Wall clock time and date at job start Tue Mar 31 2020 22:05:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 O 1.34039 * 126.77504 * 2 1
4 4 N 1.20919 * 111.56751 * 180.29166 * 3 2 1
5 5 C 1.30178 * 111.60481 * 359.76271 * 4 3 2
6 6 C 1.35451 * 126.77852 * 179.89724 * 2 1 3
7 7 C 1.50703 * 128.00492 * 0.02562 * 6 2 1
8 8 N 1.46904 * 109.46926 * 79.70580 * 7 6 2
9 9 C 1.46844 * 110.99983 * 66.04568 * 8 7 6
10 10 C 1.53039 * 109.51841 * 185.83573 * 9 8 7
11 11 C 1.53117 * 109.28031 * 300.81797 * 10 9 8
12 12 C 1.53120 * 109.15865 * 57.65796 * 11 10 9
13 13 H 1.08999 * 109.50166 * 62.32511 * 12 11 10
14 14 N 1.46498 * 109.50058 * 182.40514 * 12 11 10
15 15 C 1.34777 * 119.99828 * 274.71971 * 14 12 11
16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 12
17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 12
18 18 S 1.81000 * 109.47389 * 180.02562 * 17 15 14
19 19 C 1.76198 * 99.99715 * 179.97438 * 18 17 15
20 20 H 1.08001 * 120.00516 * 0.02562 * 19 18 17
21 21 C 1.38803 * 119.99710 * 179.97438 * 19 18 17
22 22 N 1.31634 * 120.00163 * 0.02562 * 21 19 18
23 23 Si 1.86799 * 120.00011 * 179.97438 * 21 19 18
24 24 H 1.48505 * 109.46661 * 60.00586 * 23 21 19
25 25 H 1.48501 * 109.47391 * 180.02562 * 23 21 19
26 26 H 1.48497 * 109.47355 * 300.00441 * 23 21 19
27 27 C 1.46845 * 110.99522 * 190.25269 * 8 7 6
28 28 H 1.09000 * 109.47040 * 270.10585 * 1 2 3
29 29 H 1.08995 * 109.47904 * 30.10631 * 1 2 3
30 30 H 1.09008 * 109.47162 * 150.10982 * 1 2 3
31 31 H 1.07994 * 126.80325 * 179.97438 * 5 4 3
32 32 H 1.08995 * 109.47143 * 319.70147 * 7 6 2
33 33 H 1.09002 * 109.46758 * 199.70552 * 7 6 2
34 34 H 1.08998 * 109.46405 * 65.82156 * 9 8 7
35 35 H 1.08995 * 109.46403 * 305.85135 * 9 8 7
36 36 H 1.09007 * 109.49943 * 180.87934 * 10 9 8
37 37 H 1.08995 * 109.53403 * 60.78524 * 10 9 8
38 38 H 1.08997 * 109.52188 * 297.75564 * 11 10 9
39 39 H 1.08999 * 109.57369 * 177.59461 * 11 10 9
40 40 H 0.97001 * 120.00384 * 95.00418 * 14 12 11
41 41 H 1.08998 * 109.46954 * 300.00581 * 17 15 14
42 42 H 1.09002 * 109.46946 * 59.99717 * 17 15 14
43 43 H 0.96991 * 119.99795 * 179.97438 * 22 21 19
44 44 H 1.09009 * 109.46449 * 54.14650 * 27 8 7
45 45 H 1.09003 * 109.46662 * 294.17668 * 27 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.3094 1.0736 0.0000
4 7 3.4763 0.7565 -0.0057
5 6 3.6213 -0.5372 -0.0052
6 6 2.3180 -1.0849 0.0019
7 6 1.9224 -2.5391 0.0040
8 7 1.5556 -2.9487 -1.3582
9 6 2.7195 -2.9045 -2.2525
10 6 2.2733 -3.1949 -3.6873
11 6 1.6160 -4.5767 -3.7425
12 6 0.4366 -4.6115 -2.7666
13 1 -0.3094 -3.8773 -3.0710
14 7 -0.1626 -5.9483 -2.7710
15 6 -1.0914 -6.2674 -3.6940
16 8 -1.4275 -5.4495 -4.5241
17 6 -1.7123 -7.6406 -3.6948
18 16 -2.9124 -7.7594 -5.0445
19 6 -3.4662 -9.4165 -4.8165
20 1 -3.0584 -10.0170 -4.0168
21 6 -4.4274 -9.9498 -5.6640
22 7 -4.9248 -9.2177 -6.6384
23 14 -5.0140 -11.7068 -5.4228
24 1 -5.6103 -11.8481 -4.0701
25 1 -6.0347 -12.0335 -6.4508
26 1 -3.8631 -12.6356 -5.5560
27 6 0.9360 -4.2800 -1.3585
28 1 -0.3633 0.0019 1.0277
29 1 -0.3635 0.8889 -0.5154
30 1 -0.3634 -0.8910 -0.5122
31 1 4.5528 -1.0838 -0.0099
32 1 1.0706 -2.6830 0.6686
33 1 2.7605 -3.1431 0.3518
34 1 3.4466 -3.6538 -1.9396
35 1 3.1751 -1.9154 -2.2069
36 1 3.1398 -3.1774 -4.3484
37 1 1.5568 -2.4380 -4.0063
38 1 2.3439 -5.3377 -3.4614
39 1 1.2580 -4.7707 -4.7536
40 1 0.1062 -6.6025 -2.1071
41 1 -0.9342 -8.3911 -3.8338
42 1 -2.2165 -7.8119 -2.7437
43 1 -5.5962 -9.5906 -7.2309
44 1 0.0962 -4.2900 -0.6636
45 1 1.6715 -5.0230 -1.0497
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001267611337.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:05:43
Heat of formation + Delta-G solvation = 22.024218 kcal
Electronic energy + Delta-G solvation = -26497.135296 eV
Core-core repulsion = 22643.933423 eV
Total energy + Delta-G solvation = -3853.201873 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-45.24984 -40.00889 -38.56819 -35.73135 -34.04618 -33.45842 -32.64390 -32.43598
-30.53836 -28.77212 -28.08736 -26.95211 -25.49108 -23.75882 -23.12492 -22.76739
-20.90439 -20.31805 -19.98028 -17.96094 -17.86998 -17.40866 -16.63732 -16.38484
-15.63623 -15.41330 -15.12910 -15.00990 -14.81246 -14.36052 -14.23844 -14.05530
-13.83641 -13.62983 -13.49614 -13.17179 -13.11500 -12.90489 -12.58776 -12.46149
-12.33321 -12.00956 -11.58476 -11.40821 -11.15343 -11.05376 -11.05035 -10.96026
-10.79463 -10.70151 -10.61997 -9.83253 -9.52397 -9.38454 -9.07199 -8.91410
-8.74397 -8.24879 -6.50821 -6.22333 -3.93005 1.13643 1.84745 2.76785
2.95948 3.08280 3.22586 3.25217 3.28383 3.51583 3.85100 3.93546
4.19720 4.26030 4.42098 4.50651 4.58460 4.69026 4.78088 4.89902
5.03772 5.07754 5.09644 5.09906 5.12662 5.15074 5.21138 5.24688
5.36847 5.40667 5.47931 5.56895 5.60114 5.63474 5.72851 5.75299
5.87777 5.90820 6.12203 6.13536 6.19571 6.51174 6.61812 6.75259
7.58320 7.69430 7.92354 8.34089 8.60945 9.22791 10.84987
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.029695 B = 0.001856 C = 0.001832
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 942.680392 B =15083.172843 C =15282.604680
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 C -0.004 4.004
3 O 0.092 5.908
4 N -0.368 5.368
5 C -0.003 4.003
6 C -0.203 4.203
7 C 0.135 3.865
8 N -0.530 5.530
9 C 0.056 3.944
10 C -0.113 4.113
11 C -0.133 4.133
12 C 0.152 3.848
13 H 0.097 0.903
14 N -0.736 5.736
15 C 0.534 3.466
16 O -0.514 6.514
17 C -0.154 4.154
18 S -0.059 6.059
19 C -0.537 4.537
20 H 0.072 0.928
21 C 0.074 3.926
22 N -0.867 5.867
23 Si 0.919 3.081
24 H -0.274 1.274
25 H -0.283 1.283
26 H -0.274 1.274
27 C 0.052 3.948
28 H 0.086 0.914
29 H 0.083 0.917
30 H 0.102 0.898
31 H 0.186 0.814
32 H 0.090 0.910
33 H 0.049 0.951
34 H 0.034 0.966
35 H 0.074 0.926
36 H 0.069 0.931
37 H 0.074 0.926
38 H 0.059 0.941
39 H 0.075 0.925
40 H 0.396 0.604
41 H 0.089 0.911
42 H 0.089 0.911
43 H 0.269 0.731
44 H 0.083 0.917
45 H 0.040 0.960
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.529 14.663 16.516 27.586
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.068 4.068
3 O 0.028 5.972
4 N -0.072 5.072
5 C -0.182 4.182
6 C -0.207 4.207
7 C 0.007 3.993
8 N -0.255 5.255
9 C -0.072 4.072
10 C -0.152 4.152
11 C -0.171 4.171
12 C 0.046 3.954
13 H 0.115 0.885
14 N -0.390 5.390
15 C 0.320 3.680
16 O -0.388 6.388
17 C -0.304 4.304
18 S 0.167 5.833
19 C -0.685 4.685
20 H 0.090 0.910
21 C -0.136 4.136
22 N -0.503 5.503
23 Si 0.745 3.255
24 H -0.199 1.199
25 H -0.208 1.208
26 H -0.200 1.200
27 C -0.076 4.076
28 H 0.104 0.896
29 H 0.102 0.898
30 H 0.120 0.880
31 H 0.203 0.797
32 H 0.108 0.892
33 H 0.067 0.933
34 H 0.053 0.947
35 H 0.093 0.907
36 H 0.088 0.912
37 H 0.093 0.907
38 H 0.078 0.922
39 H 0.093 0.907
40 H 0.229 0.771
41 H 0.107 0.893
42 H 0.107 0.893
43 H 0.079 0.921
44 H 0.102 0.898
45 H 0.058 0.942
Dipole moment (debyes) X Y Z Total
from point charges 16.333 17.417 14.778 28.080
hybrid contribution 0.661 -3.818 1.732 4.245
sum 16.994 13.599 16.510 27.318
Atomic orbital electron populations
1.20421 0.83670 1.05466 1.03913 1.24375 0.96345 0.85499 1.00595
1.84812 1.11448 1.33312 1.67598 1.73896 0.97282 1.16737 1.19318
1.24903 0.99631 0.90428 1.03252 1.20870 0.91949 0.96980 1.10922
1.20206 1.00319 0.88467 0.90262 1.61793 1.29243 1.26439 1.08017
1.22147 0.90956 1.00993 0.93097 1.21532 1.00851 0.97540 0.95261
1.22003 0.97181 0.96876 1.01079 1.20786 0.95478 0.85356 0.93738
0.88482 1.46009 1.43350 1.14760 1.34879 1.20287 0.78033 0.89403
0.80237 1.90707 1.60557 1.50604 1.36920 1.23536 1.04123 0.95621
1.07149 1.85402 1.45260 1.18091 1.34504 1.22827 1.27786 0.98559
1.19305 0.91000 1.24994 0.95398 0.98713 0.94483 1.70005 1.27387
1.36568 1.16291 0.86228 0.78472 0.82721 0.78095 1.19940 1.20808
1.19965 1.22282 0.98952 0.88963 0.97448 0.89575 0.89819 0.87970
0.79696 0.89188 0.93276 0.94739 0.90741 0.91225 0.90730 0.92219
0.90671 0.77052 0.89303 0.89255 0.92119 0.89846 0.94229
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.40 10.30 36.01 0.37 -0.02 16
2 C 0.00 -0.03 7.49 -35.30 -0.26 -0.29 16
3 O 0.09 0.90 11.20 17.18 0.19 1.09 16
4 N -0.37 -3.81 12.07 30.35 0.37 -3.45 16
5 C 0.00 -0.02 11.44 -17.06 -0.20 -0.22 16
6 C -0.20 -1.52 4.86 -104.42 -0.51 -2.03 16
7 C 0.14 0.85 5.30 -4.97 -0.03 0.82 16
8 N -0.53 -4.06 4.65 -236.11 -1.10 -5.15 16
9 C 0.06 0.44 5.31 -3.83 -0.02 0.42 16
10 C -0.11 -1.04 6.09 -26.65 -0.16 -1.20 16
11 C -0.13 -1.44 5.58 -26.61 -0.15 -1.58 16
12 C 0.15 1.68 2.62 -67.85 -0.18 1.50 16
13 H 0.10 1.34 7.58 -51.93 -0.39 0.94 16
14 N -0.74 -9.12 5.08 -53.73 -0.27 -9.40 16
15 C 0.53 9.53 7.82 -10.98 -0.09 9.44 16
16 O -0.51 -11.29 15.52 5.55 0.09 -11.20 16
17 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16
18 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16
19 C -0.54 -15.11 9.50 30.94 0.29 -14.82 16
20 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16
21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16
22 N -0.87 -25.97 13.22 55.49 0.73 -25.24 16
23 Si 0.92 21.20 29.55 -169.99 -5.02 16.17 16
24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16
25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
26 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16
27 C 0.05 0.41 4.93 -3.83 -0.02 0.39 16
28 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16
29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16
30 H 0.10 0.56 8.05 -51.92 -0.42 0.14 16
31 H 0.19 1.04 8.06 -52.49 -0.42 0.62 16
32 H 0.09 0.47 7.98 -51.93 -0.41 0.06 16
33 H 0.05 0.27 8.12 -51.93 -0.42 -0.15 16
34 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16
35 H 0.07 0.61 6.54 -51.93 -0.34 0.27 16
36 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16
37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16
38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16
40 H 0.40 3.72 8.60 -40.82 -0.35 3.37 16
41 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16
42 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16
43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16
44 H 0.08 0.61 8.01 -51.92 -0.42 0.19 16
45 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16
LS Contribution 386.54 15.07 5.83 5.83
Total: -1.00 -34.65 386.54 -9.17 -43.82
By element:
Atomic # 1 Polarization: 6.65 SS G_CDS: -6.95 Total: -0.30 kcal
Atomic # 6 Polarization: -7.57 SS G_CDS: -0.82 Total: -8.38 kcal
Atomic # 7 Polarization: -42.96 SS G_CDS: -0.27 Total: -43.23 kcal
Atomic # 8 Polarization: -10.39 SS G_CDS: 0.28 Total: -10.11 kcal
Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal
Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal
Total LS contribution 5.83 Total: 5.83 kcal
Total: -34.65 -9.17 -43.82 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001267611337.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.841 kcal
(2) G-P(sol) polarization free energy of solvation -34.650 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.192 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.817 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.024 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds