Wall clock time and date at job start Tue Mar 31 2020 22:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37477 * 123.34589 * 2 1 4 4 C 1.33821 * 115.09670 * 179.97438 * 3 2 1 5 5 S 1.70620 * 110.95477 * 0.02562 * 4 3 2 6 6 C 1.36643 * 123.35173 * 179.70720 * 2 1 3 7 7 C 1.46581 * 125.46263 * 0.02562 * 6 2 1 8 8 O 1.21704 * 119.99468 * 0.02562 * 7 6 2 9 9 N 1.34769 * 120.00162 * 179.97438 * 7 6 2 10 10 C 1.46509 * 119.99866 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46730 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46676 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.47485 * 54.99930 * 12 11 10 14 14 C 1.53003 * 109.47147 * 175.00340 * 12 11 10 15 15 N 1.46906 * 109.47380 * 294.99772 * 12 11 10 16 16 C 1.46894 * 111.00212 * 154.99955 * 15 12 11 17 17 C 1.50699 * 109.47235 * 180.02562 * 16 15 12 18 18 O 1.21285 * 120.00033 * 359.97438 * 17 16 15 19 19 N 1.34773 * 119.99763 * 180.02562 * 17 16 15 20 20 C 1.37107 * 119.99969 * 179.97438 * 19 17 16 21 21 H 1.08004 * 119.99464 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00041 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99736 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00008 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47409 * 90.00093 * 24 22 20 26 26 H 1.48502 * 109.46973 * 209.99888 * 24 22 20 27 27 H 1.48496 * 109.47452 * 330.00041 * 24 22 20 28 28 H 1.08999 * 109.46995 * 90.02441 * 1 2 3 29 29 H 1.08994 * 109.46790 * 210.02128 * 1 2 3 30 30 H 1.08997 * 109.47305 * 330.02569 * 1 2 3 31 31 H 1.07991 * 122.45344 * 359.94628 * 3 2 1 32 32 H 1.07996 * 124.52080 * 179.97438 * 4 3 2 33 33 H 0.97002 * 120.00342 * 0.02562 * 9 7 6 34 34 H 1.09002 * 109.46540 * 299.99695 * 10 9 7 35 35 H 1.08999 * 109.47185 * 60.00132 * 10 9 7 36 36 H 1.08994 * 109.47368 * 299.99385 * 11 10 9 37 37 H 1.08999 * 109.47319 * 60.00042 * 11 10 9 38 38 H 1.08999 * 109.47264 * 59.99454 * 14 12 11 39 39 H 1.08997 * 109.47029 * 180.02562 * 14 12 11 40 40 H 1.09000 * 109.46763 * 299.99905 * 14 12 11 41 41 H 1.00898 * 111.00443 * 278.95699 * 15 12 11 42 42 H 1.09001 * 109.47165 * 300.00545 * 16 15 12 43 43 H 1.09000 * 109.46918 * 59.99946 * 16 15 12 44 44 H 0.97000 * 120.00501 * 359.97438 * 19 17 16 45 45 H 0.97005 * 119.99705 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2628 1.1484 0.0000 4 6 3.5871 0.9564 0.0005 5 16 3.9624 -0.7080 0.0004 6 6 2.2583 -1.1414 0.0058 7 6 1.7286 -2.5081 0.0123 8 8 0.5259 -2.6945 0.0123 9 7 2.5733 -3.5582 0.0172 10 6 2.0437 -4.9243 0.0231 11 6 3.2044 -5.9211 0.0285 12 6 2.6514 -7.3476 0.0353 13 1 1.9708 -7.4775 -0.8062 14 6 3.8070 -8.3432 -0.0850 15 7 1.9281 -7.5865 1.2914 16 6 0.9192 -8.6411 1.1256 17 6 0.1990 -8.8573 2.4316 18 8 0.4973 -8.1980 3.4049 19 7 -0.7757 -9.7839 2.5183 20 6 -1.4306 -9.9809 3.7067 21 1 -1.1649 -9.3938 4.5734 22 6 -2.4359 -10.9359 3.7959 23 7 -3.0632 -11.1251 4.9351 24 14 -2.8948 -11.9518 2.2970 25 1 -2.0685 -13.1851 2.2630 26 1 -4.3315 -12.3205 2.3699 27 1 -2.6495 -11.1575 1.0666 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 -0.8898 0.5141 30 1 -0.3634 0.8902 0.5134 31 1 1.8201 2.1334 -0.0009 32 1 4.3205 1.7492 0.0002 33 1 3.5318 -3.4097 0.0168 34 1 1.4331 -5.0733 0.9136 35 1 1.4336 -5.0813 -0.8664 36 1 3.8154 -5.7722 -0.8618 37 1 3.8142 -5.7639 0.9182 38 1 4.4876 -8.2132 0.7565 39 1 3.4130 -9.3594 -0.0806 40 1 4.3437 -8.1659 -1.0170 41 1 2.5669 -7.8116 2.0393 42 1 0.2024 -8.3413 0.3611 43 1 1.4079 -9.5670 0.8221 44 1 -1.0141 -10.3115 1.7400 45 1 -3.7653 -11.7915 4.9973 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266121811.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:18 Heat of formation + Delta-G solvation = -43.835023 kcal Electronic energy + Delta-G solvation = -25975.696940 eV Core-core repulsion = 22119.639196 eV Total energy + Delta-G solvation = -3856.057744 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.01263 -38.66994 -38.12948 -37.12118 -34.88421 -33.91879 -31.83150 -31.52417 -31.13785 -29.50560 -27.83780 -26.47731 -24.25600 -23.75121 -23.10536 -21.43048 -20.82402 -19.40307 -19.09835 -18.42233 -18.25915 -16.21504 -16.14299 -15.92715 -15.69923 -15.44474 -15.14591 -14.93488 -14.79014 -14.16421 -13.95169 -13.84138 -13.43783 -13.33343 -13.24471 -13.07573 -12.81788 -12.60205 -12.37688 -12.35867 -12.18532 -12.02236 -11.91222 -11.64926 -11.40620 -11.28250 -11.22735 -11.13522 -10.93567 -10.57100 -9.98397 -9.94493 -9.54183 -9.30189 -9.00182 -8.76805 -8.56602 -8.16492 -8.09799 -6.28075 -3.79315 0.21212 1.15125 1.53356 2.08327 2.99183 3.05383 3.06679 3.08584 3.17147 3.77758 4.08953 4.13618 4.51684 4.60277 4.64546 4.84452 4.90391 4.96538 5.02715 5.09917 5.24686 5.25185 5.29190 5.36527 5.49916 5.53746 5.59194 5.62972 5.68271 5.72611 5.75048 5.87471 5.94708 6.00610 6.05285 6.07275 6.17376 6.28706 6.37409 7.11715 7.31606 7.59076 7.61696 8.06072 8.17904 8.62974 8.98266 9.45721 9.86210 10.85129 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.002052 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.515657 B =13641.340866 C =14766.919108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.021 4.021 3 C -0.147 4.147 4 C -0.227 4.227 5 S 0.188 5.812 6 C -0.271 4.271 7 C 0.588 3.412 8 O -0.520 6.520 9 N -0.727 5.727 10 C 0.123 3.877 11 C -0.116 4.116 12 C 0.085 3.915 13 H 0.080 0.920 14 C -0.183 4.183 15 N -0.663 5.663 16 C 0.048 3.952 17 C 0.450 3.550 18 O -0.564 6.564 19 N -0.591 5.591 20 C -0.304 4.304 21 H 0.119 0.881 22 C 0.040 3.960 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.269 1.269 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.145 0.855 32 H 0.169 0.831 33 H 0.393 0.607 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.352 0.648 42 H 0.087 0.913 43 H 0.045 0.955 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.248 19.208 -16.858 30.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.036 4.036 3 C -0.179 4.179 4 C -0.365 4.365 5 S 0.456 5.544 6 C -0.391 4.391 7 C 0.374 3.626 8 O -0.398 6.398 9 N -0.378 5.378 10 C 0.001 3.999 11 C -0.155 4.155 12 C -0.026 4.026 13 H 0.098 0.902 14 C -0.242 4.242 15 N -0.295 5.295 16 C -0.085 4.085 17 C 0.236 3.764 18 O -0.446 6.446 19 N -0.231 5.231 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.163 4.163 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 H 0.094 0.906 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.163 0.837 32 H 0.186 0.814 33 H 0.227 0.773 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.172 0.828 42 H 0.105 0.895 43 H 0.063 0.937 44 H 0.203 0.797 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 17.348 19.060 -16.153 30.416 hybrid contribution -0.635 -0.644 -1.157 1.469 sum 16.713 18.416 -17.310 30.300 Atomic orbital electron populations 1.20770 0.88517 1.04216 1.03111 1.19583 0.98051 0.90384 0.95598 1.19966 0.92584 0.99767 1.05563 1.25234 1.00674 1.01658 1.08930 1.82907 1.04383 0.98536 1.68605 1.24476 0.97044 0.97566 1.19989 1.16887 0.86258 0.82759 0.76726 1.90821 1.14235 1.85123 1.49608 1.45930 1.09292 1.06735 1.75855 1.21437 0.96547 0.78087 1.03853 1.21760 0.97393 0.94115 1.02221 1.21503 0.94267 0.93364 0.93457 0.90155 1.22515 0.99350 1.00034 1.02295 1.60189 1.17862 1.45762 1.05712 1.21735 0.95464 0.93522 0.97781 1.19723 0.83594 0.83353 0.89745 1.90566 1.67041 1.48555 1.38407 1.42212 1.33858 1.34870 1.12162 1.19433 1.14707 1.19862 0.89244 0.86300 1.25043 0.96576 0.97592 0.97040 1.69626 1.24100 1.34163 1.24312 0.86665 0.79203 0.80941 0.82553 1.19717 1.20182 1.19454 0.90638 0.88576 0.91595 0.83726 0.81397 0.77299 0.88961 0.91724 0.91419 0.90995 0.92196 0.92375 0.92163 0.82824 0.89469 0.93746 0.79724 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 9.56 36.01 0.34 -0.75 16 2 C -0.02 -0.22 5.90 -105.47 -0.62 -0.84 16 3 C -0.15 -1.17 9.97 -41.41 -0.41 -1.58 16 4 C -0.23 -1.54 10.92 29.18 0.32 -1.22 16 5 S 0.19 1.37 22.16 -107.50 -2.38 -1.01 16 6 C -0.27 -2.95 6.45 -36.80 -0.24 -3.18 16 7 C 0.59 7.76 7.78 -12.90 -0.10 7.66 16 8 O -0.52 -8.72 14.24 5.18 0.07 -8.65 16 9 N -0.73 -7.87 5.55 -61.64 -0.34 -8.22 16 10 C 0.12 1.46 5.56 -4.04 -0.02 1.43 16 11 C -0.12 -1.06 5.01 -26.73 -0.13 -1.20 16 12 C 0.09 0.89 2.59 -67.71 -0.18 0.72 16 13 H 0.08 0.82 7.80 -51.93 -0.40 0.41 16 14 C -0.18 -1.62 9.16 37.16 0.34 -1.28 16 15 N -0.66 -9.70 5.33 -107.99 -0.58 -10.27 16 16 C 0.05 0.78 5.96 -4.98 -0.03 0.75 16 17 C 0.45 10.28 7.82 -10.99 -0.09 10.19 16 18 O -0.56 -15.27 15.78 5.55 0.09 -15.18 16 19 N -0.59 -14.26 5.09 -10.96 -0.06 -14.31 16 20 C -0.30 -8.72 10.16 -14.93 -0.15 -8.87 16 21 H 0.12 3.90 7.39 -52.48 -0.39 3.51 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -26.10 13.96 55.50 0.77 -25.33 16 24 Si 0.88 19.62 27.74 -169.99 -4.71 14.91 16 25 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.10 1.24 6.00 -51.93 -0.31 0.92 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.17 0.69 8.06 -52.49 -0.42 0.26 16 33 H 0.39 3.17 7.59 -40.82 -0.31 2.86 16 34 H 0.09 1.42 7.75 -51.93 -0.40 1.02 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 39 H 0.06 0.55 7.45 -51.93 -0.39 0.16 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.35 5.38 8.17 -39.29 -0.32 5.06 16 42 H 0.09 1.30 8.06 -51.93 -0.42 0.88 16 43 H 0.04 0.62 7.44 -51.93 -0.39 0.24 16 44 H 0.37 7.83 5.76 -40.82 -0.24 7.59 16 45 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 387.72 15.07 5.84 5.84 Total: -1.00 -35.24 387.72 -8.89 -44.14 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: -6.54 Total: 15.23 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -1.06 Total: 2.85 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -0.20 Total: -58.13 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: 0.16 Total: -23.83 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.71 Total: 14.91 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.38 Total: -1.01 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.24 -8.89 -44.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266121811.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.300 kcal (2) G-P(sol) polarization free energy of solvation -35.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds