Wall clock time and date at job start Tue Mar 31 2020 22:05:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 O 1.34039 * 126.77504 * 2 1
4 4 N 1.20919 * 111.56751 * 180.29166 * 3 2 1
5 5 C 1.30178 * 111.60481 * 359.76271 * 4 3 2
6 6 C 1.35451 * 126.77852 * 179.89724 * 2 1 3
7 7 C 1.50703 * 128.00492 * 0.02562 * 6 2 1
8 8 N 1.46904 * 109.46926 * 79.70580 * 7 6 2
9 9 C 1.46844 * 110.99983 * 66.04568 * 8 7 6
10 10 C 1.53039 * 109.51841 * 185.83573 * 9 8 7
11 11 C 1.53117 * 109.28031 * 300.81797 * 10 9 8
12 12 C 1.53120 * 109.15865 * 57.65796 * 11 10 9
13 13 H 1.08999 * 109.50166 * 62.32511 * 12 11 10
14 14 N 1.46498 * 109.50058 * 182.40514 * 12 11 10
15 15 C 1.34777 * 119.99828 * 274.71971 * 14 12 11
16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 12
17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 12
18 18 S 1.81000 * 109.47389 * 180.02562 * 17 15 14
19 19 C 1.76198 * 99.99715 * 179.97438 * 18 17 15
20 20 H 1.08001 * 120.00516 * 0.02562 * 19 18 17
21 21 C 1.38803 * 119.99710 * 179.97438 * 19 18 17
22 22 N 1.31634 * 120.00163 * 0.02562 * 21 19 18
23 23 Si 1.86799 * 120.00011 * 179.97438 * 21 19 18
24 24 H 1.48505 * 109.46661 * 60.00586 * 23 21 19
25 25 H 1.48501 * 109.47391 * 180.02562 * 23 21 19
26 26 H 1.48497 * 109.47355 * 300.00441 * 23 21 19
27 27 C 1.46845 * 110.99522 * 190.25269 * 8 7 6
28 28 H 1.09000 * 109.47040 * 270.10585 * 1 2 3
29 29 H 1.08995 * 109.47904 * 30.10631 * 1 2 3
30 30 H 1.09008 * 109.47162 * 150.10982 * 1 2 3
31 31 H 1.07994 * 126.80325 * 179.97438 * 5 4 3
32 32 H 1.08995 * 109.47143 * 319.70147 * 7 6 2
33 33 H 1.09002 * 109.46758 * 199.70552 * 7 6 2
34 34 H 1.08998 * 109.46405 * 65.82156 * 9 8 7
35 35 H 1.08995 * 109.46403 * 305.85135 * 9 8 7
36 36 H 1.09007 * 109.49943 * 180.87934 * 10 9 8
37 37 H 1.08995 * 109.53403 * 60.78524 * 10 9 8
38 38 H 1.08997 * 109.52188 * 297.75564 * 11 10 9
39 39 H 1.08999 * 109.57369 * 177.59461 * 11 10 9
40 40 H 0.97001 * 120.00384 * 95.00418 * 14 12 11
41 41 H 1.08998 * 109.46954 * 300.00581 * 17 15 14
42 42 H 1.09002 * 109.46946 * 59.99717 * 17 15 14
43 43 H 0.96991 * 119.99795 * 179.97438 * 22 21 19
44 44 H 1.09009 * 109.46449 * 54.14650 * 27 8 7
45 45 H 1.09003 * 109.46662 * 294.17668 * 27 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.3094 1.0736 0.0000
4 7 3.4763 0.7565 -0.0057
5 6 3.6213 -0.5372 -0.0052
6 6 2.3180 -1.0849 0.0019
7 6 1.9224 -2.5391 0.0040
8 7 1.5556 -2.9487 -1.3582
9 6 2.7195 -2.9045 -2.2525
10 6 2.2733 -3.1949 -3.6873
11 6 1.6160 -4.5767 -3.7425
12 6 0.4366 -4.6115 -2.7666
13 1 -0.3094 -3.8773 -3.0710
14 7 -0.1626 -5.9483 -2.7710
15 6 -1.0914 -6.2674 -3.6940
16 8 -1.4275 -5.4495 -4.5241
17 6 -1.7123 -7.6406 -3.6948
18 16 -2.9124 -7.7594 -5.0445
19 6 -3.4662 -9.4165 -4.8165
20 1 -3.0584 -10.0170 -4.0168
21 6 -4.4274 -9.9498 -5.6640
22 7 -4.9248 -9.2177 -6.6384
23 14 -5.0140 -11.7068 -5.4228
24 1 -5.6103 -11.8481 -4.0701
25 1 -6.0347 -12.0335 -6.4508
26 1 -3.8631 -12.6356 -5.5560
27 6 0.9360 -4.2800 -1.3585
28 1 -0.3633 0.0019 1.0277
29 1 -0.3635 0.8889 -0.5154
30 1 -0.3634 -0.8910 -0.5122
31 1 4.5528 -1.0838 -0.0099
32 1 1.0706 -2.6830 0.6686
33 1 2.7605 -3.1431 0.3518
34 1 3.4466 -3.6538 -1.9396
35 1 3.1751 -1.9154 -2.2069
36 1 3.1398 -3.1774 -4.3484
37 1 1.5568 -2.4380 -4.0063
38 1 2.3439 -5.3377 -3.4614
39 1 1.2580 -4.7707 -4.7536
40 1 0.1062 -6.6025 -2.1071
41 1 -0.9342 -8.3911 -3.8338
42 1 -2.2165 -7.8119 -2.7437
43 1 -5.5962 -9.5906 -7.2309
44 1 0.0962 -4.2900 -0.6636
45 1 1.6715 -5.0230 -1.0497
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001267611337.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:05:42
Heat of formation + Delta-G solvation = -2.485119 kcal
Electronic energy + Delta-G solvation = -26498.198100 eV
Core-core repulsion = 22643.933423 eV
Total energy + Delta-G solvation = -3854.264677 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-45.86751 -41.05148 -39.61431 -36.55818 -34.99948 -34.56575 -34.05412 -33.38089
-31.71759 -29.68787 -28.93602 -27.63047 -27.52844 -24.48154 -23.93778 -23.36373
-21.80561 -21.37437 -20.79231 -19.77978 -18.60328 -18.05858 -17.79408 -17.54092
-16.86342 -16.56230 -16.35606 -16.07546 -15.87006 -15.69091 -15.05728 -14.92663
-14.79759 -14.60124 -14.40119 -14.28393 -13.89736 -13.74014 -13.55504 -13.47232
-13.15204 -12.99974 -12.87961 -12.85175 -12.61408 -12.37901 -12.01320 -11.89910
-11.81373 -11.72617 -11.55500 -11.25739 -11.11358 -10.88038 -10.25282 -10.13055
-10.01774 -9.30276 -8.64676 -8.32923 -6.10825 0.54779 1.24502 1.30315
1.44969 1.48502 1.57921 1.65551 2.19357 2.26588 2.30204 3.01028
3.06953 3.35034 3.40025 3.71223 3.74588 3.84325 3.93328 4.00202
4.05183 4.09138 4.28379 4.34072 4.36146 4.51272 4.53967 4.57404
4.59501 4.67854 4.71352 4.74344 4.76557 4.90650 4.93493 4.98248
5.07590 5.09679 5.24490 5.31025 5.32986 5.43168 5.50837 6.04654
6.07170 6.21152 6.55789 7.08241 7.30280 7.31820 8.75908
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.029695 B = 0.001856 C = 0.001832
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 942.680392 B =15083.172843 C =15282.604680
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 C -0.009 4.009
3 O 0.072 5.928
4 N -0.402 5.402
5 C 0.000 4.000
6 C -0.207 4.207
7 C 0.140 3.860
8 N -0.541 5.541
9 C 0.062 3.938
10 C -0.109 4.109
11 C -0.128 4.128
12 C 0.152 3.848
13 H 0.066 0.934
14 N -0.708 5.708
15 C 0.537 3.463
16 O -0.564 6.564
17 C -0.129 4.129
18 S -0.153 6.153
19 C -0.546 4.546
20 H 0.084 0.916
21 C 0.012 3.988
22 N -0.911 5.911
23 Si 0.998 3.002
24 H -0.261 1.261
25 H -0.280 1.280
26 H -0.262 1.262
27 C 0.063 3.937
28 H 0.105 0.895
29 H 0.086 0.914
30 H 0.100 0.900
31 H 0.208 0.792
32 H 0.104 0.896
33 H 0.065 0.935
34 H 0.050 0.950
35 H 0.072 0.928
36 H 0.078 0.922
37 H 0.055 0.945
38 H 0.076 0.924
39 H 0.038 0.962
40 H 0.416 0.584
41 H 0.109 0.891
42 H 0.111 0.889
43 H 0.271 0.729
44 H 0.095 0.905
45 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.860 12.916 19.291 29.291
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.073 4.073
3 O 0.011 5.989
4 N -0.110 5.110
5 C -0.179 4.179
6 C -0.211 4.211
7 C 0.013 3.987
8 N -0.266 5.266
9 C -0.065 4.065
10 C -0.148 4.148
11 C -0.167 4.167
12 C 0.047 3.953
13 H 0.084 0.916
14 N -0.362 5.362
15 C 0.322 3.678
16 O -0.442 6.442
17 C -0.280 4.280
18 S 0.074 5.926
19 C -0.694 4.694
20 H 0.102 0.898
21 C -0.193 4.193
22 N -0.548 5.548
23 Si 0.820 3.180
24 H -0.186 1.186
25 H -0.205 1.205
26 H -0.187 1.187
27 C -0.065 4.065
28 H 0.123 0.877
29 H 0.105 0.895
30 H 0.119 0.881
31 H 0.225 0.775
32 H 0.122 0.878
33 H 0.083 0.917
34 H 0.068 0.932
35 H 0.090 0.910
36 H 0.097 0.903
37 H 0.074 0.926
38 H 0.094 0.906
39 H 0.057 0.943
40 H 0.253 0.747
41 H 0.127 0.873
42 H 0.130 0.870
43 H 0.080 0.920
44 H 0.114 0.886
45 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 17.689 15.677 17.613 29.477
hybrid contribution 0.335 -3.191 0.911 3.335
sum 18.025 12.486 18.524 28.704
Atomic orbital electron populations
1.20514 0.82099 1.05525 1.05113 1.24902 0.97320 0.85318 0.99774
1.84776 1.11598 1.34215 1.68307 1.73888 0.97771 1.18097 1.21245
1.25349 1.00855 0.89954 1.01705 1.21068 0.91559 0.97626 1.10865
1.20258 1.01530 0.87580 0.89368 1.61709 1.29460 1.26430 1.09049
1.22056 0.91222 1.01320 0.91917 1.21488 1.00563 0.95838 0.96906
1.21932 0.97371 0.98437 0.98941 1.20856 0.94636 0.83488 0.96342
0.91592 1.45701 1.41210 1.15851 1.33420 1.20029 0.78764 0.88283
0.80682 1.90701 1.62546 1.51675 1.39240 1.23373 1.02626 0.97437
1.04574 1.85607 1.48631 1.19006 1.39354 1.23177 1.27968 0.98599
1.19642 0.89834 1.26137 0.95424 1.03759 0.93939 1.70180 1.28186
1.38928 1.17490 0.85009 0.78133 0.76424 0.78463 1.18566 1.20536
1.18690 1.22157 0.99935 0.89663 0.94786 0.87713 0.89475 0.88124
0.77548 0.87793 0.91661 0.93182 0.90966 0.90302 0.92616 0.90564
0.94288 0.74663 0.87305 0.87041 0.92043 0.88634 0.92012
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.67 10.30 71.24 0.73 0.06 16
2 C -0.01 -0.13 7.49 25.04 0.19 0.06 16
3 O 0.07 1.38 11.20 71.65 0.80 2.19 16
4 N -0.40 -8.15 12.07 -59.26 -0.72 -8.87 16
5 C 0.00 0.00 11.44 85.71 0.98 0.98 16
6 C -0.21 -2.67 4.86 -19.73 -0.10 -2.77 16
7 C 0.14 1.27 5.30 85.56 0.45 1.72 16
8 N -0.54 -6.80 4.65 -900.92 -4.19 -10.99 16
9 C 0.06 0.83 5.31 86.33 0.46 1.28 16
10 C -0.11 -1.90 6.09 30.65 0.19 -1.72 16
11 C -0.13 -2.66 5.58 30.67 0.17 -2.49 16
12 C 0.15 3.16 2.62 45.04 0.12 3.28 16
13 H 0.07 1.84 7.58 -2.39 -0.02 1.82 16
14 N -0.71 -16.15 5.08 -442.28 -2.25 -18.40 16
15 C 0.54 18.92 7.82 87.66 0.69 19.60 16
16 O -0.56 -25.62 15.52 -3.04 -0.05 -25.66 16
17 C -0.13 -4.90 6.16 71.24 0.44 -4.46 16
18 S -0.15 -8.40 20.57 -56.49 -1.16 -9.56 16
19 C -0.55 -30.78 9.50 67.96 0.65 -30.13 16
20 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16
21 C 0.01 0.69 5.49 84.86 0.47 1.15 16
22 N -0.91 -55.76 13.22 21.65 0.29 -55.48 16
23 Si 1.00 43.07 29.55 68.60 2.03 45.10 16
24 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16
25 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16
26 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16
27 C 0.06 0.78 4.93 86.33 0.43 1.20 16
28 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16
29 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16
30 H 0.10 0.95 8.05 -2.38 -0.02 0.94 16
31 H 0.21 1.82 8.06 -2.91 -0.02 1.80 16
32 H 0.10 0.69 7.98 -2.39 -0.02 0.67 16
33 H 0.07 0.43 8.12 -2.39 -0.02 0.41 16
34 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16
35 H 0.07 1.03 6.54 -2.39 -0.02 1.01 16
36 H 0.08 1.21 8.14 -2.38 -0.02 1.20 16
37 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16
38 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16
39 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16
40 H 0.42 6.31 8.60 -92.71 -0.80 5.51 16
41 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16
42 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16
43 H 0.27 15.42 8.31 -92.72 -0.77 14.65 16
44 H 0.10 1.01 8.01 -2.38 -0.02 0.99 16
45 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16
Total: -1.00 -79.26 386.54 0.81 -78.45
By element:
Atomic # 1 Polarization: 15.25 SS G_CDS: 0.20 Total: 15.45 kcal
Atomic # 6 Polarization: -18.08 SS G_CDS: 5.85 Total: -12.23 kcal
Atomic # 7 Polarization: -86.87 SS G_CDS: -6.86 Total: -93.73 kcal
Atomic # 8 Polarization: -24.23 SS G_CDS: 0.76 Total: -23.48 kcal
Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal
Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal
Total: -79.26 0.81 -78.45 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001267611337.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.966 kcal
(2) G-P(sol) polarization free energy of solvation -79.265 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.299 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.814 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.451 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.485 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds