Wall clock time and date at job start Tue Mar 31 2020 22:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35451 * 128.00714 * 2 1 4 4 O 1.34035 * 106.44662 * 179.97438 * 3 2 1 5 5 N 1.20928 * 111.56667 * 359.70371 * 4 3 2 6 6 C 1.30174 * 111.60391 * 0.49220 * 5 4 3 7 7 C 1.50699 * 126.80314 * 179.79959 * 6 5 4 8 8 N 1.46902 * 109.46811 * 269.67971 * 7 6 5 9 9 C 1.46849 * 110.99983 * 66.04321 * 8 7 6 10 10 C 1.53038 * 109.52243 * 185.83707 * 9 8 7 11 11 C 1.53119 * 109.28082 * 300.82303 * 10 9 8 12 12 C 1.53118 * 109.15841 * 57.65504 * 11 10 9 13 13 H 1.08996 * 109.50190 * 62.32806 * 12 11 10 14 14 N 1.46504 * 109.49993 * 182.40666 * 12 11 10 15 15 C 1.34779 * 119.99957 * 274.99601 * 14 12 11 16 16 O 1.21281 * 119.99517 * 0.02562 * 15 14 12 17 17 C 1.50693 * 120.00222 * 179.97438 * 15 14 12 18 18 S 1.81002 * 109.47406 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00182 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99976 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99949 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99820 * 0.27912 * 21 19 18 23 23 Si 1.86800 * 119.99759 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46758 * 90.00172 * 23 21 19 25 25 H 1.48499 * 109.47026 * 210.00020 * 23 21 19 26 26 H 1.48496 * 109.47474 * 330.00056 * 23 21 19 27 27 C 1.46846 * 111.00012 * 190.25625 * 8 7 6 28 28 H 1.08997 * 109.47646 * 270.04188 * 1 2 3 29 29 H 1.09000 * 109.47467 * 30.05008 * 1 2 3 30 30 H 1.09005 * 109.47204 * 150.04767 * 1 2 3 31 31 H 1.08001 * 126.77242 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47383 * 149.67849 * 7 6 5 33 33 H 1.08994 * 109.47364 * 29.67851 * 7 6 5 34 34 H 1.09004 * 109.46207 * 65.82297 * 9 8 7 35 35 H 1.08997 * 109.46464 * 305.85601 * 9 8 7 36 36 H 1.09002 * 109.50082 * 180.88070 * 10 9 8 37 37 H 1.09002 * 109.50142 * 60.76753 * 10 9 8 38 38 H 1.09009 * 109.52190 * 297.74948 * 11 10 9 39 39 H 1.08994 * 109.51998 * 177.56127 * 11 10 9 40 40 H 0.96999 * 120.00526 * 94.99866 * 14 12 11 41 41 H 1.09005 * 109.46836 * 60.00415 * 17 15 14 42 42 H 1.08996 * 109.47837 * 300.00838 * 17 15 14 43 43 H 0.97001 * 120.00425 * 359.71679 * 22 21 19 44 44 H 1.08994 * 109.46533 * 54.14349 * 27 8 7 45 45 H 1.09004 * 109.46340 * 294.17384 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3410 1.0673 0.0000 4 8 3.5876 0.5747 0.0006 5 7 3.5877 -0.6346 0.0067 6 6 2.3775 -1.1140 0.0006 7 6 1.9826 -2.5683 0.0010 8 7 1.8548 -3.0413 -1.3839 9 6 3.1557 -3.0326 -2.0651 10 6 2.9628 -3.3902 -3.5406 11 6 2.3201 -4.7760 -3.6451 12 6 0.9899 -4.7716 -2.8867 13 1 0.3102 -4.0555 -3.3484 14 7 0.3960 -6.1100 -2.9333 15 6 -0.3562 -6.4771 -3.9897 16 8 -0.5409 -5.6995 -4.9019 17 6 -0.9667 -7.8540 -4.0379 18 16 -1.9111 -8.0420 -5.5706 19 6 -2.4969 -9.6914 -5.3687 20 1 -2.2361 -10.2526 -4.4836 21 6 -3.2944 -10.2692 -6.3468 22 7 -3.6086 -9.5869 -7.4277 23 14 -3.9149 -12.0182 -6.1331 24 1 -5.2229 -11.9969 -5.4303 25 1 -4.0794 -12.6514 -7.4662 26 1 -2.9356 -12.7965 -5.3329 27 6 1.2400 -4.3741 -1.4302 28 1 -0.3634 0.0008 1.0276 29 1 -0.3634 0.8895 -0.5146 30 1 -0.3634 -0.8904 -0.5131 31 1 2.0575 2.1094 -0.0004 32 1 1.0284 -2.6856 0.5146 33 1 2.7461 -3.1520 0.5153 34 1 3.8154 -3.7636 -1.5975 35 1 3.6000 -2.0404 -1.9869 36 1 3.9304 -3.3989 -4.0424 37 1 2.3143 -2.6518 -4.0121 38 1 2.9861 -5.5203 -3.2082 39 1 2.1412 -5.0164 -4.6930 40 1 0.5440 -6.7321 -2.2039 41 1 -1.6301 -7.9874 -3.1833 42 1 -0.1761 -8.6035 -4.0045 43 1 -3.2861 -8.6788 -7.5388 44 1 0.2930 -4.3562 -0.8909 45 1 1.9087 -5.0989 -0.9656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267909765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:35 Heat of formation + Delta-G solvation = 17.223114 kcal Electronic energy + Delta-G solvation = -26491.302811 eV Core-core repulsion = 22637.892747 eV Total energy + Delta-G solvation = -3853.410064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.29058 -40.05700 -38.62500 -35.91025 -34.47792 -33.12572 -32.53481 -32.28235 -30.58446 -28.64576 -28.32072 -27.52542 -24.85926 -23.70950 -23.15876 -21.93111 -21.38786 -20.37377 -20.09161 -18.34612 -17.98897 -17.82048 -16.70042 -16.53341 -15.75437 -15.44348 -15.26963 -15.08383 -14.56649 -14.19184 -14.12192 -13.93191 -13.84684 -13.63480 -13.59955 -13.30363 -13.01632 -12.92201 -12.58595 -12.40695 -12.34131 -12.10475 -11.85396 -11.59729 -11.44452 -11.13825 -11.00528 -10.91606 -10.74910 -10.35384 -10.19904 -9.70520 -9.59359 -9.49448 -9.03817 -8.96711 -8.78763 -8.22862 -6.67708 -6.62917 -4.00747 1.13195 1.76701 2.83456 2.91721 2.98425 3.30930 3.37509 3.39761 3.55049 3.71482 3.86911 4.07836 4.24126 4.46181 4.53621 4.61567 4.70758 4.77591 4.79408 5.00145 5.03269 5.03646 5.07931 5.20593 5.21678 5.23182 5.29554 5.35519 5.37973 5.44086 5.49006 5.50787 5.61693 5.69107 5.76591 5.82361 5.87830 6.00300 6.09726 6.16144 6.44786 6.56521 6.69710 7.61238 7.89986 7.91651 8.49434 8.51286 9.26335 10.81075 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028957 B = 0.001862 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.724827 B =15034.925393 C =15288.173489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.182 4.182 3 C -0.069 4.069 4 O 0.100 5.900 5 N -0.361 5.361 6 C 0.027 3.973 7 C 0.135 3.865 8 N -0.528 5.528 9 C 0.054 3.946 10 C -0.112 4.112 11 C -0.133 4.133 12 C 0.153 3.847 13 H 0.098 0.902 14 N -0.734 5.734 15 C 0.533 3.467 16 O -0.515 6.515 17 C -0.131 4.131 18 S -0.115 6.115 19 C -0.608 4.608 20 H 0.066 0.934 21 C 0.035 3.965 22 N -0.884 5.884 23 Si 1.087 2.913 24 H -0.284 1.284 25 H -0.280 1.280 26 H -0.287 1.287 27 C 0.053 3.947 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.215 0.785 32 H 0.099 0.901 33 H 0.053 0.947 34 H 0.036 0.964 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.397 0.603 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.278 0.722 44 H 0.084 0.916 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.329 19.087 19.528 30.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.186 4.186 3 C -0.151 4.151 4 O 0.033 5.967 5 N -0.065 5.065 6 C -0.132 4.132 7 C 0.006 3.994 8 N -0.253 5.253 9 C -0.074 4.074 10 C -0.151 4.151 11 C -0.172 4.172 12 C 0.047 3.953 13 H 0.116 0.884 14 N -0.388 5.388 15 C 0.319 3.681 16 O -0.388 6.388 17 C -0.282 4.282 18 S 0.111 5.889 19 C -0.756 4.756 20 H 0.084 0.916 21 C -0.176 4.176 22 N -0.518 5.518 23 Si 0.913 3.087 24 H -0.211 1.211 25 H -0.205 1.205 26 H -0.213 1.213 27 C -0.075 4.075 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.232 0.768 32 H 0.117 0.883 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.230 0.770 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 13.028 18.983 17.024 28.634 hybrid contribution 0.967 -0.454 2.737 2.938 sum 13.996 18.529 19.761 30.491 Atomic orbital electron populations 1.20130 0.87194 1.03893 1.02471 1.21317 0.98831 0.91332 1.07117 1.25769 0.83098 1.01207 1.04982 1.84810 1.29191 1.15445 1.67258 1.73852 1.22425 0.91460 1.18794 1.23255 0.88528 0.98110 1.03326 1.20287 1.01739 0.87198 0.90132 1.61733 1.24335 1.25176 1.14100 1.22194 0.88985 1.01444 0.94779 1.21530 1.01178 0.97245 0.95126 1.22009 0.96162 0.96985 1.01998 1.20789 0.95072 0.84946 0.94485 0.88440 1.45974 1.53598 1.15780 1.23460 1.20258 0.77399 0.88974 0.81448 1.90707 1.58881 1.53171 1.36081 1.23318 1.03225 0.95700 1.05970 1.84828 1.62743 1.20469 1.20887 1.23731 1.40925 0.98994 1.11921 0.91594 1.26059 0.93753 1.05908 0.91862 1.70765 1.42110 1.12633 1.26334 0.83287 0.76077 0.73061 0.76252 1.21052 1.20500 1.21317 1.22272 0.99719 0.88713 0.96832 0.91029 0.90982 0.90211 0.76847 0.88307 0.92845 0.94600 0.90467 0.91074 0.90766 0.92114 0.90650 0.76960 0.88974 0.89010 0.90943 0.89734 0.94079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.37 36.01 0.37 -0.06 16 2 C -0.18 -1.35 6.32 -104.42 -0.66 -2.01 16 3 C -0.07 -0.43 12.26 29.74 0.36 -0.06 16 4 O 0.10 0.88 11.20 17.19 0.19 1.07 16 5 N -0.36 -3.72 11.23 33.42 0.38 -3.35 16 6 C 0.03 0.25 5.94 -82.10 -0.49 -0.24 16 7 C 0.13 1.09 5.47 -4.98 -0.03 1.06 16 8 N -0.53 -4.87 4.65 -236.11 -1.10 -5.96 16 9 C 0.05 0.52 5.31 -3.83 -0.02 0.50 16 10 C -0.11 -1.15 6.09 -26.65 -0.16 -1.31 16 11 C -0.13 -1.54 5.58 -26.61 -0.15 -1.69 16 12 C 0.15 1.80 2.62 -67.85 -0.18 1.62 16 13 H 0.10 1.41 7.58 -51.93 -0.39 1.02 16 14 N -0.73 -9.45 5.08 -53.73 -0.27 -9.72 16 15 C 0.53 9.70 7.81 -10.99 -0.09 9.61 16 16 O -0.51 -11.44 15.53 5.56 0.09 -11.35 16 17 C -0.13 -2.61 6.16 36.00 0.22 -2.39 16 18 S -0.12 -3.10 19.60 -107.50 -2.11 -5.21 16 19 C -0.61 -17.49 9.50 30.94 0.29 -17.20 16 20 H 0.07 1.82 7.80 -52.49 -0.41 1.41 16 21 C 0.03 1.01 5.49 -17.43 -0.10 0.91 16 22 N -0.88 -27.53 13.67 55.49 0.76 -26.77 16 23 Si 1.09 24.96 29.92 -169.99 -5.09 19.88 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 27 C 0.05 0.47 4.93 -3.83 -0.02 0.45 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.22 0.42 8.06 -52.49 -0.42 0.00 16 32 H 0.10 0.64 7.98 -51.93 -0.41 0.22 16 33 H 0.05 0.43 8.12 -51.93 -0.42 0.01 16 34 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.82 6.48 -51.93 -0.34 0.48 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.40 3.91 8.60 -40.82 -0.35 3.56 16 41 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 42 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 43 H 0.28 8.85 7.13 -40.82 -0.29 8.55 16 44 H 0.08 0.68 8.01 -51.93 -0.42 0.27 16 45 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 385.37 15.07 5.81 5.81 Total: -1.00 -35.85 385.37 -8.88 -44.73 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.90 Total: 1.68 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -0.63 Total: -10.80 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -0.24 Total: -45.81 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.28 Total: -10.28 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.09 Total: 19.88 kcal Atomic # 16 Polarization: -3.10 SS G_CDS: -2.11 Total: -5.21 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.85 -8.88 -44.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267909765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.954 kcal (2) G-P(sol) polarization free energy of solvation -35.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds