Wall clock time and date at job start Tue Mar 31 2020 22:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33816 * 124.51947 * 2 1 4 4 C 1.37477 * 115.09687 * 179.97438 * 3 2 1 5 5 C 1.50703 * 123.34954 * 179.97438 * 4 3 2 6 6 C 1.36644 * 113.29926 * 0.23424 * 4 3 2 7 7 C 1.46582 * 125.45827 * 179.74425 * 6 4 3 8 8 O 1.21697 * 120.00245 * 359.97438 * 7 6 4 9 9 N 1.34776 * 119.99781 * 179.97438 * 7 6 4 10 10 C 1.46504 * 119.99812 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46877 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.47284 * 294.99509 * 11 10 9 13 13 C 1.52999 * 109.47181 * 175.00109 * 11 10 9 14 14 N 1.46895 * 109.47395 * 54.99960 * 11 10 9 15 15 C 1.46910 * 111.00224 * 205.00029 * 14 11 10 16 16 C 1.50695 * 109.47050 * 179.97438 * 15 14 11 17 17 O 1.21289 * 120.00522 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99682 * 179.97438 * 16 15 14 19 19 C 1.37104 * 120.00126 * 179.97438 * 18 16 15 20 20 H 1.08001 * 119.99701 * 0.02562 * 19 18 16 21 21 C 1.38950 * 120.00023 * 179.97438 * 19 18 16 22 22 N 1.31410 * 119.99703 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 120.00212 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47202 * 89.99818 * 23 21 19 25 25 H 1.48493 * 109.47101 * 209.99827 * 23 21 19 26 26 H 1.48499 * 109.47025 * 329.99686 * 23 21 19 27 27 S 1.70619 * 124.52295 * 179.97438 * 2 1 3 28 28 H 1.08991 * 109.46963 * 89.99869 * 1 2 3 29 29 H 1.09002 * 109.47072 * 210.00061 * 1 2 3 30 30 H 1.09003 * 109.47059 * 330.00028 * 1 2 3 31 31 H 1.07996 * 122.45496 * 0.02562 * 3 2 1 32 32 H 1.09002 * 109.47152 * 90.02652 * 5 4 3 33 33 H 1.09001 * 109.46980 * 330.02752 * 5 4 3 34 34 H 1.09004 * 109.47113 * 210.02733 * 5 4 3 35 35 H 0.97005 * 119.99996 * 359.97438 * 9 7 6 36 36 H 1.08998 * 109.46786 * 299.99577 * 10 9 7 37 37 H 1.08993 * 109.47373 * 60.00045 * 10 9 7 38 38 H 1.09002 * 109.46927 * 299.99554 * 13 11 10 39 39 H 1.08997 * 109.47281 * 59.99485 * 13 11 10 40 40 H 1.09003 * 109.47519 * 180.02562 * 13 11 10 41 41 H 1.00898 * 111.00197 * 81.04394 * 14 11 10 42 42 H 1.09001 * 109.46643 * 299.99990 * 15 14 11 43 43 H 1.08999 * 109.47118 * 59.99604 * 15 14 11 44 44 H 0.96997 * 120.00595 * 359.97438 * 18 16 15 45 45 H 0.96998 * 120.00170 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2654 1.1026 0.0000 4 6 3.6216 0.8775 0.0006 5 6 4.6450 1.9837 0.0001 6 6 3.9493 -0.4491 -0.0041 7 6 5.3124 -0.9882 -0.0101 8 8 6.2659 -0.2320 -0.0116 9 7 5.5097 -2.3215 -0.0138 10 6 6.8720 -2.8603 -0.0203 11 6 6.8156 -4.3893 -0.0229 12 1 6.3720 -4.7381 0.9098 13 6 8.2323 -4.9517 -0.1553 14 7 5.9991 -4.8473 -1.1548 15 6 5.4290 -6.1751 -0.8896 16 6 4.5993 -6.6104 -2.0699 17 8 4.4929 -5.8858 -3.0367 18 7 3.9756 -7.8049 -2.0512 19 6 3.2203 -8.2008 -3.1248 20 1 3.1255 -7.5555 -3.9856 21 6 2.5776 -9.4326 -3.1057 22 7 1.8533 -9.8118 -4.1345 23 14 2.7421 -10.5490 -1.6170 24 1 1.6568 -10.2469 -0.6495 25 1 2.6409 -11.9664 -2.0477 26 1 4.0594 -10.3209 -0.9705 27 16 2.4740 -1.4057 0.0006 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.8430 2.0965 0.0004 32 1 4.8918 2.2508 1.0277 33 1 4.2384 2.8546 -0.5140 34 1 5.5450 1.6459 -0.5137 35 1 4.7496 -2.9242 -0.0122 36 1 7.3953 -2.5142 -0.9116 37 1 7.4023 -2.5182 0.8683 38 1 8.6758 -4.6030 -1.0880 39 1 8.8381 -4.6118 0.6846 40 1 8.1921 -6.0410 -0.1576 41 1 6.5345 -4.8480 -2.0100 42 1 6.2351 -6.8908 -0.7279 43 1 4.7998 -6.1294 -0.0007 44 1 4.0609 -8.3846 -1.2782 45 1 1.4044 -10.6715 -4.1211 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265779766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:22 Heat of formation + Delta-G solvation = -46.226650 kcal Electronic energy + Delta-G solvation = -26500.032687 eV Core-core repulsion = 22643.871235 eV Total energy + Delta-G solvation = -3856.161453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.91239 -38.71738 -38.13556 -36.93994 -34.21900 -33.81570 -32.83182 -31.72841 -30.95939 -28.70558 -27.89971 -26.60632 -25.72207 -23.76806 -22.19542 -21.42779 -21.10349 -19.47520 -19.03360 -18.37707 -17.74808 -16.45387 -16.06233 -15.91371 -15.49889 -15.27820 -14.90480 -14.82187 -14.65701 -14.14944 -13.95355 -13.67991 -13.31978 -13.27622 -13.15124 -13.12236 -12.99690 -12.68939 -12.56140 -12.42325 -12.17030 -12.00151 -11.82998 -11.79248 -11.73312 -11.57520 -11.20127 -11.09050 -10.87910 -10.63154 -10.00956 -9.87527 -9.60837 -9.11485 -8.68534 -8.66213 -8.49279 -8.26284 -8.20522 -6.34334 -3.85960 0.42124 1.38298 1.80012 2.25053 2.98818 3.03424 3.12061 3.13713 3.23703 3.69505 3.98838 4.07161 4.52299 4.66880 4.73801 4.84242 4.93530 4.98717 5.08678 5.10369 5.18786 5.24290 5.25718 5.40929 5.43930 5.50976 5.55983 5.62330 5.63362 5.64863 5.74557 5.83733 5.86490 5.88665 5.91743 5.97163 6.25526 6.33957 6.48175 6.98100 7.46662 7.53234 7.54717 8.11056 8.19942 8.56011 8.91687 9.38871 9.78727 10.78787 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010956 B = 0.002890 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.179181 B = 9684.697778 C =11646.779641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.195 4.195 3 C -0.159 4.159 4 C -0.020 4.020 5 C -0.104 4.104 6 C -0.279 4.279 7 C 0.591 3.409 8 O -0.539 6.539 9 N -0.709 5.709 10 C 0.136 3.864 11 C 0.067 3.933 12 H 0.084 0.916 13 C -0.180 4.180 14 N -0.665 5.665 15 C 0.046 3.954 16 C 0.449 3.551 17 O -0.563 6.563 18 N -0.590 5.590 19 C -0.305 4.305 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.270 1.270 27 S 0.215 5.785 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.141 0.859 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.407 0.593 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.356 0.644 42 H 0.047 0.953 43 H 0.087 0.913 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.098 16.487 14.600 22.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.315 4.315 3 C -0.190 4.190 4 C -0.035 4.035 5 C -0.162 4.162 6 C -0.399 4.399 7 C 0.378 3.622 8 O -0.419 6.419 9 N -0.360 5.360 10 C 0.011 3.989 11 C -0.044 4.044 12 H 0.103 0.897 13 C -0.240 4.240 14 N -0.298 5.298 15 C -0.087 4.087 16 C 0.234 3.766 17 O -0.444 6.444 18 N -0.230 5.230 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 S 0.484 5.516 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.159 0.841 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.242 0.758 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.176 0.824 42 H 0.065 0.935 43 H 0.105 0.895 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.673 16.061 14.024 21.636 hybrid contribution 0.574 -0.497 0.940 1.208 sum 4.247 15.564 14.964 22.005 Atomic orbital electron populations 1.20409 0.87397 1.03399 1.03295 1.24243 1.01629 0.98138 1.07468 1.19800 0.92144 0.99490 1.07529 1.19432 0.94662 0.93372 0.96061 1.20714 0.98056 0.94652 1.02775 1.24361 0.97139 0.97538 1.20878 1.16887 0.86703 0.82260 0.76328 1.90742 1.41961 1.57882 1.51322 1.45676 1.09810 1.06011 1.74534 1.21348 0.83187 0.92163 1.02162 1.21870 0.92817 0.94027 0.95667 0.89745 1.22429 0.97067 1.01658 1.02829 1.60167 1.38790 1.25952 1.04850 1.21765 0.98071 0.90175 0.98642 1.19689 0.84764 0.82980 0.89156 1.90582 1.64825 1.53556 1.35484 1.42208 1.45888 1.16690 1.18176 1.19429 1.23949 1.03021 0.96983 0.86279 1.25041 0.96716 0.97075 0.97312 1.69619 1.31202 1.21852 1.29404 0.86672 0.78556 0.81306 0.82834 1.19590 1.20205 1.19556 1.83341 0.93862 1.06678 1.67723 0.90205 0.90956 0.90412 0.84095 0.90942 0.91877 0.88867 0.75751 0.91234 0.91121 0.91835 0.91745 0.91946 0.82384 0.93521 0.89512 0.79726 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.66 10.31 36.01 0.37 -0.29 16 2 C -0.19 -2.02 6.28 -35.86 -0.23 -2.24 16 3 C -0.16 -1.66 9.82 -41.41 -0.41 -2.07 16 4 C -0.02 -0.24 5.90 -105.47 -0.62 -0.87 16 5 C -0.10 -1.12 9.56 36.01 0.34 -0.78 16 6 C -0.28 -3.70 6.45 -36.79 -0.24 -3.93 16 7 C 0.59 8.53 7.78 -12.90 -0.10 8.43 16 8 O -0.54 -8.80 14.24 5.19 0.07 -8.73 16 9 N -0.71 -9.12 5.38 -61.65 -0.33 -9.45 16 10 C 0.14 1.53 5.37 -4.04 -0.02 1.51 16 11 C 0.07 0.69 2.75 -67.72 -0.19 0.51 16 12 H 0.08 0.79 7.80 -51.93 -0.40 0.39 16 13 C -0.18 -1.58 9.16 37.16 0.34 -1.24 16 14 N -0.66 -9.18 5.31 -107.99 -0.57 -9.75 16 15 C 0.05 0.69 5.97 -4.97 -0.03 0.66 16 16 C 0.45 9.66 7.82 -10.99 -0.09 9.57 16 17 O -0.56 -14.55 15.78 5.55 0.09 -14.47 16 18 N -0.59 -13.53 5.09 -10.96 -0.06 -13.58 16 19 C -0.31 -8.44 10.16 -14.93 -0.15 -8.59 16 20 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.39 13.96 55.50 0.77 -24.62 16 23 Si 0.88 18.91 27.74 -169.99 -4.71 14.20 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.27 -5.25 6.52 56.52 0.37 -4.88 16 27 S 0.21 2.50 22.10 -107.50 -2.38 0.12 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 1.20 6.00 -51.93 -0.31 0.89 16 35 H 0.41 5.18 7.25 -40.82 -0.30 4.89 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.56 7.45 -51.93 -0.39 0.17 16 41 H 0.36 5.32 8.17 -39.29 -0.32 5.00 16 42 H 0.05 0.61 7.44 -51.93 -0.39 0.23 16 43 H 0.09 1.13 8.06 -51.93 -0.42 0.71 16 44 H 0.37 7.41 5.76 -40.82 -0.24 7.18 16 45 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 388.10 15.07 5.85 5.85 Total: -1.00 -33.43 388.10 -8.92 -42.35 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: -6.54 Total: 16.39 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -1.11 Total: 1.69 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.19 Total: -57.41 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: 0.16 Total: -23.19 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -4.71 Total: 14.20 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.38 Total: 0.12 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.43 -8.92 -42.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265779766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.877 kcal (2) G-P(sol) polarization free energy of solvation -33.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds