Wall clock time and date at job start Tue Mar 31 2020 22:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32774 * 123.45452 * 2 1 4 4 S 1.75505 * 110.57585 * 179.97438 * 3 2 1 5 5 C 1.70446 * 92.44378 * 359.97438 * 4 3 2 6 6 C 1.36008 * 110.81990 * 0.02562 * 5 4 3 7 7 C 1.47183 * 123.46283 * 180.02562 * 6 5 4 8 8 O 1.21642 * 120.00401 * 179.97438 * 7 6 5 9 9 N 1.34781 * 119.99922 * 359.97438 * 7 6 5 10 10 C 1.46501 * 120.00004 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47032 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47324 * 304.99747 * 11 10 9 13 13 C 1.53000 * 109.47330 * 65.00291 * 11 10 9 14 14 C 1.53001 * 109.47228 * 184.99845 * 11 10 9 15 15 N 1.46895 * 109.47710 * 174.99942 * 14 11 10 16 16 C 1.46893 * 111.00527 * 179.97438 * 15 14 11 17 17 C 1.50701 * 109.47388 * 180.02562 * 16 15 14 18 18 O 1.21290 * 119.99884 * 359.97438 * 17 16 15 19 19 N 1.34782 * 120.00244 * 180.02562 * 17 16 15 20 20 C 1.37089 * 120.00101 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99701 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00119 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99720 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00247 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47022 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46940 * 119.99872 * 24 22 20 27 27 H 1.48493 * 109.47595 * 240.00486 * 24 22 20 28 28 H 1.09007 * 109.46840 * 89.98188 * 1 2 3 29 29 H 1.08998 * 109.46601 * 209.97180 * 1 2 3 30 30 H 1.08992 * 109.47932 * 329.97874 * 1 2 3 31 31 H 1.08007 * 124.71075 * 359.73332 * 3 2 1 32 32 H 1.08005 * 124.58969 * 180.02562 * 5 4 3 33 33 H 0.97000 * 119.99834 * 359.97438 * 9 7 6 34 34 H 1.08999 * 109.47251 * 299.99866 * 10 9 7 35 35 H 1.09001 * 109.47061 * 59.99359 * 10 9 7 36 36 H 1.09005 * 109.46763 * 300.00047 * 13 11 10 37 37 H 1.08998 * 109.47362 * 59.99478 * 13 11 10 38 38 H 1.08991 * 109.47071 * 179.97438 * 13 11 10 39 39 H 1.09007 * 109.47261 * 295.00141 * 14 11 10 40 40 H 1.09003 * 109.47212 * 54.99805 * 14 11 10 41 41 H 1.00905 * 110.99831 * 56.04514 * 15 14 11 42 42 H 1.09003 * 109.47465 * 300.00221 * 16 15 14 43 43 H 1.09005 * 109.47175 * 60.00127 * 16 15 14 44 44 H 0.97000 * 119.99224 * 359.97438 * 19 17 16 45 45 H 0.97001 * 119.99530 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1078 0.0000 4 16 3.9499 0.7166 0.0007 5 6 3.6411 -0.9597 0.0018 6 6 2.3033 -1.2049 0.0010 7 6 1.7264 -2.5589 0.0022 8 8 0.5189 -2.7056 0.0019 9 7 2.5361 -3.6364 0.0036 10 6 1.9619 -4.9842 0.0042 11 6 3.0890 -6.0187 0.0052 12 1 3.7555 -5.8307 -0.8365 13 6 3.8765 -5.9138 1.3127 14 6 2.4931 -7.4224 -0.1199 15 7 3.5775 -8.4060 -0.2394 16 6 3.0417 -9.7683 -0.3610 17 6 4.1810 -10.7475 -0.4806 18 8 5.3266 -10.3495 -0.4664 19 7 3.9268 -12.0653 -0.6044 20 6 4.9632 -12.9560 -0.7137 21 1 5.9834 -12.6016 -0.7011 22 6 4.7012 -14.3146 -0.8408 23 7 3.4600 -14.7457 -0.8567 24 14 6.1134 -15.5282 -0.9905 25 1 7.4036 -14.7942 -0.9464 26 1 6.0561 -16.4955 0.1348 27 1 6.0033 -16.2596 -2.2781 28 1 -0.3633 0.0003 -1.0277 29 1 -0.3632 -0.8903 0.5134 30 1 -0.3635 0.8897 0.5141 31 1 1.8373 2.1103 -0.0041 32 1 4.4045 -1.7237 0.0029 33 1 3.4990 -3.5195 0.0035 34 1 1.3461 -5.1164 0.8938 35 1 1.3473 -5.1177 -0.8861 36 1 4.3011 -4.9138 1.4019 37 1 3.2100 -6.1018 2.1544 38 1 4.6792 -6.6511 1.3136 39 1 1.8972 -7.6443 0.7655 40 1 1.8596 -7.4706 -1.0056 41 1 4.2157 -8.3370 0.5392 42 1 2.4498 -10.0063 0.5229 43 1 2.4118 -9.8331 -1.2483 44 1 3.0106 -12.3834 -0.6161 45 1 3.2771 -15.6942 -0.9450 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267985887.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:05 Heat of formation + Delta-G solvation = -53.315271 kcal Electronic energy + Delta-G solvation = -25489.329308 eV Core-core repulsion = 21632.860470 eV Total energy + Delta-G solvation = -3856.468838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -40.34552 -38.46310 -37.81297 -36.99428 -34.97540 -33.89317 -32.65910 -31.28004 -31.09156 -28.20085 -27.43013 -26.87495 -25.12706 -24.29850 -23.06939 -21.12834 -20.60738 -19.39556 -18.99202 -18.18005 -17.89245 -17.26194 -16.54499 -15.83278 -15.73148 -15.51551 -14.99840 -14.63364 -14.48378 -14.28285 -13.91518 -13.80930 -13.71762 -13.57555 -13.36082 -13.07601 -12.93503 -12.79395 -12.65314 -12.41586 -12.22535 -12.05773 -11.60010 -11.55194 -11.30883 -11.20945 -11.09911 -10.99047 -10.92091 -10.34871 -10.23116 -10.07434 -9.52691 -9.42901 -9.29669 -8.75201 -8.47415 -8.07678 -7.96527 -6.42329 -3.83159 0.32620 1.10770 1.48140 1.59521 2.85560 3.04183 3.15945 3.26542 3.33729 3.90235 4.08272 4.20503 4.29946 4.53651 4.68954 4.73542 4.77093 4.83296 4.90609 5.12409 5.17662 5.24958 5.25425 5.33577 5.41376 5.45146 5.52046 5.57888 5.60919 5.69746 5.78445 5.83552 5.85437 5.97906 6.01044 6.09677 6.16689 6.23058 6.26618 7.18250 7.19130 7.54842 7.64393 7.92703 8.05949 8.60655 9.17338 9.53824 10.05106 10.75464 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032678 B = 0.001482 C = 0.001431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.639385 B =18892.200058 C =19567.873555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.050 4.050 3 C -0.247 4.247 4 S 0.187 5.813 5 C -0.211 4.211 6 C -0.152 4.152 7 C 0.576 3.424 8 O -0.532 6.532 9 N -0.721 5.721 10 C 0.126 3.874 11 C -0.102 4.102 12 H 0.089 0.911 13 C -0.153 4.153 14 C 0.066 3.934 15 N -0.668 5.668 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.169 0.831 32 H 0.170 0.830 33 H 0.399 0.601 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.031 0.969 40 H 0.074 0.926 41 H 0.349 0.651 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.417 30.784 3.400 31.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.061 4.061 3 C -0.381 4.381 4 S 0.454 5.546 5 C -0.350 4.350 6 C -0.171 4.171 7 C 0.362 3.638 8 O -0.411 6.411 9 N -0.373 5.373 10 C 0.002 3.998 11 C -0.121 4.121 12 H 0.107 0.893 13 C -0.210 4.210 14 C -0.064 4.064 15 N -0.302 5.302 16 C -0.083 4.083 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.186 0.814 32 H 0.188 0.812 33 H 0.234 0.766 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.049 0.951 40 H 0.093 0.907 41 H 0.169 0.831 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.226 0.774 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.163 31.687 2.719 31.960 hybrid contribution -0.944 -1.968 0.763 2.312 sum -4.107 29.718 3.482 30.202 Atomic orbital electron populations 1.20667 0.88573 1.03756 1.03006 1.19884 0.97624 0.89817 0.98809 1.25342 0.96400 1.02724 1.13663 1.83083 1.05644 0.96646 1.69229 1.25678 0.99628 1.03051 1.06601 1.20183 0.92081 0.94394 1.10416 1.17571 0.86342 0.83539 0.76372 1.90757 1.14020 1.86444 1.49841 1.45871 1.10055 1.05975 1.75423 1.21408 0.95807 0.79827 1.02727 1.21370 0.96873 0.94124 0.99751 0.89279 1.21904 1.00620 1.01868 0.96608 1.21878 0.93393 0.90514 1.00613 1.60097 1.16612 1.02794 1.50677 1.21674 0.96569 0.88734 1.01287 1.19814 0.89850 0.83214 0.84514 1.90516 1.22235 1.78295 1.55801 1.41871 1.09775 1.04653 1.63731 1.19758 0.89503 0.86766 1.46885 0.87859 1.25267 0.97504 0.97859 0.97339 1.69622 1.18296 1.15968 1.50378 0.85794 0.80916 0.79856 0.77737 1.19226 1.20781 1.20735 0.90956 0.88900 0.91882 0.81392 0.81238 0.76604 0.91158 0.90982 0.92880 0.92565 0.91351 0.95128 0.90710 0.83084 0.93842 0.89531 0.77443 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 9.55 36.01 0.34 -0.50 16 2 C -0.05 -0.44 6.01 -104.06 -0.63 -1.06 16 3 C -0.25 -1.63 10.91 28.86 0.31 -1.32 16 4 S 0.19 1.04 23.02 -107.50 -2.48 -1.44 16 5 C -0.21 -1.41 10.38 29.93 0.31 -1.09 16 6 C -0.15 -1.38 5.98 -104.63 -0.63 -2.01 16 7 C 0.58 6.21 7.79 -12.63 -0.10 6.11 16 8 O -0.53 -7.33 14.21 5.24 0.07 -7.26 16 9 N -0.72 -6.24 5.25 -61.46 -0.32 -6.57 16 10 C 0.13 1.17 5.06 -4.04 -0.02 1.15 16 11 C -0.10 -0.96 2.63 -90.62 -0.24 -1.20 16 12 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 13 C -0.15 -1.36 8.84 37.16 0.33 -1.03 16 14 C 0.07 0.77 5.14 -3.83 -0.02 0.75 16 15 N -0.67 -10.43 6.12 -115.06 -0.70 -11.14 16 16 C 0.05 0.88 6.17 -4.98 -0.03 0.84 16 17 C 0.44 10.39 7.82 -10.98 -0.09 10.30 16 18 O -0.58 -15.80 15.78 5.55 0.09 -15.72 16 19 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 20 C -0.30 -8.37 9.68 -14.94 -0.14 -8.51 16 21 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 24 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.09 0.96 6.02 -51.93 -0.31 0.65 16 30 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 31 H 0.17 0.75 8.06 -52.48 -0.42 0.32 16 32 H 0.17 0.73 7.01 -52.48 -0.37 0.36 16 33 H 0.40 2.57 6.15 -40.82 -0.25 2.32 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.39 7.18 -51.93 -0.37 0.01 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.70 6.68 -51.93 -0.35 0.35 16 39 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.35 5.58 6.68 -39.29 -0.26 5.32 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 44 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 387.61 15.07 5.84 5.84 Total: -1.00 -33.34 387.61 -8.94 -42.28 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -6.40 Total: 13.24 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -0.69 Total: 2.92 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.36 Total: -55.88 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: 0.16 Total: -22.97 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.48 Total: -1.44 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.34 -8.94 -42.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267985887.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.033 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds