Wall clock time and date at job start Tue Mar 31 2020 22:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.32770 * 123.45723 * 2 1 4 4 S 1.75503 * 110.57549 * 180.02562 * 3 2 1 5 5 C 1.70445 * 92.44363 * 359.79970 * 4 3 2 6 6 C 1.36008 * 110.81660 * 0.34988 * 5 4 3 7 7 C 1.47196 * 123.45886 * 179.85746 * 6 5 4 8 8 O 1.21640 * 119.99599 * 179.70201 * 7 6 5 9 9 N 1.34773 * 119.99993 * 359.70635 * 7 6 5 10 10 C 1.46506 * 119.99969 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47237 * 179.72043 * 10 9 7 12 12 C 1.52996 * 109.46929 * 179.97438 * 11 10 9 13 13 H 1.09006 * 109.47486 * 304.99942 * 12 11 10 14 14 C 1.53008 * 109.47006 * 185.00107 * 12 11 10 15 15 N 1.46899 * 109.47415 * 65.00517 * 12 11 10 16 16 C 1.46898 * 111.00116 * 204.99990 * 15 12 11 17 17 C 1.50697 * 109.47251 * 179.97438 * 16 15 12 18 18 O 1.21292 * 119.99669 * 359.97438 * 17 16 15 19 19 N 1.34769 * 120.00047 * 180.02562 * 17 16 15 20 20 C 1.37100 * 120.00011 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99906 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99978 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99850 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00124 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46871 * 90.00385 * 24 22 20 26 26 H 1.48498 * 109.46961 * 210.00258 * 24 22 20 27 27 H 1.48493 * 109.46960 * 330.00325 * 24 22 20 28 28 H 1.08999 * 109.47073 * 269.98265 * 1 2 3 29 29 H 1.08993 * 109.46746 * 29.97897 * 1 2 3 30 30 H 1.09000 * 109.46736 * 149.97732 * 1 2 3 31 31 H 1.08000 * 124.71133 * 0.02562 * 3 2 1 32 32 H 1.08001 * 124.59463 * 180.22121 * 5 4 3 33 33 H 0.97005 * 120.00161 * 359.72118 * 9 7 6 34 34 H 1.09001 * 109.46512 * 299.72412 * 10 9 7 35 35 H 1.08998 * 109.47174 * 59.71534 * 10 9 7 36 36 H 1.09000 * 109.46986 * 299.99958 * 11 10 9 37 37 H 1.09002 * 109.46857 * 60.00093 * 11 10 9 38 38 H 1.08999 * 109.47047 * 300.00509 * 14 12 11 39 39 H 1.08999 * 109.47043 * 60.00087 * 14 12 11 40 40 H 1.09002 * 109.46750 * 180.02562 * 14 12 11 41 41 H 1.00905 * 110.99424 * 328.94971 * 15 12 11 42 42 H 1.08995 * 109.47098 * 299.99749 * 16 15 12 43 43 H 1.08997 * 109.46885 * 59.99536 * 16 15 12 44 44 H 0.97004 * 120.00183 * 359.97438 * 19 17 16 45 45 H 0.96994 * 120.00252 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2391 1.1077 0.0000 4 16 3.9499 0.7164 -0.0007 5 6 3.6411 -0.9598 0.0049 6 6 2.3033 -1.2048 -0.0005 7 6 1.7263 -2.5590 -0.0006 8 8 0.5188 -2.7055 -0.0002 9 7 2.5359 -3.6365 -0.0011 10 6 1.9616 -4.9843 -0.0017 11 6 3.0886 -6.0189 -0.0092 12 6 2.4888 -7.4264 -0.0092 13 1 1.8081 -7.5313 0.8357 14 6 3.6115 -8.4592 0.1091 15 7 1.7525 -7.6449 -1.2614 16 6 0.7100 -8.6652 -1.0879 17 6 -0.0227 -8.8612 -2.3902 18 8 0.2924 -8.2143 -3.3666 19 7 -1.0285 -9.7547 -2.4695 20 6 -1.6947 -9.9334 -3.6544 21 1 -1.4137 -9.3579 -4.5240 22 6 -2.7315 -10.8549 -3.7364 23 7 -3.3697 -11.0266 -4.8723 24 14 -3.2171 -11.8508 -2.2325 25 1 -4.2599 -11.1187 -1.4697 26 1 -3.7513 -13.1679 -2.6624 27 1 -2.0261 -12.0572 -1.3699 28 1 -0.3633 -0.0003 1.0277 29 1 -0.3632 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.8374 2.1102 0.0004 32 1 4.4044 -1.7239 0.0099 33 1 3.4989 -3.5196 -0.0054 34 1 1.3504 -5.1191 0.8907 35 1 1.3424 -5.1149 -0.8892 36 1 3.6998 -5.8840 -0.9016 37 1 3.7077 -5.8882 0.8784 38 1 4.2922 -8.3543 -0.7356 39 1 4.1578 -8.2971 1.0383 40 1 3.1841 -9.4620 0.1087 41 1 1.3597 -6.7814 -1.6052 42 1 1.1692 -9.6058 -0.7839 43 1 0.0069 -8.3395 -0.3213 44 1 -1.2807 -10.2718 -1.6886 45 1 -4.0936 -11.6696 -4.9294 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267125522.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:44 Heat of formation + Delta-G solvation = -72.153690 kcal Electronic energy + Delta-G solvation = -26023.241683 eV Core-core repulsion = 22165.955949 eV Total energy + Delta-G solvation = -3857.285733 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.10301 -40.37872 -38.66833 -37.98011 -36.13177 -35.79565 -33.78979 -32.98702 -31.95718 -29.88170 -28.53004 -28.20351 -25.89164 -25.33287 -23.94378 -22.00424 -21.38043 -21.29181 -20.33195 -19.86811 -18.68959 -18.05507 -17.74342 -17.21661 -16.94098 -16.71846 -16.43203 -16.07081 -15.57931 -15.45316 -15.09343 -14.85893 -14.54764 -14.43352 -14.40089 -14.15699 -14.11382 -13.93044 -13.58624 -13.40592 -13.17074 -13.04847 -12.91841 -12.83306 -12.59019 -12.43494 -12.27464 -12.17285 -11.97996 -11.86223 -11.74088 -11.53291 -10.90181 -10.45592 -10.26880 -10.24714 -9.87016 -9.33828 -9.25409 -8.42899 -6.04003 -0.23589 0.62566 0.93567 0.94664 1.28652 1.34363 1.43293 1.93402 2.10433 2.21715 2.28377 2.71924 3.13217 3.39091 3.69694 3.78800 3.86552 4.01157 4.11137 4.15126 4.18491 4.37000 4.40171 4.46493 4.51868 4.58653 4.62153 4.65566 4.71364 4.77886 4.96051 4.96428 5.01617 5.03744 5.18998 5.25677 5.35154 5.48430 5.52082 5.54767 5.89958 6.08390 6.37578 6.47941 6.57969 6.86007 7.17433 7.37489 7.94252 8.74850 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015541 B = 0.001990 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.249581 B =14068.070482 C =15192.467519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.081 4.081 3 C -0.248 4.248 4 S 0.248 5.752 5 C -0.204 4.204 6 C -0.186 4.186 7 C 0.567 3.433 8 O -0.577 6.577 9 N -0.709 5.709 10 C 0.117 3.883 11 C -0.118 4.118 12 C 0.084 3.916 13 H 0.058 0.942 14 C -0.136 4.136 15 N -0.685 5.685 16 C 0.061 3.939 17 C 0.446 3.554 18 O -0.615 6.615 19 N -0.591 5.591 20 C -0.330 4.330 21 H 0.054 0.946 22 C -0.017 4.017 23 N -0.934 5.934 24 Si 0.966 3.034 25 H -0.258 1.258 26 H -0.273 1.273 27 H -0.230 1.230 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.189 0.811 32 H 0.198 0.802 33 H 0.415 0.585 34 H 0.063 0.937 35 H 0.041 0.959 36 H 0.081 0.919 37 H 0.110 0.890 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.050 0.950 41 H 0.340 0.660 42 H 0.115 0.885 43 H 0.073 0.927 44 H 0.390 0.610 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.712 20.544 21.118 35.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.092 4.092 3 C -0.382 4.382 4 S 0.516 5.484 5 C -0.342 4.342 6 C -0.205 4.205 7 C 0.354 3.646 8 O -0.458 6.458 9 N -0.362 5.362 10 C -0.007 4.007 11 C -0.156 4.156 12 C -0.026 4.026 13 H 0.076 0.924 14 C -0.194 4.194 15 N -0.320 5.320 16 C -0.071 4.071 17 C 0.234 3.766 18 O -0.500 6.500 19 N -0.232 5.232 20 C -0.459 4.459 21 H 0.072 0.928 22 C -0.215 4.215 23 N -0.575 5.575 24 Si 0.786 3.214 25 H -0.183 1.183 26 H -0.198 1.198 27 H -0.153 1.153 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.206 0.794 32 H 0.215 0.785 33 H 0.253 0.747 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.128 0.872 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.069 0.931 41 H 0.161 0.839 42 H 0.133 0.867 43 H 0.091 0.909 44 H 0.225 0.775 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 20.742 21.203 20.092 35.826 hybrid contribution -2.587 -1.210 0.288 2.871 sum 18.155 19.993 20.380 33.833 Atomic orbital electron populations 1.20575 0.89542 1.03094 1.02578 1.19995 0.97587 0.90805 1.00810 1.25639 0.97595 1.03000 1.12008 1.82857 1.03591 0.94807 1.67191 1.26044 0.98930 1.04984 1.04254 1.20098 0.93438 0.93266 1.13650 1.18070 0.86028 0.84904 0.75594 1.90762 1.16130 1.87154 1.51772 1.45666 1.10622 1.05052 1.74811 1.21387 0.97043 0.81190 1.01085 1.21904 0.97132 0.91482 1.05114 1.21636 0.95957 0.95196 0.89781 0.92435 1.21785 0.97409 0.97875 1.02331 1.60255 1.28496 1.12933 1.30284 1.21686 0.93739 0.99264 0.92450 1.21042 0.81969 0.81888 0.91656 1.90540 1.68335 1.50352 1.40748 1.42034 1.31997 1.37810 1.11402 1.19006 1.14533 1.22585 0.89765 0.92815 1.26154 0.95513 0.98337 1.01529 1.69807 1.23401 1.36482 1.27764 0.85347 0.80281 0.78079 0.77708 1.18250 1.19793 1.15349 0.91251 0.90153 0.92040 0.79412 0.78452 0.74741 0.91827 0.94022 0.90060 0.87150 0.92770 0.89878 0.93129 0.83914 0.86700 0.90916 0.77459 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.10 9.55 71.24 0.68 -1.42 16 2 C -0.08 -1.60 6.01 -19.46 -0.12 -1.72 16 3 C -0.25 -3.26 10.91 66.64 0.73 -2.54 16 4 S 0.25 2.19 23.02 -56.49 -1.30 0.89 16 5 C -0.20 -2.38 10.38 67.30 0.70 -1.68 16 6 C -0.19 -3.68 5.98 -19.87 -0.12 -3.80 16 7 C 0.57 14.23 7.79 86.60 0.67 14.90 16 8 O -0.58 -19.71 14.21 -4.16 -0.06 -19.77 16 9 N -0.71 -12.97 5.52 -466.58 -2.58 -15.55 16 10 C 0.12 2.42 5.50 86.38 0.48 2.89 16 11 C -0.12 -1.76 4.92 30.59 0.15 -1.61 16 12 C 0.08 1.61 2.65 44.92 0.12 1.73 16 13 H 0.06 1.01 7.80 -2.38 -0.02 0.99 16 14 C -0.14 -2.27 9.42 71.98 0.68 -1.59 16 15 N -0.68 -20.39 5.93 -495.58 -2.94 -23.33 16 16 C 0.06 1.94 5.96 85.56 0.51 2.45 16 17 C 0.45 21.06 7.82 87.66 0.69 21.75 16 18 O -0.62 -35.59 15.78 -3.07 -0.05 -35.64 16 19 N -0.59 -28.93 5.09 -307.00 -1.56 -30.50 16 20 C -0.33 -19.94 10.16 84.04 0.85 -19.09 16 21 H 0.05 3.87 7.39 -2.91 -0.02 3.85 16 22 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 23 N -0.93 -57.59 13.96 21.66 0.30 -57.29 16 24 Si 0.97 39.80 27.74 68.60 1.90 41.71 16 25 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 27 H -0.23 -7.98 6.52 99.48 0.65 -7.33 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 1.32 8.13 -2.39 -0.02 1.30 16 30 H 0.06 1.72 6.02 -2.39 -0.01 1.70 16 31 H 0.19 1.56 8.06 -2.91 -0.02 1.54 16 32 H 0.20 0.94 7.01 -2.91 -0.02 0.92 16 33 H 0.41 4.34 6.97 -92.70 -0.65 3.69 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.04 1.15 6.43 -2.39 -0.02 1.14 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.05 0.92 7.45 -2.39 -0.02 0.90 16 41 H 0.34 11.39 6.17 -89.69 -0.55 10.83 16 42 H 0.12 3.08 7.43 -2.39 -0.02 3.06 16 43 H 0.07 1.96 8.05 -2.39 -0.02 1.94 16 44 H 0.39 15.79 5.76 -92.71 -0.53 15.25 16 45 H 0.28 15.71 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -87.37 384.37 -0.55 -87.91 By element: Atomic # 1 Polarization: 42.52 SS G_CDS: -0.75 Total: 41.78 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 6.48 Total: 9.78 kcal Atomic # 7 Polarization: -119.89 SS G_CDS: -6.78 Total: -126.67 kcal Atomic # 8 Polarization: -55.30 SS G_CDS: -0.11 Total: -55.41 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 1.90 Total: 41.71 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -1.30 Total: 0.89 kcal Total: -87.37 -0.55 -87.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267125522.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.759 kcal (2) G-P(sol) polarization free energy of solvation -87.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds