Wall clock time and date at job start Tue Mar 31 2020 22:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34469 * 126.16538 * 2 1 4 4 C 1.30260 * 108.70295 * 179.97438 * 3 2 1 5 5 O 1.33968 * 108.75490 * 359.73613 * 4 3 2 6 6 C 1.34334 * 126.16483 * 180.02562 * 2 1 3 7 7 C 1.50701 * 126.44537 * 0.02562 * 6 2 1 8 8 N 1.46901 * 109.46993 * 89.99826 * 7 6 2 9 9 C 1.46909 * 110.99448 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.46503 * 179.97438 * 9 8 7 11 11 H 1.08999 * 110.88634 * 51.12125 * 10 9 8 12 12 C 1.55164 * 111.00079 * 174.99827 * 10 9 8 13 13 C 1.54320 * 102.93794 * 153.58063 * 12 10 9 14 14 N 1.47021 * 107.27584 * 337.80562 * 13 12 10 15 15 C 1.34774 * 125.65194 * 178.90682 * 14 13 12 16 16 O 1.21281 * 120.00138 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.99741 * 0.02857 * 15 14 13 18 18 S 1.81005 * 109.47173 * 179.97438 * 17 15 14 19 19 C 1.76189 * 100.00097 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00127 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00013 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00034 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00277 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00228 * 23 21 19 26 26 H 1.48490 * 109.46901 * 150.00205 * 23 21 19 27 27 C 1.47429 * 108.69859 * 359.17188 * 14 13 12 28 28 H 1.09000 * 109.47224 * 269.99837 * 1 2 3 29 29 H 1.08997 * 109.47441 * 30.00188 * 1 2 3 30 30 H 1.09004 * 109.46918 * 149.99992 * 1 2 3 31 31 H 1.07999 * 125.62086 * 180.02562 * 4 3 2 32 32 H 1.09008 * 109.46891 * 330.00194 * 7 6 2 33 33 H 1.09000 * 109.47123 * 210.00162 * 7 6 2 34 34 H 1.00901 * 111.00006 * 56.05227 * 8 7 6 35 35 H 1.09000 * 109.46835 * 60.00266 * 9 8 7 36 36 H 1.08994 * 109.46882 * 299.99703 * 9 8 7 37 37 H 1.08992 * 110.72025 * 35.21630 * 12 10 9 38 38 H 1.08998 * 110.71706 * 271.94087 * 12 10 9 39 39 H 1.09008 * 109.87599 * 218.38788 * 13 12 10 40 40 H 1.08998 * 110.01474 * 97.29860 * 13 12 10 41 41 H 1.09005 * 109.47318 * 59.99759 * 17 15 14 42 42 H 1.09002 * 109.47150 * 299.99724 * 17 15 14 43 43 H 0.97001 * 119.99662 * 179.97438 * 22 21 19 44 44 H 1.08999 * 110.36406 * 142.73701 * 27 14 13 45 45 H 1.08998 * 110.36519 * 265.06088 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0856 0.0000 4 6 3.5431 0.6947 0.0006 5 8 3.5733 -0.6446 0.0068 6 6 2.2997 -1.0845 -0.0005 7 6 1.8493 -2.5226 -0.0017 8 7 1.7034 -2.9889 -1.3871 9 6 1.2639 -4.3901 -1.4273 10 6 1.1230 -4.8386 -2.8833 11 1 2.0256 -4.6094 -3.4496 12 6 0.7814 -6.3498 -2.9690 13 6 0.0335 -6.4591 -4.3145 14 7 -0.4891 -5.1224 -4.6334 15 6 -1.1853 -4.7946 -5.7399 16 8 -1.5684 -3.6551 -5.8999 17 6 -1.4877 -5.8441 -6.7783 18 16 -2.4296 -5.0991 -8.1325 19 6 -2.6383 -6.5071 -9.1709 20 1 -2.2280 -7.4614 -8.8756 21 6 -3.3302 -6.3898 -10.3685 22 7 -3.4856 -7.4416 -11.1446 23 14 -4.0405 -4.7392 -10.8790 24 1 -5.4239 -4.6121 -10.3542 25 1 -3.1996 -3.6465 -10.3276 26 1 -4.0629 -4.6470 -12.3609 27 6 -0.1198 -4.1986 -3.5454 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 4.4065 1.3434 0.0011 32 1 0.8911 -2.6037 0.5118 33 1 2.5898 -3.1357 0.5120 34 1 2.5615 -2.8638 -1.9029 35 1 0.3017 -4.4837 -0.9239 36 1 2.0001 -5.0164 -0.9235 37 1 0.1349 -6.6465 -2.1432 38 1 1.6908 -6.9505 -2.9834 39 1 -0.7902 -7.1674 -4.2241 40 1 0.7187 -6.7856 -5.0967 41 1 -2.0734 -6.6445 -6.3261 42 1 -0.5539 -6.2515 -7.1658 43 1 -3.9694 -7.3596 -11.9813 44 1 0.1281 -3.2170 -3.9491 45 1 -0.9325 -4.1187 -2.8235 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265958482.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:19 Heat of formation + Delta-G solvation = -12.079590 kcal Electronic energy + Delta-G solvation = -25947.300569 eV Core-core repulsion = 22092.619844 eV Total energy + Delta-G solvation = -3854.680725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.70876 -39.95321 -37.90932 -36.40324 -35.49768 -33.01359 -32.42539 -31.53336 -29.71530 -29.38702 -27.98129 -25.98017 -25.57330 -24.36367 -22.84768 -22.46322 -21.30494 -20.64491 -19.37023 -17.73518 -17.55094 -17.12167 -16.67784 -16.54803 -16.31050 -15.49985 -15.28110 -15.01550 -14.88682 -14.54449 -14.22136 -13.87102 -13.70639 -13.56058 -13.37978 -13.20353 -13.02316 -12.83201 -12.66466 -12.51649 -12.36055 -12.16677 -11.86805 -11.49380 -11.35779 -11.24546 -11.23961 -11.00758 -10.97273 -10.86493 -10.58132 -9.84204 -9.48583 -9.18768 -8.98938 -8.92989 -8.53106 -8.47751 -6.90388 -6.27759 -3.99265 1.02257 2.28772 2.34844 2.72730 2.99034 3.23533 3.34867 3.52585 3.59701 3.64376 3.80361 4.19876 4.28029 4.32885 4.35192 4.47726 4.48571 4.67488 4.74285 4.85279 4.94418 4.99639 5.05382 5.11340 5.21391 5.25746 5.29694 5.31686 5.33074 5.44081 5.49976 5.57039 5.60000 5.69043 5.72254 5.84874 5.91265 5.95420 6.02222 6.03622 6.32144 6.40349 6.73568 7.34649 7.62655 7.95306 8.42530 8.48377 9.18538 10.81375 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018375 B = 0.001954 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.477982 B =14322.924391 C =15400.685618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.012 3.988 3 N -0.487 5.487 4 C 0.173 3.827 5 O -0.207 6.207 6 C -0.055 4.055 7 C 0.150 3.850 8 N -0.685 5.685 9 C 0.072 3.928 10 C -0.101 4.101 11 H 0.085 0.915 12 C -0.124 4.124 13 C 0.100 3.900 14 N -0.627 5.627 15 C 0.546 3.454 16 O -0.517 6.517 17 C -0.117 4.117 18 S -0.143 6.143 19 C -0.520 4.520 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.881 5.881 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.235 1.235 26 H -0.274 1.274 27 C 0.124 3.876 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.249 0.751 32 H 0.106 0.894 33 H 0.050 0.950 34 H 0.347 0.653 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.270 0.730 44 H 0.081 0.919 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.453 6.840 27.865 32.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.108 4.108 3 N -0.217 5.217 4 C -0.053 4.053 5 O -0.093 6.093 6 C -0.108 4.108 7 C 0.021 3.979 8 N -0.317 5.317 9 C -0.057 4.057 10 C -0.120 4.120 11 H 0.104 0.896 12 C -0.163 4.163 13 C -0.023 4.023 14 N -0.365 5.365 15 C 0.334 3.666 16 O -0.392 6.392 17 C -0.268 4.268 18 S 0.084 5.916 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.159 1.159 26 H -0.200 1.200 27 C 0.001 3.999 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.265 0.735 32 H 0.124 0.876 33 H 0.068 0.932 34 H 0.166 0.834 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.956 9.305 27.307 32.047 hybrid contribution 1.342 -1.874 -0.028 2.305 sum 15.298 7.431 27.279 32.146 Atomic orbital electron populations 1.20186 0.86230 1.04222 1.02651 1.21563 0.98146 0.87287 1.03796 1.70396 1.01449 1.31913 1.17916 1.28027 0.97644 0.79198 1.00465 1.84405 1.30249 1.24805 1.69841 1.22967 0.80708 0.97693 1.09394 1.20221 1.01006 0.85545 0.91119 1.60483 1.38558 1.20738 1.11910 1.21933 1.00930 0.86979 0.95857 1.22331 0.99146 0.95060 0.95470 0.89638 1.22656 1.00747 0.95709 0.97152 1.22000 0.98183 0.85323 0.96800 1.48501 1.56328 1.10674 1.20975 1.19961 0.76706 0.89349 0.80540 1.90710 1.50900 1.21148 1.76403 1.23257 1.04668 1.00379 0.98490 1.84798 1.70517 1.18039 1.18284 1.22309 1.41837 0.95544 1.07115 0.89417 1.24717 0.94527 0.97098 0.94998 1.69941 1.40318 1.29225 1.12229 0.86731 0.81351 0.85008 0.78756 1.19196 1.15889 1.19956 1.22046 0.95118 0.94168 0.88581 0.90918 0.90486 0.89781 0.73487 0.87572 0.93216 0.83438 0.90012 0.94210 0.90274 0.89924 0.91117 0.91204 0.88657 0.88638 0.91962 0.90086 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.05 36.01 0.36 -0.22 16 2 C 0.01 0.12 7.11 -82.82 -0.59 -0.47 16 3 N -0.49 -5.02 11.29 -11.18 -0.13 -5.14 16 4 C 0.17 1.26 13.23 52.10 0.69 1.95 16 5 O -0.21 -1.71 10.77 5.38 0.06 -1.65 16 6 C -0.05 -0.45 6.90 -35.69 -0.25 -0.70 16 7 C 0.15 0.86 5.84 -4.97 -0.03 0.83 16 8 N -0.68 -4.38 6.43 -115.05 -0.74 -5.12 16 9 C 0.07 0.38 5.14 -3.82 -0.02 0.36 16 10 C -0.10 -0.73 3.18 -88.59 -0.28 -1.01 16 11 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 12 C -0.12 -0.81 6.42 -24.89 -0.16 -0.97 16 13 C 0.10 1.00 6.49 -3.07 -0.02 0.98 16 14 N -0.63 -8.70 3.33 -170.66 -0.57 -9.27 16 15 C 0.55 10.30 7.87 -10.99 -0.09 10.21 16 16 O -0.52 -11.74 16.12 5.56 0.09 -11.65 16 17 C -0.12 -2.36 5.35 36.01 0.19 -2.16 16 18 S -0.14 -3.69 18.55 -107.50 -1.99 -5.69 16 19 C -0.52 -15.13 10.04 30.94 0.31 -14.81 16 20 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 21 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 22 N -0.88 -26.67 13.97 55.49 0.78 -25.90 16 23 Si 0.86 22.00 27.74 -169.99 -4.72 17.29 16 24 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.23 -6.04 6.74 56.52 0.38 -5.66 16 26 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 27 C 0.12 1.40 6.32 -2.65 -0.02 1.38 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.60 7.79 -51.93 -0.40 0.20 16 31 H 0.25 0.57 8.06 -52.49 -0.42 0.15 16 32 H 0.11 0.49 7.79 -51.92 -0.40 0.09 16 33 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.35 2.28 8.72 -39.29 -0.34 1.93 16 35 H 0.08 0.42 7.96 -51.93 -0.41 0.01 16 36 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 37 H 0.08 0.44 8.04 -51.93 -0.42 0.02 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 1.79 8.14 -51.91 -0.42 1.36 16 42 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 43 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.08 1.09 8.04 -51.93 -0.42 0.67 16 45 H 0.07 0.72 7.90 -51.93 -0.41 0.31 16 LS Contribution 390.66 15.07 5.89 5.89 Total: -1.00 -37.06 390.66 -8.36 -45.42 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -7.04 Total: -2.26 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 0.01 Total: -1.91 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: -0.66 Total: -45.43 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.15 Total: -13.31 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.72 Total: 17.29 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.99 Total: -5.69 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.06 -8.36 -45.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265958482.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.338 kcal (2) G-P(sol) polarization free energy of solvation -37.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds