Wall clock time and date at job start Tue Mar 31 2020 22:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34330 * 126.44369 * 2 1 4 4 N 1.34480 * 107.66552 * 180.02562 * 3 2 1 5 5 C 1.30250 * 108.70352 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.62335 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.47330 * 90.01897 * 6 5 4 8 8 C 1.46904 * 111.00289 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47066 * 180.02562 * 8 7 6 10 10 H 1.08999 * 110.88673 * 51.11730 * 9 8 7 11 11 C 1.55152 * 111.00506 * 175.00188 * 9 8 7 12 12 C 1.54323 * 102.94507 * 153.57338 * 11 9 8 13 13 N 1.47019 * 107.27046 * 337.80871 * 12 11 9 14 14 C 1.34775 * 125.64724 * 178.90656 * 13 12 11 15 15 O 1.21284 * 120.00295 * 180.02562 * 14 13 12 16 16 C 1.50708 * 119.99957 * 0.02562 * 14 13 12 17 17 S 1.80998 * 109.47052 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00013 * 180.02562 * 17 16 14 19 19 H 1.07991 * 119.99794 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99771 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00311 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99653 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48508 * 109.47016 * 299.99635 * 22 20 18 25 25 H 1.48495 * 109.47483 * 59.99992 * 22 20 18 26 26 C 1.47419 * 108.70475 * 359.16380 * 13 12 11 27 27 O 1.33973 * 108.76232 * 0.22070 * 5 4 3 28 28 H 1.09004 * 109.47048 * 90.00037 * 1 2 3 29 29 H 1.08994 * 109.47538 * 210.00691 * 1 2 3 30 30 H 1.09001 * 109.46984 * 330.00835 * 1 2 3 31 31 H 1.08000 * 126.16767 * 0.05311 * 3 2 1 32 32 H 1.09003 * 109.47130 * 330.02142 * 6 5 4 33 33 H 1.09000 * 109.47480 * 210.02064 * 6 5 4 34 34 H 1.00900 * 111.00195 * 56.04791 * 7 6 5 35 35 H 1.08998 * 109.46994 * 60.00211 * 8 7 6 36 36 H 1.08996 * 109.46782 * 299.99832 * 8 7 6 37 37 H 1.09001 * 110.71860 * 35.21044 * 11 9 8 38 38 H 1.08999 * 110.71932 * 271.93917 * 11 9 8 39 39 H 1.08999 * 109.88038 * 218.38538 * 12 11 9 40 40 H 1.09008 * 110.00757 * 97.29760 * 12 11 9 41 41 H 1.09005 * 109.46512 * 60.00633 * 16 14 13 42 42 H 1.08991 * 109.47135 * 300.00153 * 16 14 13 43 43 H 0.97001 * 119.99662 * 359.97438 * 21 20 18 44 44 H 1.08999 * 110.36921 * 142.73978 * 26 13 12 45 45 H 1.08996 * 110.36854 * 265.06399 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 -0.0006 5 6 3.5765 -0.6548 -0.0015 6 6 4.8003 -1.5341 -0.0029 7 7 5.1987 -1.8212 1.3816 8 6 6.3916 -2.6776 1.4194 9 6 6.7747 -2.9546 2.8746 10 1 5.9156 -3.3145 3.4408 11 6 7.9554 -3.9577 2.9576 12 6 8.6201 -3.5986 4.3033 13 7 8.2352 -2.2167 4.6252 14 6 8.5957 -1.5387 5.7328 15 8 8.2177 -0.3978 5.8954 16 6 9.4687 -2.1981 6.7693 17 16 9.7740 -1.0400 8.1263 18 6 10.7888 -2.0419 9.1612 19 1 11.0349 -3.0502 8.8629 20 6 11.2718 -1.5351 10.3596 21 7 10.9714 -0.3062 10.7234 22 14 12.3483 -2.5970 11.4564 23 1 12.7299 -1.8289 12.6687 24 1 11.5976 -3.8138 11.8580 25 1 13.5725 -2.9928 10.7149 26 6 7.3844 -1.6976 3.5389 27 8 2.3074 -1.0840 -0.0064 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8898 0.5139 30 1 -0.3633 0.8901 0.5137 31 1 1.9822 2.1113 0.0008 32 1 5.6145 -1.0229 -0.5166 33 1 4.5759 -2.4684 -0.5175 34 1 4.4381 -2.2372 1.8979 35 1 7.2166 -2.1739 0.9157 36 1 6.1785 -3.6198 0.9146 37 1 8.6500 -3.8049 2.1315 38 1 7.5892 -4.9842 2.9701 39 1 9.7039 -3.6700 4.2121 40 1 8.2687 -4.2729 5.0844 41 1 10.4174 -2.4852 6.3157 42 1 8.9672 -3.0855 7.1553 43 1 10.4127 0.2454 10.1536 44 1 6.5969 -1.0624 3.9443 45 1 7.9857 -1.1441 2.8177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267031280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:50 Heat of formation + Delta-G solvation = -15.774892 kcal Electronic energy + Delta-G solvation = -25614.013710 eV Core-core repulsion = 21759.172745 eV Total energy + Delta-G solvation = -3854.840965 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.69235 -39.91763 -37.87474 -36.35621 -35.06167 -33.23455 -32.50139 -32.11145 -29.77698 -29.56713 -27.93733 -25.71808 -24.84058 -24.23248 -22.78862 -22.66383 -21.43606 -20.67755 -19.31641 -18.19935 -17.45532 -17.21922 -16.76401 -16.49902 -16.31280 -15.30525 -15.12992 -14.99797 -14.72851 -14.24294 -14.10204 -13.83667 -13.79790 -13.72789 -13.52732 -13.28904 -12.94320 -12.86893 -12.72215 -12.55411 -12.35374 -12.15576 -11.83274 -11.78859 -11.68159 -11.40519 -11.19324 -10.96716 -10.89981 -10.83422 -10.15786 -9.54694 -9.44679 -9.16718 -8.99043 -8.94750 -8.49084 -8.18805 -6.64175 -6.59686 -3.97228 1.00054 2.17922 2.31571 2.86717 3.03736 3.34959 3.39393 3.47589 3.53226 3.60063 3.76250 4.25118 4.28449 4.30117 4.37199 4.47650 4.55543 4.61480 4.79779 4.87914 4.90578 4.94404 5.03192 5.06209 5.07777 5.15864 5.24895 5.30864 5.35275 5.45299 5.45950 5.51663 5.58751 5.63614 5.71358 5.88132 5.91962 5.95785 5.98962 6.05314 6.31327 6.44374 6.73205 7.39159 7.66844 7.94006 8.52459 8.53695 9.29879 10.84260 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020988 B = 0.001738 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.796077 B =16102.650731 C =17002.723824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.047 4.047 3 C -0.043 4.043 4 N -0.459 5.459 5 C 0.186 3.814 6 C 0.161 3.839 7 N -0.683 5.683 8 C 0.074 3.926 9 C -0.100 4.100 10 H 0.085 0.915 11 C -0.124 4.124 12 C 0.101 3.899 13 N -0.628 5.628 14 C 0.546 3.454 15 O -0.515 6.515 16 C -0.124 4.124 17 S -0.117 6.117 18 C -0.607 4.607 19 H 0.065 0.935 20 C 0.035 3.965 21 N -0.884 5.884 22 Si 1.084 2.916 23 H -0.278 1.278 24 H -0.285 1.285 25 H -0.285 1.285 26 C 0.123 3.877 27 O -0.205 6.205 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.184 0.816 32 H 0.116 0.884 33 H 0.060 0.940 34 H 0.347 0.653 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.278 0.722 44 H 0.081 0.919 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.776 -8.661 -27.149 33.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.101 4.101 3 C -0.181 4.181 4 N -0.188 5.188 5 C -0.021 4.021 6 C 0.032 3.968 7 N -0.316 5.316 8 C -0.055 4.055 9 C -0.120 4.120 10 H 0.104 0.896 11 C -0.162 4.162 12 C -0.022 4.022 13 N -0.365 5.365 14 C 0.334 3.666 15 O -0.390 6.390 16 C -0.275 4.275 17 S 0.110 5.890 18 C -0.755 4.755 19 H 0.083 0.917 20 C -0.176 4.176 21 N -0.518 5.518 22 Si 0.910 3.090 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.211 1.211 26 C 0.000 4.000 27 O -0.092 6.092 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.201 0.799 32 H 0.134 0.866 33 H 0.078 0.922 34 H 0.166 0.834 35 H 0.102 0.898 36 H 0.060 0.940 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.579 -6.001 -25.333 30.865 hybrid contribution -1.359 -2.705 -1.879 3.563 sum -17.938 -8.706 -27.212 33.735 Atomic orbital electron populations 1.20287 0.83895 1.04568 1.03772 1.23506 0.95065 0.84568 1.06936 1.23158 0.87777 1.00495 1.06713 1.70449 1.22923 1.09167 1.16257 1.26016 0.83839 0.90473 1.01778 1.20193 0.89302 0.95653 0.91685 1.60367 1.08754 1.50881 1.11585 1.21933 0.92838 0.94773 0.95983 1.22328 0.98220 0.96013 0.95427 0.89618 1.22654 0.97011 0.99398 0.97155 1.21981 0.99925 0.83591 0.96732 1.48509 1.52377 1.14650 1.21002 1.19970 0.80246 0.85863 0.80516 1.90717 1.54490 1.17446 1.76300 1.23290 1.01086 1.03969 0.99144 1.84836 1.66757 1.20229 1.17222 1.23696 1.38945 1.02913 1.09982 0.91657 1.26056 0.97727 0.97780 0.95988 1.70795 1.33902 1.07624 1.39469 0.83328 0.75382 0.74511 0.75743 1.20273 1.21169 1.21145 1.22058 0.93902 0.95398 0.88634 1.84369 1.17977 1.36809 1.70050 0.89799 0.90297 0.88801 0.79903 0.86600 0.92168 0.83436 0.89808 0.94041 0.90230 0.89917 0.91241 0.91337 0.89112 0.89146 0.90966 0.90067 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.27 10.43 36.01 0.38 0.11 16 2 C -0.05 -0.38 7.39 -35.69 -0.26 -0.65 16 3 C -0.04 -0.40 11.80 -17.77 -0.21 -0.61 16 4 N -0.46 -5.36 11.29 -11.10 -0.13 -5.49 16 5 C 0.19 1.82 7.85 -12.95 -0.10 1.72 16 6 C 0.16 1.10 6.31 -4.98 -0.03 1.06 16 7 N -0.68 -5.13 6.43 -115.06 -0.74 -5.87 16 8 C 0.07 0.45 5.14 -3.82 -0.02 0.43 16 9 C -0.10 -0.80 3.18 -88.59 -0.28 -1.08 16 10 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 11 C -0.12 -0.87 6.42 -24.90 -0.16 -1.03 16 12 C 0.10 1.08 6.49 -3.07 -0.02 1.06 16 13 N -0.63 -9.40 3.33 -170.66 -0.57 -9.96 16 14 C 0.55 11.04 7.87 -10.98 -0.09 10.95 16 15 O -0.52 -12.55 16.12 5.55 0.09 -12.46 16 16 C -0.12 -2.64 5.35 36.01 0.19 -2.45 16 17 S -0.12 -3.25 19.60 -107.50 -2.11 -5.36 16 18 C -0.61 -17.84 9.50 30.94 0.29 -17.54 16 19 H 0.07 1.83 7.80 -52.49 -0.41 1.42 16 20 C 0.04 1.03 5.49 -17.43 -0.10 0.94 16 21 N -0.88 -27.93 13.67 55.49 0.76 -27.17 16 22 Si 1.08 25.21 29.92 -169.99 -5.09 20.13 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 26 C 0.12 1.54 6.32 -2.64 -0.02 1.53 16 27 O -0.20 -1.94 10.78 5.34 0.06 -1.88 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.18 1.21 8.06 -52.49 -0.42 0.78 16 32 H 0.12 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.35 2.49 8.72 -39.29 -0.34 2.14 16 35 H 0.08 0.51 7.96 -51.93 -0.41 0.10 16 36 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.08 0.48 8.04 -51.93 -0.42 0.06 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 41 H 0.09 1.81 8.14 -51.91 -0.42 1.38 16 42 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16 43 H 0.28 9.00 7.12 -40.82 -0.29 8.70 16 44 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 45 H 0.07 0.83 7.90 -51.93 -0.41 0.42 16 LS Contribution 393.36 15.07 5.93 5.93 Total: -1.00 -38.83 393.36 -9.21 -48.04 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -6.99 Total: -0.33 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -0.42 Total: -5.57 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: -0.68 Total: -48.49 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.15 Total: -14.34 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.09 Total: 20.13 kcal Atomic # 16 Polarization: -3.25 SS G_CDS: -2.11 Total: -5.36 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -38.83 -9.21 -48.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267031280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.263 kcal (2) G-P(sol) polarization free energy of solvation -38.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds