Wall clock time and date at job start Tue Mar 31 2020 22:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34478 * 126.16689 * 2 1 4 4 C 1.30256 * 108.70176 * 180.02562 * 3 2 1 5 5 O 1.33976 * 108.76288 * 0.02562 * 4 3 2 6 6 C 1.34331 * 126.16337 * 179.69638 * 2 1 3 7 7 C 1.50699 * 126.44557 * 359.97438 * 6 2 1 8 8 N 1.46902 * 109.46833 * 90.00412 * 7 6 2 9 9 C 1.46902 * 110.99934 * 176.32538 * 8 7 6 10 10 H 1.09008 * 109.47054 * 33.86024 * 9 8 7 11 11 C 1.52998 * 109.47227 * 153.85968 * 9 8 7 12 12 N 1.46501 * 109.47192 * 305.00110 * 11 9 8 13 13 C 1.34775 * 120.00325 * 180.02562 * 12 11 9 14 14 O 1.21288 * 119.99762 * 359.97438 * 13 12 11 15 15 C 1.50693 * 120.00377 * 179.97438 * 13 12 11 16 16 S 1.81005 * 109.47254 * 179.97438 * 15 13 12 17 17 C 1.76201 * 99.99858 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00393 * 359.97438 * 17 16 15 19 19 C 1.38800 * 119.99980 * 180.02562 * 17 16 15 20 20 N 1.31634 * 119.99697 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00283 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46956 * 89.99569 * 21 19 17 23 23 H 1.48497 * 109.47284 * 209.99630 * 21 19 17 24 24 H 1.48501 * 109.46973 * 329.99508 * 21 19 17 25 25 C 1.52995 * 109.47233 * 273.86302 * 9 8 7 26 26 C 1.53005 * 117.49770 * 243.48393 * 25 9 8 27 27 C 1.53006 * 117.50001 * 174.82749 * 25 9 8 28 28 H 1.09002 * 109.46715 * 90.02441 * 1 2 3 29 29 H 1.08992 * 109.46755 * 210.02287 * 1 2 3 30 30 H 1.09000 * 109.46616 * 330.02218 * 1 2 3 31 31 H 1.08003 * 125.62005 * 180.02562 * 4 3 2 32 32 H 1.08999 * 109.47266 * 209.99864 * 7 6 2 33 33 H 1.08998 * 109.46890 * 330.00293 * 7 6 2 34 34 H 1.00894 * 111.00126 * 52.37544 * 8 7 6 35 35 H 1.08997 * 109.47207 * 65.00118 * 11 9 8 36 36 H 1.09004 * 109.47192 * 185.00418 * 11 9 8 37 37 H 0.97004 * 119.99960 * 359.97438 * 12 11 9 38 38 H 1.09004 * 109.47418 * 299.99929 * 15 13 12 39 39 H 1.09001 * 109.47173 * 59.99932 * 15 13 12 40 40 H 0.97005 * 120.00057 * 180.02562 * 20 19 17 41 41 H 1.09000 * 115.55195 * 29.15621 * 25 9 8 42 42 H 1.08994 * 117.49539 * 0.02562 * 26 25 9 43 43 H 1.08996 * 117.49448 * 145.01911 * 26 25 9 44 44 H 1.08996 * 117.49759 * 214.97823 * 27 25 9 45 45 H 1.09001 * 117.49757 * 359.97067 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0856 0.0000 4 6 3.5431 0.6947 -0.0006 5 8 3.5735 -0.6447 -0.0015 6 6 2.2997 -1.0845 0.0057 7 6 1.8493 -2.5226 0.0139 8 7 1.7025 -2.9975 -1.3684 9 6 1.3483 -4.4228 -1.4006 10 1 0.7173 -4.6598 -0.5438 11 6 0.5899 -4.7309 -2.6932 12 7 -0.5668 -3.8388 -2.8052 13 6 -1.3870 -3.9293 -3.8708 14 8 -1.1672 -4.7490 -4.7373 15 6 -2.5771 -3.0121 -3.9857 16 16 -3.4742 -3.3764 -5.5150 17 6 -4.7748 -2.1937 -5.3959 18 1 -4.8248 -1.5296 -4.5456 19 6 -5.7359 -2.1161 -6.3943 20 7 -5.6754 -2.9258 -7.4304 21 14 -7.1153 -0.8628 -6.2677 22 1 -6.6943 0.4039 -6.9185 23 1 -8.3265 -1.3894 -6.9466 24 1 -7.4215 -0.6066 -4.8374 25 6 2.6232 -5.2666 -1.3438 26 6 2.9403 -6.1497 -2.5524 27 6 2.4617 -6.7849 -1.2445 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3632 -0.8897 0.5142 30 1 -0.3632 0.8902 0.5135 31 1 4.4066 1.3434 -0.0003 32 1 2.5901 -3.1325 0.5308 33 1 0.8915 -2.6004 0.5285 34 1 2.5403 -2.8211 -1.9023 35 1 1.2502 -4.5786 -3.5469 36 1 0.2498 -5.7664 -2.6770 37 1 -0.7428 -3.1834 -2.1120 38 1 -3.2372 -3.1645 -3.1318 39 1 -2.2374 -1.9764 -4.0021 40 1 -6.3469 -2.8714 -8.1283 41 1 3.4633 -4.8143 -0.8167 42 1 2.2408 -6.1291 -3.3880 43 1 3.9890 -6.2786 -2.8201 44 1 3.1958 -7.3314 -0.6524 45 1 1.4471 -7.1825 -1.2191 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266398505.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:13 Heat of formation + Delta-G solvation = -16.276831 kcal Electronic energy + Delta-G solvation = -26490.543177 eV Core-core repulsion = 22635.680446 eV Total energy + Delta-G solvation = -3854.862731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.26826 -40.77885 -39.50398 -36.48079 -36.05736 -35.33225 -34.55974 -32.75703 -31.34355 -29.62349 -28.04499 -27.58094 -25.81254 -24.61309 -23.24395 -23.06907 -21.74501 -21.66610 -20.88805 -19.73667 -18.24163 -17.85335 -17.71791 -17.52296 -16.85881 -16.75767 -16.38401 -16.25616 -16.01362 -15.64064 -15.44626 -15.30540 -14.61295 -14.53804 -14.29718 -14.15785 -14.01006 -13.64674 -13.44074 -13.21314 -13.13752 -12.88629 -12.87548 -12.76285 -12.62578 -12.45452 -12.23945 -11.96878 -11.70566 -11.47967 -11.36735 -11.12277 -10.98450 -10.88692 -10.24087 -9.99629 -9.72708 -9.42940 -8.63439 -8.32505 -6.09934 0.47878 1.30059 1.43807 1.49550 1.60276 1.70239 1.71856 1.85148 2.28956 2.38690 2.75612 3.01574 3.21356 3.35871 3.37455 3.65371 3.75935 3.86767 3.95858 4.06235 4.09969 4.12363 4.21157 4.24713 4.36353 4.46028 4.55428 4.56543 4.69888 4.75565 4.83161 4.86146 4.88545 4.91588 5.02557 5.05311 5.19105 5.21570 5.26393 5.44191 5.47840 5.54153 5.84508 6.21777 6.22218 6.64784 6.78627 7.08897 7.35870 8.76742 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009674 B = 0.002769 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.770045 B =10111.063729 C =12607.796653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.012 4.012 3 N -0.530 5.530 4 C 0.181 3.819 5 O -0.213 6.213 6 C -0.058 4.058 7 C 0.153 3.847 8 N -0.680 5.680 9 C 0.122 3.878 10 H 0.110 0.890 11 C 0.133 3.867 12 N -0.697 5.697 13 C 0.531 3.469 14 O -0.572 6.572 15 C -0.127 4.127 16 S -0.153 6.153 17 C -0.545 4.545 18 H 0.082 0.918 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 0.998 3.002 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.257 1.257 25 C -0.176 4.176 26 C -0.194 4.194 27 C -0.168 4.168 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.288 0.712 32 H 0.066 0.934 33 H 0.122 0.878 34 H 0.349 0.651 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.417 0.583 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.271 0.729 41 H 0.119 0.881 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.106 0.894 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.401 0.839 22.718 31.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.131 4.131 3 N -0.259 5.259 4 C -0.045 4.045 5 O -0.100 6.100 6 C -0.111 4.111 7 C 0.025 3.975 8 N -0.311 5.311 9 C 0.012 3.988 10 H 0.128 0.872 11 C 0.008 3.992 12 N -0.350 5.350 13 C 0.316 3.684 14 O -0.451 6.451 15 C -0.279 4.279 16 S 0.075 5.925 17 C -0.693 4.693 18 H 0.101 0.899 19 C -0.192 4.192 20 N -0.549 5.549 21 Si 0.819 3.181 22 H -0.194 1.194 23 H -0.203 1.203 24 H -0.181 1.181 25 C -0.196 4.196 26 C -0.231 4.231 27 C -0.205 4.205 28 H 0.092 0.908 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.303 0.697 32 H 0.084 0.916 33 H 0.140 0.860 34 H 0.168 0.832 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.254 0.746 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.080 0.920 41 H 0.136 0.864 42 H 0.107 0.893 43 H 0.118 0.882 44 H 0.125 0.875 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 20.895 0.239 21.108 29.702 hybrid contribution 0.166 0.923 0.871 1.280 sum 21.061 1.162 21.979 30.463 Atomic orbital electron populations 1.20196 0.85599 1.03890 1.03253 1.21889 0.98914 0.87715 1.04627 1.70392 1.02843 1.32967 1.19724 1.28945 0.98066 0.79267 0.98221 1.84428 1.30356 1.25236 1.69949 1.23273 0.80491 0.98328 1.08985 1.20408 1.02265 0.84150 0.90693 1.60584 1.42604 1.16045 1.11868 1.21220 0.94410 0.85969 0.97236 0.87245 1.21496 0.86381 0.93133 0.98146 1.45530 1.26730 1.39378 1.23379 1.20034 0.83434 0.83215 0.81693 1.90683 1.74100 1.38749 1.41546 1.23347 0.98317 1.02595 1.03593 1.85557 1.30665 1.50596 1.25725 1.23209 1.12881 1.22090 1.11081 0.89942 1.26123 1.00631 0.98516 0.93911 1.70190 1.36066 1.38307 1.10299 0.84964 0.76485 0.77463 0.79139 1.19433 1.20306 1.18075 1.23008 0.99686 0.93324 1.03589 1.23170 1.02654 1.04787 0.92507 1.23033 1.03221 0.94149 1.00112 0.90819 0.88500 0.91401 0.69678 0.91591 0.85990 0.83245 0.92726 0.91846 0.74563 0.87241 0.87680 0.92046 0.86354 0.89336 0.88213 0.87529 0.88614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.14 10.22 71.24 0.73 -0.41 16 2 C -0.01 -0.23 7.11 41.26 0.29 0.07 16 3 N -0.53 -11.09 11.29 -304.05 -3.43 -14.52 16 4 C 0.18 2.54 13.23 130.48 1.73 4.27 16 5 O -0.21 -3.32 10.78 -3.88 -0.04 -3.36 16 6 C -0.06 -0.90 6.86 24.79 0.17 -0.73 16 7 C 0.15 1.49 5.81 85.56 0.50 1.99 16 8 N -0.68 -8.22 5.71 -495.57 -2.83 -11.05 16 9 C 0.12 1.45 2.51 44.91 0.11 1.57 16 10 H 0.11 1.00 7.83 -2.38 -0.02 0.99 16 11 C 0.13 2.75 3.95 86.38 0.34 3.09 16 12 N -0.70 -17.26 5.39 -463.06 -2.49 -19.75 16 13 C 0.53 19.68 7.85 87.66 0.69 20.37 16 14 O -0.57 -26.67 15.86 -3.05 -0.05 -26.72 16 15 C -0.13 -5.10 6.16 71.23 0.44 -4.66 16 16 S -0.15 -8.57 20.57 -56.49 -1.16 -9.74 16 17 C -0.54 -31.39 9.50 67.95 0.65 -30.75 16 18 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 19 C 0.01 0.73 5.49 84.86 0.47 1.20 16 20 N -0.91 -56.56 13.22 21.65 0.29 -56.27 16 21 Si 1.00 43.98 29.55 68.60 2.03 46.01 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 23 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 24 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 25 C -0.18 -1.87 5.55 -10.79 -0.06 -1.92 16 26 C -0.19 -2.70 9.50 30.62 0.29 -2.41 16 27 C -0.17 -1.87 10.01 30.62 0.31 -1.57 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.10 1.02 7.16 -2.39 -0.02 1.00 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.29 0.94 8.06 -2.91 -0.02 0.92 16 32 H 0.07 0.49 7.75 -2.39 -0.02 0.47 16 33 H 0.12 0.82 7.14 -2.39 -0.02 0.80 16 34 H 0.35 4.76 8.41 -89.70 -0.75 4.01 16 35 H 0.05 1.34 6.88 -2.39 -0.02 1.32 16 36 H 0.06 1.44 7.60 -2.38 -0.02 1.42 16 37 H 0.42 7.97 8.14 -92.71 -0.75 7.21 16 38 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 39 H 0.10 3.87 8.14 -2.39 -0.02 3.86 16 40 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 41 H 0.12 1.02 7.88 -2.39 -0.02 1.00 16 42 H 0.09 1.61 5.80 -2.39 -0.01 1.60 16 43 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.10 1.15 8.00 -2.39 -0.02 1.13 16 Total: -1.00 -82.30 393.05 -1.53 -83.83 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -0.48 Total: 21.49 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 6.64 Total: -9.91 kcal Atomic # 7 Polarization: -93.12 SS G_CDS: -8.47 Total: -101.60 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.09 Total: -30.09 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.74 kcal Total: -82.30 -1.53 -83.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266398505.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.553 kcal (2) G-P(sol) polarization free energy of solvation -82.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds