Wall clock time and date at job start Tue Mar 31 2020 22:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37477 * 123.34589 * 2 1 4 4 C 1.33821 * 115.09670 * 179.97438 * 3 2 1 5 5 S 1.70620 * 110.95477 * 0.02562 * 4 3 2 6 6 C 1.36643 * 123.35173 * 179.70720 * 2 1 3 7 7 C 1.46581 * 125.46263 * 0.02562 * 6 2 1 8 8 O 1.21704 * 119.99468 * 0.02562 * 7 6 2 9 9 N 1.34769 * 120.00162 * 179.97438 * 7 6 2 10 10 C 1.46509 * 119.99866 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46730 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46676 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.47485 * 54.99930 * 12 11 10 14 14 C 1.53003 * 109.47147 * 175.00340 * 12 11 10 15 15 N 1.46906 * 109.47380 * 294.99772 * 12 11 10 16 16 C 1.46894 * 111.00212 * 154.99955 * 15 12 11 17 17 C 1.50699 * 109.47235 * 180.02562 * 16 15 12 18 18 O 1.21285 * 120.00033 * 359.97438 * 17 16 15 19 19 N 1.34773 * 119.99763 * 180.02562 * 17 16 15 20 20 C 1.37107 * 119.99969 * 179.97438 * 19 17 16 21 21 H 1.08004 * 119.99464 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00041 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99736 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00008 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47409 * 90.00093 * 24 22 20 26 26 H 1.48502 * 109.46973 * 209.99888 * 24 22 20 27 27 H 1.48496 * 109.47452 * 330.00041 * 24 22 20 28 28 H 1.08999 * 109.46995 * 90.02441 * 1 2 3 29 29 H 1.08994 * 109.46790 * 210.02128 * 1 2 3 30 30 H 1.08997 * 109.47305 * 330.02569 * 1 2 3 31 31 H 1.07991 * 122.45344 * 359.94628 * 3 2 1 32 32 H 1.07996 * 124.52080 * 179.97438 * 4 3 2 33 33 H 0.97002 * 120.00342 * 0.02562 * 9 7 6 34 34 H 1.09002 * 109.46540 * 299.99695 * 10 9 7 35 35 H 1.08999 * 109.47185 * 60.00132 * 10 9 7 36 36 H 1.08994 * 109.47368 * 299.99385 * 11 10 9 37 37 H 1.08999 * 109.47319 * 60.00042 * 11 10 9 38 38 H 1.08999 * 109.47264 * 59.99454 * 14 12 11 39 39 H 1.08997 * 109.47029 * 180.02562 * 14 12 11 40 40 H 1.09000 * 109.46763 * 299.99905 * 14 12 11 41 41 H 1.00898 * 111.00443 * 278.95699 * 15 12 11 42 42 H 1.09001 * 109.47165 * 300.00545 * 16 15 12 43 43 H 1.09000 * 109.46918 * 59.99946 * 16 15 12 44 44 H 0.97000 * 120.00501 * 359.97438 * 19 17 16 45 45 H 0.97005 * 119.99705 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2628 1.1484 0.0000 4 6 3.5871 0.9564 0.0005 5 16 3.9624 -0.7080 0.0004 6 6 2.2583 -1.1414 0.0058 7 6 1.7286 -2.5081 0.0123 8 8 0.5259 -2.6945 0.0123 9 7 2.5733 -3.5582 0.0172 10 6 2.0437 -4.9243 0.0231 11 6 3.2044 -5.9211 0.0285 12 6 2.6514 -7.3476 0.0353 13 1 1.9708 -7.4775 -0.8062 14 6 3.8070 -8.3432 -0.0850 15 7 1.9281 -7.5865 1.2914 16 6 0.9192 -8.6411 1.1256 17 6 0.1990 -8.8573 2.4316 18 8 0.4973 -8.1980 3.4049 19 7 -0.7757 -9.7839 2.5183 20 6 -1.4306 -9.9809 3.7067 21 1 -1.1649 -9.3938 4.5734 22 6 -2.4359 -10.9359 3.7959 23 7 -3.0632 -11.1251 4.9351 24 14 -2.8948 -11.9518 2.2970 25 1 -2.0685 -13.1851 2.2630 26 1 -4.3315 -12.3205 2.3699 27 1 -2.6495 -11.1575 1.0666 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 -0.8898 0.5141 30 1 -0.3634 0.8902 0.5134 31 1 1.8201 2.1334 -0.0009 32 1 4.3205 1.7492 0.0002 33 1 3.5318 -3.4097 0.0168 34 1 1.4331 -5.0733 0.9136 35 1 1.4336 -5.0813 -0.8664 36 1 3.8154 -5.7722 -0.8618 37 1 3.8142 -5.7639 0.9182 38 1 4.4876 -8.2132 0.7565 39 1 3.4130 -9.3594 -0.0806 40 1 4.3437 -8.1659 -1.0170 41 1 2.5669 -7.8116 2.0393 42 1 0.2024 -8.3413 0.3611 43 1 1.4079 -9.5670 0.8221 44 1 -1.0141 -10.3115 1.7400 45 1 -3.7653 -11.7915 4.9973 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266121811.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:17 Heat of formation + Delta-G solvation = -71.857153 kcal Electronic energy + Delta-G solvation = -25976.912070 eV Core-core repulsion = 22119.639196 eV Total energy + Delta-G solvation = -3857.272875 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.94781 -40.35403 -38.93617 -38.22280 -36.11878 -35.78047 -33.77249 -32.78155 -31.86633 -30.39211 -28.60597 -28.07826 -25.63338 -24.79916 -23.95052 -22.35420 -21.68868 -21.28973 -20.32830 -19.88914 -19.09313 -17.72734 -17.09156 -16.88643 -16.79349 -16.78736 -16.45642 -16.06686 -15.81426 -15.57989 -14.99678 -14.88283 -14.71198 -14.49798 -14.41798 -14.18028 -14.02113 -13.88783 -13.58604 -13.30875 -13.13264 -13.07323 -12.86519 -12.72269 -12.66449 -12.42763 -12.24248 -12.17418 -11.98229 -11.87060 -11.73031 -11.51635 -11.00314 -10.43940 -10.25677 -10.24867 -9.73768 -9.37210 -9.24081 -8.42068 -6.02948 -0.49190 0.51041 0.92482 1.29492 1.34565 1.39589 1.43815 1.95803 2.09882 2.16097 2.22345 2.74612 3.14424 3.44782 3.79643 3.85711 3.97569 4.12096 4.13551 4.24584 4.28974 4.39049 4.43003 4.48029 4.56406 4.59747 4.65198 4.74375 4.75320 4.91846 4.99320 5.02004 5.07564 5.18786 5.21404 5.33403 5.36959 5.42128 5.52681 5.53059 5.91449 6.11205 6.43845 6.46486 6.59434 6.87538 7.13624 7.39273 7.96396 8.75750 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.002052 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.515657 B =13641.340866 C =14766.919108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.032 4.032 3 C -0.161 4.161 4 C -0.214 4.214 5 S 0.237 5.763 6 C -0.314 4.314 7 C 0.579 3.421 8 O -0.570 6.570 9 N -0.715 5.715 10 C 0.128 3.872 11 C -0.106 4.106 12 C 0.085 3.915 13 H 0.089 0.911 14 C -0.176 4.176 15 N -0.684 5.684 16 C 0.063 3.937 17 C 0.447 3.553 18 O -0.615 6.615 19 N -0.592 5.592 20 C -0.329 4.329 21 H 0.053 0.947 22 C -0.018 4.018 23 N -0.935 5.935 24 Si 0.967 3.033 25 H -0.254 1.254 26 H -0.275 1.275 27 H -0.233 1.233 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.166 0.834 32 H 0.203 0.797 33 H 0.409 0.591 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.083 0.917 41 H 0.345 0.655 42 H 0.108 0.892 43 H 0.080 0.920 44 H 0.390 0.610 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.857 19.461 -20.714 34.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.048 4.048 3 C -0.192 4.192 4 C -0.351 4.351 5 S 0.505 5.495 6 C -0.434 4.434 7 C 0.367 3.633 8 O -0.452 6.452 9 N -0.367 5.367 10 C 0.005 3.995 11 C -0.144 4.144 12 C -0.025 4.025 13 H 0.107 0.893 14 C -0.235 4.235 15 N -0.316 5.316 16 C -0.069 4.069 17 C 0.235 3.765 18 O -0.499 6.499 19 N -0.234 5.234 20 C -0.458 4.458 21 H 0.072 0.928 22 C -0.216 4.216 23 N -0.576 5.576 24 Si 0.786 3.214 25 H -0.178 1.178 26 H -0.200 1.200 27 H -0.156 1.156 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.184 0.816 32 H 0.220 0.780 33 H 0.245 0.755 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.120 0.880 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.164 0.836 42 H 0.126 0.874 43 H 0.097 0.903 44 H 0.225 0.775 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 20.024 19.320 -20.040 34.290 hybrid contribution -1.340 -0.562 0.152 1.461 sum 18.684 18.757 -19.888 33.113 Atomic orbital electron populations 1.20702 0.89340 1.03475 1.02978 1.19832 0.98058 0.91397 0.95489 1.20108 0.92960 0.99795 1.06329 1.25729 1.00942 1.02277 1.06181 1.82660 1.00854 0.98642 1.67295 1.24430 0.99874 0.96410 1.22651 1.17363 0.85885 0.84154 0.75863 1.90788 1.16319 1.86078 1.52022 1.45817 1.09923 1.06031 1.74897 1.21284 0.97410 0.79344 1.01450 1.21728 0.96341 0.92394 1.03914 1.21627 0.94876 0.94469 0.91489 0.89302 1.22434 0.98552 0.98994 1.03497 1.60187 1.18380 1.45374 1.07677 1.21634 0.95934 0.95835 0.93497 1.21083 0.82470 0.81336 0.91598 1.90542 1.68213 1.50023 1.41149 1.42047 1.34180 1.35896 1.11271 1.19004 1.16735 1.20505 0.89553 0.92845 1.26152 0.95485 0.98493 1.01463 1.69812 1.24872 1.35258 1.27611 0.85342 0.78765 0.79122 0.78149 1.17843 1.20038 1.15610 0.90527 0.91923 0.89585 0.81618 0.78043 0.75514 0.93280 0.92316 0.87992 0.90857 0.92316 0.92714 0.89800 0.83584 0.87393 0.90267 0.77487 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.29 9.56 71.24 0.68 -1.61 16 2 C -0.03 -0.65 5.90 -20.42 -0.12 -0.77 16 3 C -0.16 -2.23 9.97 21.09 0.21 -2.02 16 4 C -0.21 -2.19 10.92 66.82 0.73 -1.46 16 5 S 0.24 2.92 22.16 -56.49 -1.25 1.67 16 6 C -0.31 -6.82 6.45 24.07 0.16 -6.67 16 7 C 0.58 16.03 7.78 86.42 0.67 16.70 16 8 O -0.57 -20.75 14.24 -4.36 -0.06 -20.81 16 9 N -0.72 -15.53 5.55 -467.16 -2.59 -18.12 16 10 C 0.13 3.05 5.56 86.38 0.48 3.53 16 11 C -0.11 -1.71 5.01 30.59 0.15 -1.56 16 12 C 0.09 1.58 2.59 44.92 0.12 1.69 16 13 H 0.09 1.53 7.80 -2.39 -0.02 1.51 16 14 C -0.18 -2.51 9.16 71.98 0.66 -1.85 16 15 N -0.68 -19.49 5.33 -495.57 -2.64 -22.13 16 16 C 0.06 1.95 5.96 85.56 0.51 2.46 16 17 C 0.45 20.76 7.82 87.66 0.69 21.44 16 18 O -0.61 -35.13 15.78 -3.04 -0.05 -35.18 16 19 N -0.59 -28.75 5.09 -306.99 -1.56 -30.31 16 20 C -0.33 -19.80 10.16 84.04 0.85 -18.95 16 21 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 22 C -0.02 -1.00 5.50 84.93 0.47 -0.53 16 23 N -0.93 -57.60 13.96 21.66 0.30 -57.30 16 24 Si 0.97 39.72 27.74 68.60 1.90 41.62 16 25 H -0.25 -9.76 7.11 99.48 0.71 -9.06 16 26 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 27 H -0.23 -8.13 6.52 99.48 0.65 -7.49 16 28 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.06 1.79 6.00 -2.39 -0.01 1.78 16 30 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.17 1.49 8.06 -2.92 -0.02 1.46 16 32 H 0.20 0.68 8.06 -2.91 -0.02 0.66 16 33 H 0.41 6.07 7.59 -92.71 -0.70 5.37 16 34 H 0.05 1.61 7.75 -2.39 -0.02 1.59 16 35 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 39 H 0.05 0.84 7.45 -2.39 -0.02 0.82 16 40 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.34 10.53 8.17 -89.70 -0.73 9.80 16 42 H 0.11 2.93 8.06 -2.39 -0.02 2.91 16 43 H 0.08 1.94 7.44 -2.39 -0.02 1.92 16 44 H 0.39 15.64 5.76 -92.71 -0.53 15.11 16 45 H 0.28 15.68 8.31 -92.70 -0.77 14.91 16 Total: -1.00 -86.68 387.72 -0.69 -87.37 By element: Atomic # 1 Polarization: 43.76 SS G_CDS: -0.99 Total: 42.78 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 6.25 Total: 10.42 kcal Atomic # 7 Polarization: -121.37 SS G_CDS: -6.49 Total: -127.86 kcal Atomic # 8 Polarization: -55.88 SS G_CDS: -0.11 Total: -55.99 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 1.90 Total: 41.62 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -1.25 Total: 1.67 kcal Total: -86.68 -0.69 -87.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266121811.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.515 kcal (2) G-P(sol) polarization free energy of solvation -86.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds