Wall clock time and date at job start Tue Mar 31 2020 22:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34330 * 126.44369 * 2 1 4 4 N 1.34480 * 107.66552 * 180.02562 * 3 2 1 5 5 C 1.30250 * 108.70352 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.62335 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.47330 * 90.01897 * 6 5 4 8 8 C 1.46904 * 111.00289 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47066 * 180.02562 * 8 7 6 10 10 H 1.08999 * 110.88673 * 51.11730 * 9 8 7 11 11 C 1.55152 * 111.00506 * 175.00188 * 9 8 7 12 12 C 1.54323 * 102.94507 * 153.57338 * 11 9 8 13 13 N 1.47019 * 107.27046 * 337.80871 * 12 11 9 14 14 C 1.34775 * 125.64724 * 178.90656 * 13 12 11 15 15 O 1.21284 * 120.00295 * 180.02562 * 14 13 12 16 16 C 1.50708 * 119.99957 * 0.02562 * 14 13 12 17 17 S 1.80998 * 109.47052 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00013 * 180.02562 * 17 16 14 19 19 H 1.07991 * 119.99794 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99771 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00311 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99653 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48508 * 109.47016 * 299.99635 * 22 20 18 25 25 H 1.48495 * 109.47483 * 59.99992 * 22 20 18 26 26 C 1.47419 * 108.70475 * 359.16380 * 13 12 11 27 27 O 1.33973 * 108.76232 * 0.22070 * 5 4 3 28 28 H 1.09004 * 109.47048 * 90.00037 * 1 2 3 29 29 H 1.08994 * 109.47538 * 210.00691 * 1 2 3 30 30 H 1.09001 * 109.46984 * 330.00835 * 1 2 3 31 31 H 1.08000 * 126.16767 * 0.05311 * 3 2 1 32 32 H 1.09003 * 109.47130 * 330.02142 * 6 5 4 33 33 H 1.09000 * 109.47480 * 210.02064 * 6 5 4 34 34 H 1.00900 * 111.00195 * 56.04791 * 7 6 5 35 35 H 1.08998 * 109.46994 * 60.00211 * 8 7 6 36 36 H 1.08996 * 109.46782 * 299.99832 * 8 7 6 37 37 H 1.09001 * 110.71860 * 35.21044 * 11 9 8 38 38 H 1.08999 * 110.71932 * 271.93917 * 11 9 8 39 39 H 1.08999 * 109.88038 * 218.38538 * 12 11 9 40 40 H 1.09008 * 110.00757 * 97.29760 * 12 11 9 41 41 H 1.09005 * 109.46512 * 60.00633 * 16 14 13 42 42 H 1.08991 * 109.47135 * 300.00153 * 16 14 13 43 43 H 0.97001 * 119.99662 * 359.97438 * 21 20 18 44 44 H 1.08999 * 110.36921 * 142.73978 * 26 13 12 45 45 H 1.08996 * 110.36854 * 265.06399 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 -0.0006 5 6 3.5765 -0.6548 -0.0015 6 6 4.8003 -1.5341 -0.0029 7 7 5.1987 -1.8212 1.3816 8 6 6.3916 -2.6776 1.4194 9 6 6.7747 -2.9546 2.8746 10 1 5.9156 -3.3145 3.4408 11 6 7.9554 -3.9577 2.9576 12 6 8.6201 -3.5986 4.3033 13 7 8.2352 -2.2167 4.6252 14 6 8.5957 -1.5387 5.7328 15 8 8.2177 -0.3978 5.8954 16 6 9.4687 -2.1981 6.7693 17 16 9.7740 -1.0400 8.1263 18 6 10.7888 -2.0419 9.1612 19 1 11.0349 -3.0502 8.8629 20 6 11.2718 -1.5351 10.3596 21 7 10.9714 -0.3062 10.7234 22 14 12.3483 -2.5970 11.4564 23 1 12.7299 -1.8289 12.6687 24 1 11.5976 -3.8138 11.8580 25 1 13.5725 -2.9928 10.7149 26 6 7.3844 -1.6976 3.5389 27 8 2.3074 -1.0840 -0.0064 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8898 0.5139 30 1 -0.3633 0.8901 0.5137 31 1 1.9822 2.1113 0.0008 32 1 5.6145 -1.0229 -0.5166 33 1 4.5759 -2.4684 -0.5175 34 1 4.4381 -2.2372 1.8979 35 1 7.2166 -2.1739 0.9157 36 1 6.1785 -3.6198 0.9146 37 1 8.6500 -3.8049 2.1315 38 1 7.5892 -4.9842 2.9701 39 1 9.7039 -3.6700 4.2121 40 1 8.2687 -4.2729 5.0844 41 1 10.4174 -2.4852 6.3157 42 1 8.9672 -3.0855 7.1553 43 1 10.4127 0.2454 10.1536 44 1 6.5969 -1.0624 3.9443 45 1 7.9857 -1.1441 2.8177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267031280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:49 Heat of formation + Delta-G solvation = -46.510909 kcal Electronic energy + Delta-G solvation = -25615.346524 eV Core-core repulsion = 21759.172745 eV Total energy + Delta-G solvation = -3856.173779 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.34982 -41.14007 -38.99250 -37.14512 -35.76717 -34.75922 -33.96670 -32.96662 -30.99759 -30.51581 -28.73384 -27.14278 -26.35091 -25.09005 -23.59425 -23.29725 -22.07492 -21.39163 -20.87616 -20.08109 -18.24144 -18.05816 -17.85475 -17.55748 -17.10659 -16.73778 -16.31204 -15.84097 -15.66391 -15.57767 -15.45756 -14.92511 -14.62672 -14.54454 -14.40732 -14.28370 -13.98907 -13.85202 -13.84650 -13.56872 -13.42503 -13.27889 -13.15360 -12.73652 -12.70458 -12.42358 -12.11740 -11.96733 -11.95019 -11.60280 -11.56794 -11.54391 -11.10337 -11.08659 -10.34558 -9.75551 -9.74260 -9.45650 -8.93995 -8.90654 -6.29947 0.36940 1.13727 1.45113 1.51300 1.58686 1.60857 1.65651 1.81068 2.01810 2.33666 2.93936 3.01404 3.07990 3.20960 3.52288 3.60016 3.78636 3.81335 3.90695 4.03535 4.08109 4.14209 4.28039 4.28810 4.35040 4.38264 4.44282 4.52249 4.64313 4.64980 4.70578 4.74918 4.76999 4.89614 4.98544 5.01233 5.08306 5.15483 5.27146 5.29567 5.39635 5.62380 5.83782 6.12672 6.23025 6.33155 6.72387 7.01425 7.05534 8.49235 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020988 B = 0.001738 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.796077 B =16102.650731 C =17002.723824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.045 4.045 3 C -0.071 4.071 4 N -0.501 5.501 5 C 0.177 3.823 6 C 0.165 3.835 7 N -0.704 5.704 8 C 0.080 3.920 9 C -0.086 4.086 10 H 0.087 0.913 11 C -0.108 4.108 12 C 0.086 3.914 13 N -0.618 5.618 14 C 0.540 3.460 15 O -0.572 6.572 16 C -0.098 4.098 17 S -0.199 6.199 18 C -0.613 4.613 19 H 0.076 0.924 20 C -0.019 4.019 21 N -0.912 5.912 22 Si 1.138 2.862 23 H -0.280 1.280 24 H -0.262 1.262 25 H -0.262 1.262 26 C 0.116 3.884 27 O -0.213 6.213 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.200 0.800 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.348 0.652 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.114 0.886 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.259 0.741 44 H 0.048 0.952 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.933 -12.380 -29.032 36.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.098 4.098 3 C -0.209 4.209 4 N -0.231 5.231 5 C -0.030 4.030 6 C 0.036 3.964 7 N -0.337 5.337 8 C -0.048 4.048 9 C -0.106 4.106 10 H 0.105 0.895 11 C -0.146 4.146 12 C -0.036 4.036 13 N -0.352 5.352 14 C 0.328 3.672 15 O -0.451 6.451 16 C -0.249 4.249 17 S 0.028 5.972 18 C -0.761 4.761 19 H 0.094 0.906 20 C -0.222 4.222 21 N -0.548 5.548 22 Si 0.955 3.045 23 H -0.205 1.205 24 H -0.187 1.187 25 H -0.187 1.187 26 C -0.006 4.006 27 O -0.100 6.100 28 H 0.119 0.881 29 H 0.104 0.896 30 H 0.128 0.872 31 H 0.216 0.784 32 H 0.135 0.865 33 H 0.106 0.894 34 H 0.166 0.834 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.132 0.868 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.760 -9.774 -27.292 33.485 hybrid contribution -1.406 -1.557 -1.435 2.541 sum -18.166 -11.331 -28.727 35.827 Atomic orbital electron populations 1.20502 0.80965 1.05681 1.05185 1.24254 0.96612 0.83860 1.05099 1.23552 0.87506 1.01859 1.07966 1.70413 1.24438 1.10522 1.17735 1.26598 0.84685 0.90448 1.01258 1.20302 0.88218 0.96321 0.91551 1.60325 1.09353 1.51860 1.12200 1.21916 0.92295 0.96065 0.94527 1.22273 0.98456 0.93531 0.96303 0.89482 1.22680 0.96236 1.00441 0.95262 1.22434 1.01065 0.80811 0.99314 1.48519 1.51007 1.16240 1.19469 1.19783 0.80239 0.85392 0.81748 1.90691 1.56795 1.19791 1.77840 1.23143 1.02532 1.02289 0.96935 1.85119 1.67188 1.24089 1.20843 1.24024 1.38584 1.03255 1.10227 0.90550 1.27910 0.98449 0.98060 0.97828 1.70919 1.35202 1.08942 1.39687 0.82707 0.74526 0.73365 0.73855 1.20508 1.18674 1.18655 1.22256 0.92879 0.97621 0.87816 1.84378 1.18132 1.37353 1.70128 0.88081 0.89647 0.87166 0.78350 0.86490 0.89397 0.83393 0.89571 0.90804 0.88388 0.86788 0.90355 0.90539 0.87321 0.87362 0.92973 0.93286 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.43 71.24 0.74 0.33 16 2 C -0.05 -0.70 7.39 24.79 0.18 -0.52 16 3 C -0.07 -1.34 11.80 83.39 0.98 -0.36 16 4 N -0.50 -12.04 11.29 -303.83 -3.43 -15.47 16 5 C 0.18 3.42 7.85 88.34 0.69 4.12 16 6 C 0.17 2.01 6.31 85.56 0.54 2.54 16 7 N -0.70 -9.53 6.43 -517.94 -3.33 -12.86 16 8 C 0.08 0.72 5.14 86.30 0.44 1.16 16 9 C -0.09 -1.14 3.18 -9.48 -0.03 -1.17 16 10 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 11 C -0.11 -1.03 6.42 31.78 0.20 -0.83 16 12 C 0.09 1.56 6.49 86.73 0.56 2.12 16 13 N -0.62 -17.99 3.33 -812.22 -2.70 -20.70 16 14 C 0.54 22.22 7.87 87.66 0.69 22.91 16 15 O -0.57 -29.30 16.12 -3.04 -0.05 -29.35 16 16 C -0.10 -4.15 5.35 71.24 0.38 -3.77 16 17 S -0.20 -11.46 19.60 -56.49 -1.11 -12.57 16 18 C -0.61 -36.19 9.50 67.95 0.65 -35.54 16 19 H 0.08 4.19 7.80 -2.92 -0.02 4.17 16 20 C -0.02 -1.15 5.49 84.86 0.47 -0.69 16 21 N -0.91 -59.15 13.67 21.65 0.30 -58.86 16 22 Si 1.14 49.77 29.92 68.60 2.05 51.82 16 23 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 24 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 25 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 26 C 0.12 2.88 6.32 86.78 0.55 3.43 16 27 O -0.21 -3.90 10.78 -3.79 -0.04 -3.94 16 28 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.20 2.70 8.06 -2.91 -0.02 2.67 16 32 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.35 4.52 8.72 -89.69 -0.78 3.74 16 35 H 0.09 0.78 7.96 -2.39 -0.02 0.76 16 36 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.10 0.66 8.04 -2.39 -0.02 0.64 16 38 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.11 4.20 8.14 -2.39 -0.02 4.18 16 42 H 0.11 4.18 8.14 -2.40 -0.02 4.17 16 43 H 0.26 17.58 7.12 -92.71 -0.66 16.92 16 44 H 0.05 1.53 8.04 -2.39 -0.02 1.51 16 45 H 0.07 1.64 7.90 -2.39 -0.02 1.62 16 Total: -1.00 -90.35 393.36 -0.94 -91.29 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.32 Total: 16.89 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 7.06 Total: -6.26 kcal Atomic # 7 Polarization: -98.72 SS G_CDS: -9.17 Total: -107.89 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.09 Total: -33.29 kcal Atomic # 14 Polarization: 49.77 SS G_CDS: 2.05 Total: 51.82 kcal Atomic # 16 Polarization: -11.46 SS G_CDS: -1.11 Total: -12.57 kcal Total: -90.35 -0.94 -91.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267031280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.781 kcal (2) G-P(sol) polarization free energy of solvation -90.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds