Wall clock time and date at job start Tue Mar 31 2020 22:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34469 * 126.16538 * 2 1 4 4 C 1.30260 * 108.70295 * 179.97438 * 3 2 1 5 5 O 1.33968 * 108.75490 * 359.73613 * 4 3 2 6 6 C 1.34334 * 126.16483 * 180.02562 * 2 1 3 7 7 C 1.50701 * 126.44537 * 0.02562 * 6 2 1 8 8 N 1.46901 * 109.46993 * 89.99826 * 7 6 2 9 9 C 1.46909 * 110.99448 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.46503 * 179.97438 * 9 8 7 11 11 H 1.08999 * 110.88634 * 51.12125 * 10 9 8 12 12 C 1.55164 * 111.00079 * 174.99827 * 10 9 8 13 13 C 1.54320 * 102.93794 * 153.58063 * 12 10 9 14 14 N 1.47021 * 107.27584 * 337.80562 * 13 12 10 15 15 C 1.34774 * 125.65194 * 178.90682 * 14 13 12 16 16 O 1.21281 * 120.00138 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.99741 * 0.02857 * 15 14 13 18 18 S 1.81005 * 109.47173 * 179.97438 * 17 15 14 19 19 C 1.76189 * 100.00097 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00127 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00013 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00034 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00277 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00228 * 23 21 19 26 26 H 1.48490 * 109.46901 * 150.00205 * 23 21 19 27 27 C 1.47429 * 108.69859 * 359.17188 * 14 13 12 28 28 H 1.09000 * 109.47224 * 269.99837 * 1 2 3 29 29 H 1.08997 * 109.47441 * 30.00188 * 1 2 3 30 30 H 1.09004 * 109.46918 * 149.99992 * 1 2 3 31 31 H 1.07999 * 125.62086 * 180.02562 * 4 3 2 32 32 H 1.09008 * 109.46891 * 330.00194 * 7 6 2 33 33 H 1.09000 * 109.47123 * 210.00162 * 7 6 2 34 34 H 1.00901 * 111.00006 * 56.05227 * 8 7 6 35 35 H 1.09000 * 109.46835 * 60.00266 * 9 8 7 36 36 H 1.08994 * 109.46882 * 299.99703 * 9 8 7 37 37 H 1.08992 * 110.72025 * 35.21630 * 12 10 9 38 38 H 1.08998 * 110.71706 * 271.94087 * 12 10 9 39 39 H 1.09008 * 109.87599 * 218.38788 * 13 12 10 40 40 H 1.08998 * 110.01474 * 97.29860 * 13 12 10 41 41 H 1.09005 * 109.47318 * 59.99759 * 17 15 14 42 42 H 1.09002 * 109.47150 * 299.99724 * 17 15 14 43 43 H 0.97001 * 119.99662 * 179.97438 * 22 21 19 44 44 H 1.08999 * 110.36406 * 142.73701 * 27 14 13 45 45 H 1.08998 * 110.36519 * 265.06088 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0856 0.0000 4 6 3.5431 0.6947 0.0006 5 8 3.5733 -0.6446 0.0068 6 6 2.2997 -1.0845 -0.0005 7 6 1.8493 -2.5226 -0.0017 8 7 1.7034 -2.9889 -1.3871 9 6 1.2639 -4.3901 -1.4273 10 6 1.1230 -4.8386 -2.8833 11 1 2.0256 -4.6094 -3.4496 12 6 0.7814 -6.3498 -2.9690 13 6 0.0335 -6.4591 -4.3145 14 7 -0.4891 -5.1224 -4.6334 15 6 -1.1853 -4.7946 -5.7399 16 8 -1.5684 -3.6551 -5.8999 17 6 -1.4877 -5.8441 -6.7783 18 16 -2.4296 -5.0991 -8.1325 19 6 -2.6383 -6.5071 -9.1709 20 1 -2.2280 -7.4614 -8.8756 21 6 -3.3302 -6.3898 -10.3685 22 7 -3.4856 -7.4416 -11.1446 23 14 -4.0405 -4.7392 -10.8790 24 1 -5.4239 -4.6121 -10.3542 25 1 -3.1996 -3.6465 -10.3276 26 1 -4.0629 -4.6470 -12.3609 27 6 -0.1198 -4.1986 -3.5454 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 4.4065 1.3434 0.0011 32 1 0.8911 -2.6037 0.5118 33 1 2.5898 -3.1357 0.5120 34 1 2.5615 -2.8638 -1.9029 35 1 0.3017 -4.4837 -0.9239 36 1 2.0001 -5.0164 -0.9235 37 1 0.1349 -6.6465 -2.1432 38 1 1.6908 -6.9505 -2.9834 39 1 -0.7902 -7.1674 -4.2241 40 1 0.7187 -6.7856 -5.0967 41 1 -2.0734 -6.6445 -6.3261 42 1 -0.5539 -6.2515 -7.1658 43 1 -3.9694 -7.3596 -11.9813 44 1 0.1281 -3.2170 -3.9491 45 1 -0.9325 -4.1187 -2.8235 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265958482.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:18 Heat of formation + Delta-G solvation = -41.230349 kcal Electronic energy + Delta-G solvation = -25948.564641 eV Core-core repulsion = 22092.619844 eV Total energy + Delta-G solvation = -3855.944797 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.29125 -41.08102 -38.93165 -37.10654 -36.11399 -34.68461 -33.83835 -32.34225 -30.89128 -30.24379 -28.71603 -27.87306 -26.59836 -25.10542 -23.58111 -23.04482 -21.88351 -21.28104 -20.74730 -19.58854 -18.17976 -18.02914 -17.72990 -17.46089 -17.13438 -16.91095 -16.44640 -16.13927 -15.81063 -15.67013 -15.38107 -14.91947 -14.89108 -14.47180 -14.26484 -14.13714 -13.87726 -13.83496 -13.65097 -13.39948 -13.34894 -13.12834 -13.02368 -12.98129 -12.67765 -12.65701 -12.10080 -12.00579 -11.91988 -11.86812 -11.56559 -11.48812 -11.18138 -11.01698 -10.55378 -9.72511 -9.68955 -9.38532 -9.02562 -8.52654 -6.24032 0.46063 0.95591 1.30468 1.45098 1.51599 1.53127 1.68936 1.83701 2.08871 2.24397 2.67351 2.85342 3.13085 3.34354 3.53272 3.64085 3.73796 3.85348 3.93629 3.95845 4.14598 4.21364 4.33144 4.38006 4.42738 4.45445 4.51049 4.69791 4.73215 4.74838 4.78722 4.81425 4.87221 4.94771 5.01872 5.03960 5.12396 5.17024 5.31290 5.43831 5.44782 5.69756 5.91873 6.09894 6.28578 6.38381 6.75860 6.92404 7.06856 8.59561 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018375 B = 0.001954 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.477982 B =14322.924391 C =15400.685618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.017 4.017 3 N -0.530 5.530 4 C 0.181 3.819 5 O -0.213 6.213 6 C -0.057 4.057 7 C 0.155 3.845 8 N -0.699 5.699 9 C 0.079 3.921 10 C -0.087 4.087 11 H 0.084 0.916 12 C -0.110 4.110 13 C 0.086 3.914 14 N -0.618 5.618 15 C 0.544 3.456 16 O -0.567 6.567 17 C -0.101 4.101 18 S -0.178 6.178 19 C -0.528 4.528 20 H 0.063 0.937 21 C 0.046 3.954 22 N -0.915 5.915 23 Si 0.914 3.086 24 H -0.262 1.262 25 H -0.239 1.239 26 H -0.257 1.257 27 C 0.118 3.882 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.290 0.710 32 H 0.117 0.883 33 H 0.065 0.935 34 H 0.345 0.655 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.277 0.723 44 H 0.053 0.947 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.870 6.232 30.031 35.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.136 4.136 3 N -0.260 5.260 4 C -0.045 4.045 5 O -0.100 6.100 6 C -0.110 4.110 7 C 0.026 3.974 8 N -0.332 5.332 9 C -0.050 4.050 10 C -0.107 4.107 11 H 0.102 0.898 12 C -0.148 4.148 13 C -0.036 4.036 14 N -0.353 5.353 15 C 0.331 3.669 16 O -0.446 6.446 17 C -0.252 4.252 18 S 0.049 5.951 19 C -0.675 4.675 20 H 0.081 0.919 21 C -0.159 4.159 22 N -0.552 5.552 23 Si 0.736 3.264 24 H -0.186 1.186 25 H -0.163 1.163 26 H -0.182 1.182 27 C -0.004 4.004 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.305 0.695 32 H 0.135 0.865 33 H 0.083 0.917 34 H 0.163 0.837 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.116 0.884 38 H 0.127 0.873 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.087 0.913 44 H 0.072 0.928 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 15.397 8.652 29.515 34.396 hybrid contribution 1.020 -1.739 -0.573 2.096 sum 16.417 6.913 28.942 33.984 Atomic orbital electron populations 1.20175 0.85695 1.03694 1.03328 1.21897 0.98940 0.87810 1.04993 1.70376 1.02873 1.32924 1.19779 1.28974 0.98064 0.79256 0.98204 1.84420 1.30345 1.25283 1.69923 1.23375 0.80471 0.98554 1.08623 1.20304 1.01938 0.84218 0.90947 1.60464 1.38680 1.21641 1.12374 1.21902 1.02004 0.86688 0.94365 1.22264 0.96700 0.95299 0.96393 0.89783 1.22673 1.01677 0.95119 0.95348 1.22404 0.98923 0.83122 0.99189 1.48507 1.54037 1.13094 1.19640 1.19676 0.77402 0.88166 0.81616 1.90686 1.53481 1.22661 1.77792 1.23200 1.04383 1.00759 0.96830 1.84749 1.72155 1.17747 1.20491 1.22424 1.41504 0.95697 1.07915 0.91875 1.25548 0.94908 1.00361 0.95102 1.70011 1.41236 1.31075 1.12928 0.85878 0.80574 0.80786 0.79210 1.18635 1.16300 1.18167 1.22250 0.97382 0.92957 0.87764 0.89642 0.91791 0.89430 0.69528 0.86476 0.91705 0.83684 0.89318 0.91791 0.88428 0.87324 0.90411 0.90773 0.87193 0.87286 0.91321 0.92802 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.11 10.05 71.24 0.72 -0.39 16 2 C -0.02 -0.32 7.11 41.26 0.29 -0.03 16 3 N -0.53 -10.81 11.29 -304.07 -3.43 -14.24 16 4 C 0.18 2.43 13.23 130.48 1.73 4.16 16 5 O -0.21 -3.24 10.77 -3.66 -0.04 -3.28 16 6 C -0.06 -0.88 6.90 24.79 0.17 -0.71 16 7 C 0.15 1.43 5.84 85.56 0.50 1.93 16 8 N -0.70 -7.43 6.43 -517.91 -3.33 -10.76 16 9 C 0.08 0.56 5.14 86.30 0.44 1.01 16 10 C -0.09 -1.00 3.18 -9.48 -0.03 -1.03 16 11 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 12 C -0.11 -0.96 6.42 31.78 0.20 -0.76 16 13 C 0.09 1.46 6.49 86.73 0.56 2.03 16 14 N -0.62 -16.36 3.33 -812.25 -2.70 -19.06 16 15 C 0.54 20.41 7.87 87.66 0.69 21.09 16 16 O -0.57 -26.25 16.12 -3.03 -0.05 -26.30 16 17 C -0.10 -4.02 5.35 71.24 0.38 -3.64 16 18 S -0.18 -9.29 18.55 -56.49 -1.05 -10.34 16 19 C -0.53 -31.16 10.04 67.96 0.68 -30.47 16 20 H 0.06 3.91 8.03 -2.91 -0.02 3.88 16 21 C 0.05 2.75 5.50 84.86 0.47 3.22 16 22 N -0.91 -55.91 13.97 21.65 0.30 -55.61 16 23 Si 0.91 45.66 27.74 68.60 1.90 47.56 16 24 H -0.26 -12.75 7.11 99.48 0.71 -12.04 16 25 H -0.24 -12.03 6.74 99.48 0.67 -11.36 16 26 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 27 C 0.12 2.53 6.32 86.77 0.55 3.08 16 28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.09 1.23 7.79 -2.38 -0.02 1.21 16 31 H 0.29 0.70 8.06 -2.91 -0.02 0.68 16 32 H 0.12 0.80 7.79 -2.38 -0.02 0.78 16 33 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.35 3.88 8.72 -89.69 -0.78 3.10 16 35 H 0.09 0.56 7.96 -2.39 -0.02 0.54 16 36 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.10 0.58 8.04 -2.39 -0.02 0.56 16 38 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 42 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 43 H 0.28 15.66 8.31 -92.71 -0.77 14.88 16 44 H 0.05 1.46 8.04 -2.39 -0.02 1.44 16 45 H 0.07 1.45 7.90 -2.39 -0.02 1.43 16 Total: -1.00 -83.16 390.66 -0.87 -84.03 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 0.18 Total: 8.52 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 7.36 Total: -0.51 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -9.17 Total: -99.67 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.09 Total: -29.58 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.90 Total: 47.56 kcal Atomic # 16 Polarization: -9.29 SS G_CDS: -1.05 Total: -10.34 kcal Total: -83.16 -0.87 -84.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265958482.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.796 kcal (2) G-P(sol) polarization free energy of solvation -83.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds