Wall clock time and date at job start Tue Mar 31 2020 22:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35451 * 128.00714 * 2 1 4 4 O 1.34035 * 106.44662 * 179.97438 * 3 2 1 5 5 N 1.20928 * 111.56667 * 359.70371 * 4 3 2 6 6 C 1.30174 * 111.60391 * 0.49220 * 5 4 3 7 7 C 1.50699 * 126.80314 * 179.79959 * 6 5 4 8 8 N 1.46902 * 109.46811 * 269.67971 * 7 6 5 9 9 C 1.46849 * 110.99983 * 66.04321 * 8 7 6 10 10 C 1.53038 * 109.52243 * 185.83707 * 9 8 7 11 11 C 1.53119 * 109.28082 * 300.82303 * 10 9 8 12 12 C 1.53118 * 109.15841 * 57.65504 * 11 10 9 13 13 H 1.08996 * 109.50190 * 62.32806 * 12 11 10 14 14 N 1.46504 * 109.49993 * 182.40666 * 12 11 10 15 15 C 1.34779 * 119.99957 * 274.99601 * 14 12 11 16 16 O 1.21281 * 119.99517 * 0.02562 * 15 14 12 17 17 C 1.50693 * 120.00222 * 179.97438 * 15 14 12 18 18 S 1.81002 * 109.47406 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00182 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99976 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99949 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99820 * 0.27912 * 21 19 18 23 23 Si 1.86800 * 119.99759 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46758 * 90.00172 * 23 21 19 25 25 H 1.48499 * 109.47026 * 210.00020 * 23 21 19 26 26 H 1.48496 * 109.47474 * 330.00056 * 23 21 19 27 27 C 1.46846 * 111.00012 * 190.25625 * 8 7 6 28 28 H 1.08997 * 109.47646 * 270.04188 * 1 2 3 29 29 H 1.09000 * 109.47467 * 30.05008 * 1 2 3 30 30 H 1.09005 * 109.47204 * 150.04767 * 1 2 3 31 31 H 1.08001 * 126.77242 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47383 * 149.67849 * 7 6 5 33 33 H 1.08994 * 109.47364 * 29.67851 * 7 6 5 34 34 H 1.09004 * 109.46207 * 65.82297 * 9 8 7 35 35 H 1.08997 * 109.46464 * 305.85601 * 9 8 7 36 36 H 1.09002 * 109.50082 * 180.88070 * 10 9 8 37 37 H 1.09002 * 109.50142 * 60.76753 * 10 9 8 38 38 H 1.09009 * 109.52190 * 297.74948 * 11 10 9 39 39 H 1.08994 * 109.51998 * 177.56127 * 11 10 9 40 40 H 0.96999 * 120.00526 * 94.99866 * 14 12 11 41 41 H 1.09005 * 109.46836 * 60.00415 * 17 15 14 42 42 H 1.08996 * 109.47837 * 300.00838 * 17 15 14 43 43 H 0.97001 * 120.00425 * 359.71679 * 22 21 19 44 44 H 1.08994 * 109.46533 * 54.14349 * 27 8 7 45 45 H 1.09004 * 109.46340 * 294.17384 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3410 1.0673 0.0000 4 8 3.5876 0.5747 0.0006 5 7 3.5877 -0.6346 0.0067 6 6 2.3775 -1.1140 0.0006 7 6 1.9826 -2.5683 0.0010 8 7 1.8548 -3.0413 -1.3839 9 6 3.1557 -3.0326 -2.0651 10 6 2.9628 -3.3902 -3.5406 11 6 2.3201 -4.7760 -3.6451 12 6 0.9899 -4.7716 -2.8867 13 1 0.3102 -4.0555 -3.3484 14 7 0.3960 -6.1100 -2.9333 15 6 -0.3562 -6.4771 -3.9897 16 8 -0.5409 -5.6995 -4.9019 17 6 -0.9667 -7.8540 -4.0379 18 16 -1.9111 -8.0420 -5.5706 19 6 -2.4969 -9.6914 -5.3687 20 1 -2.2361 -10.2526 -4.4836 21 6 -3.2944 -10.2692 -6.3468 22 7 -3.6086 -9.5869 -7.4277 23 14 -3.9149 -12.0182 -6.1331 24 1 -5.2229 -11.9969 -5.4303 25 1 -4.0794 -12.6514 -7.4662 26 1 -2.9356 -12.7965 -5.3329 27 6 1.2400 -4.3741 -1.4302 28 1 -0.3634 0.0008 1.0276 29 1 -0.3634 0.8895 -0.5146 30 1 -0.3634 -0.8904 -0.5131 31 1 2.0575 2.1094 -0.0004 32 1 1.0284 -2.6856 0.5146 33 1 2.7461 -3.1520 0.5153 34 1 3.8154 -3.7636 -1.5975 35 1 3.6000 -2.0404 -1.9869 36 1 3.9304 -3.3989 -4.0424 37 1 2.3143 -2.6518 -4.0121 38 1 2.9861 -5.5203 -3.2082 39 1 2.1412 -5.0164 -4.6930 40 1 0.5440 -6.7321 -2.2039 41 1 -1.6301 -7.9874 -3.1833 42 1 -0.1761 -8.6035 -4.0045 43 1 -3.2861 -8.6788 -7.5388 44 1 0.2930 -4.3562 -0.8909 45 1 1.9087 -5.0989 -0.9656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267909765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:34 Heat of formation + Delta-G solvation = -8.458329 kcal Electronic energy + Delta-G solvation = -26492.416442 eV Core-core repulsion = 22637.892747 eV Total energy + Delta-G solvation = -3854.523695 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.88966 -41.18408 -39.74367 -36.72501 -35.41178 -34.74306 -33.96624 -32.95012 -31.85234 -29.72128 -28.98099 -28.23028 -27.06921 -24.53612 -24.06493 -22.52158 -22.09623 -21.60430 -21.05590 -20.37187 -18.62825 -18.46546 -18.00747 -17.69065 -16.83393 -16.54682 -16.25100 -16.08063 -15.95751 -15.70404 -15.10124 -14.98255 -14.92491 -14.73184 -14.47137 -14.20515 -14.05085 -13.93044 -13.78494 -13.60745 -13.51892 -13.16216 -12.88069 -12.74375 -12.49500 -12.04634 -12.03622 -11.94080 -11.92550 -11.68430 -11.53892 -11.10203 -11.04865 -10.97189 -10.31667 -10.21101 -10.18234 -9.49239 -8.92139 -8.86383 -6.27156 0.59224 1.14358 1.23893 1.51934 1.52191 1.61740 1.79820 2.08589 2.34565 2.45085 2.88499 3.02708 3.14744 3.23544 3.52126 3.59781 3.75465 3.84745 3.92320 4.00594 4.10111 4.18027 4.22357 4.23360 4.36850 4.38563 4.45268 4.47366 4.52998 4.60498 4.77069 4.78904 4.85019 4.88437 4.93665 4.96336 5.03938 5.12672 5.20954 5.37587 5.39441 5.65072 5.84440 5.90081 6.15274 6.43250 7.06622 7.16901 7.33054 8.51339 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028957 B = 0.001862 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.724827 B =15034.925393 C =15288.173489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.199 4.199 3 C -0.057 4.057 4 O 0.086 5.914 5 N -0.391 5.391 6 C 0.014 3.986 7 C 0.137 3.863 8 N -0.537 5.537 9 C 0.062 3.938 10 C -0.107 4.107 11 C -0.128 4.128 12 C 0.154 3.846 13 H 0.068 0.932 14 N -0.706 5.706 15 C 0.537 3.463 16 O -0.562 6.562 17 C -0.109 4.109 18 S -0.197 6.197 19 C -0.612 4.612 20 H 0.076 0.924 21 C -0.021 4.021 22 N -0.914 5.914 23 Si 1.139 2.861 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.262 1.262 27 C 0.062 3.938 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.254 0.746 32 H 0.116 0.884 33 H 0.055 0.945 34 H 0.043 0.957 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.044 0.956 40 H 0.417 0.583 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.261 0.739 44 H 0.099 0.901 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.769 18.634 22.442 32.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.204 4.204 3 C -0.138 4.138 4 O 0.022 5.978 5 N -0.098 5.098 6 C -0.145 4.145 7 C 0.009 3.991 8 N -0.263 5.263 9 C -0.066 4.066 10 C -0.145 4.145 11 C -0.167 4.167 12 C 0.049 3.951 13 H 0.086 0.914 14 N -0.360 5.360 15 C 0.322 3.678 16 O -0.440 6.440 17 C -0.260 4.260 18 S 0.030 5.970 19 C -0.760 4.760 20 H 0.094 0.906 21 C -0.224 4.224 22 N -0.549 5.549 23 Si 0.957 3.043 24 H -0.192 1.192 25 H -0.205 1.205 26 H -0.187 1.187 27 C -0.066 4.066 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.270 0.730 32 H 0.134 0.866 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.254 0.746 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.072 0.928 44 H 0.117 0.883 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.511 18.552 20.009 30.449 hybrid contribution 0.914 -0.170 1.909 2.123 sum 14.425 18.382 21.918 32.037 Atomic orbital electron populations 1.20144 0.85947 1.03892 1.03275 1.21642 0.99789 0.91197 1.07749 1.26521 0.81827 1.02702 1.02761 1.84765 1.30518 1.15114 1.67423 1.73843 1.23366 0.92194 1.20352 1.23565 0.88721 0.98993 1.03226 1.20345 1.02698 0.86760 0.89269 1.61672 1.24068 1.25418 1.15106 1.22067 0.89395 1.01041 0.94117 1.21473 1.01195 0.95926 0.95917 1.21938 0.96401 0.98211 1.00123 1.20825 0.94257 0.83346 0.96689 0.91350 1.45665 1.51471 1.16605 1.22237 1.19984 0.77808 0.87916 0.82063 1.90703 1.60938 1.54169 1.38213 1.23222 1.03101 0.97490 1.02223 1.85088 1.64704 1.20629 1.26579 1.24057 1.40477 0.99364 1.12105 0.90619 1.27843 0.93636 1.09788 0.91104 1.70887 1.43817 1.12208 1.27997 0.82681 0.76830 0.68070 0.76720 1.19223 1.20544 1.18672 1.22178 1.00973 0.89071 0.94366 0.89781 0.89829 0.91355 0.72999 0.86572 0.92663 0.93925 0.91417 0.90060 0.92289 0.90564 0.93757 0.74566 0.86793 0.87070 0.92844 0.88292 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.37 71.24 0.74 0.05 16 2 C -0.20 -2.64 6.32 -19.73 -0.12 -2.77 16 3 C -0.06 -0.60 12.26 67.18 0.82 0.22 16 4 O 0.09 1.45 11.20 71.67 0.80 2.25 16 5 N -0.39 -7.83 11.23 -49.55 -0.56 -8.38 16 6 C 0.01 0.23 5.94 43.58 0.26 0.49 16 7 C 0.14 1.96 5.47 85.56 0.47 2.43 16 8 N -0.54 -9.03 4.65 -900.92 -4.19 -13.22 16 9 C 0.06 1.12 5.31 86.33 0.46 1.58 16 10 C -0.11 -2.14 6.09 30.65 0.19 -1.96 16 11 C -0.13 -2.89 5.58 30.67 0.17 -2.72 16 12 C 0.15 3.47 2.62 45.04 0.12 3.58 16 13 H 0.07 2.01 7.58 -2.39 -0.02 1.99 16 14 N -0.71 -16.84 5.08 -442.29 -2.25 -19.09 16 15 C 0.54 19.21 7.81 87.65 0.68 19.90 16 16 O -0.56 -25.69 15.53 -3.03 -0.05 -25.73 16 17 C -0.11 -4.21 6.16 71.23 0.44 -3.77 16 18 S -0.20 -10.79 19.60 -56.49 -1.11 -11.89 16 19 C -0.61 -35.16 9.50 67.96 0.65 -34.51 16 20 H 0.08 4.06 7.80 -2.91 -0.02 4.04 16 21 C -0.02 -1.20 5.49 84.86 0.47 -0.73 16 22 N -0.91 -58.15 13.67 21.65 0.30 -57.85 16 23 Si 1.14 49.19 29.92 68.60 2.05 51.24 16 24 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 25 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 26 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 27 C 0.06 0.95 4.93 86.33 0.43 1.37 16 28 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.25 0.21 8.06 -2.91 -0.02 0.19 16 32 H 0.12 1.21 7.98 -2.39 -0.02 1.19 16 33 H 0.06 0.77 8.12 -2.39 -0.02 0.75 16 34 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 1.40 6.48 -2.39 -0.02 1.39 16 36 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.42 6.77 8.60 -92.71 -0.80 5.97 16 41 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 42 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 43 H 0.26 17.26 7.13 -92.71 -0.66 16.60 16 44 H 0.10 1.27 8.01 -2.39 -0.02 1.26 16 45 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -81.49 385.37 1.08 -80.41 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.31 Total: 19.09 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: 5.76 Total: -16.83 kcal Atomic # 7 Polarization: -91.85 SS G_CDS: -6.69 Total: -98.54 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: 0.76 Total: -23.48 kcal Atomic # 14 Polarization: 49.19 SS G_CDS: 2.05 Total: 51.24 kcal Atomic # 16 Polarization: -10.79 SS G_CDS: -1.11 Total: -11.89 kcal Total: -81.49 1.08 -80.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267909765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.955 kcal (2) G-P(sol) polarization free energy of solvation -81.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds