89814 1.26130 0.94843 1.02569 0.95636 1.70184 1.24523 1.31588 1.28485 0.85010 0.78189 0.76739 0.78095 1.18686 1.20499 1.18591 1.23362 0.92884 0.96307 0.96075 1.84374 1.17976 1.37575 1.70283 0.88267 0.86971 0.89812 0.78220 0.88879 0.92113 0.90777 0.91478 0.92509 0.91766 0.90917 0.74544 0.86964 0.87194 0.92034 0.89944 0.87339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.43 71.24 0.74 0.38 16 2 C -0.05 -0.72 7.39 24.79 0.18 -0.53 16 3 C -0.07 -1.20 11.80 83.39 0.98 -0.21 16 4 N -0.48 -11.02 11.28 -303.83 -3.43 -14.45 16 5 C 0.18 3.51 6.13 88.34 0.54 4.05 16 6 C 0.17 2.61 2.39 44.17 0.11 2.72 16 7 H 0.09 1.00 7.97 -2.39 -0.02 0.98 16 8 C -0.14 -1.62 9.14 71.98 0.66 -0.97 16 9 N -0.50 -8.94 5.18 -860.72 -4.46 -13.40 16 10 C 0.05 0.88 5.71 86.45 0.49 1.38 16 11 C -0.13 -3.00 6.79 31.49 0.21 -2.79 16 12 C 0.14 3.23 3.38 45.89 0.16 3.38 16 13 H 0.08 2.21 7.60 -2.39 -0.02 2.19 16 14 N -0.70 -16.56 5.03 -438.29 -2.21 -18.76 16 15 C 0.54 19.16 7.85 87.66 0.69 19.85 16 16 O -0.56 -25.89 15.54 -3.03 -0.05 -25.94 16 17 C -0.13 -4.95 6.16 71.24 0.44 -4.51 16 18 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 19 C -0.55 -31.00 9.50 67.95 0.65 -30.35 16 20 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 21 C 0.01 0.74 5.49 84.86 0.47 1.20 16 22 N -0.91 -56.03 13.22 21.65 0.29 -55.74 16 23 Si 1.00 43.32 29.55 68.60 2.03 45.35 16 24 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 25 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 26 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 27 C 0.04 0.61 5.25 86.45 0.45 1.06 16 28 O -0.21 -4.03 10.77 -3.70 -0.04 -4.07 16 29 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.20 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.09 0.76 7.07 -2.39 -0.02 0.74 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.07 1.53 7.98 -2.39 -0.02 1.51 16 37 H 0.06 0.95 7.97 -2.39 -0.02 0.93 16 38 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.07 1.74 7.95 -2.38 -0.02 1.73 16 40 H 0.42 6.56 8.37 -92.71 -0.78 5.78 16 41 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 42 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 43 H 0.27 15.50 8.31 -92.71 -0.77 14.72 16 44 H 0.08 0.79 7.51 -2.38 -0.02 0.77 16 45 H 0.11 1.43 7.70 -2.39 -0.02 1.41 16 Total: -1.00 -82.02 389.29 -2.03 -84.05 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.23 Total: 17.90 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 6.77 Total: -5.34 kcal Atomic # 7 Polarization: -92.54 SS G_CDS: -9.80 Total: -102.35 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.09 Total: -30.01 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -82.02 -2.03 -84.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265270532.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.223 kcal (2) G-P(sol) polarization free energy of solvation -82.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds