Wall clock time and date at job start Tue Mar 31 2020 22:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35446 * 128.00505 * 2 1 4 4 O 1.34044 * 106.44743 * 180.02562 * 3 2 1 5 5 N 1.20918 * 111.56370 * 359.97438 * 4 3 2 6 6 C 1.30174 * 111.60837 * 359.97438 * 5 4 3 7 7 C 1.50702 * 126.80448 * 179.73357 * 6 5 4 8 8 N 1.46903 * 109.47012 * 90.03063 * 7 6 5 9 9 C 1.46897 * 111.00229 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.47176 * 179.97438 * 9 8 7 11 11 H 1.08994 * 109.46986 * 64.99822 * 10 9 8 12 12 N 1.46500 * 109.46704 * 305.00014 * 10 9 8 13 13 C 1.34784 * 119.99599 * 155.00171 * 12 10 9 14 14 O 1.21279 * 120.00016 * 359.97438 * 13 12 10 15 15 C 1.50693 * 119.99924 * 179.97438 * 13 12 10 16 16 S 1.80996 * 109.47123 * 179.97438 * 15 13 12 17 17 C 1.76206 * 100.00298 * 179.97438 * 16 15 13 18 18 H 1.08006 * 119.99462 * 359.97438 * 17 16 15 19 19 C 1.38797 * 120.00456 * 180.02562 * 17 16 15 20 20 N 1.31632 * 119.99720 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00052 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47289 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.46863 * 119.99889 * 21 19 17 24 24 H 1.48507 * 109.46748 * 239.99324 * 21 19 17 25 25 C 1.52995 * 109.46840 * 184.99950 * 10 9 8 26 26 C 1.52996 * 117.49933 * 248.74246 * 25 10 9 27 27 C 1.53005 * 117.49826 * 180.08624 * 25 10 9 28 28 H 1.09000 * 109.46935 * 269.97368 * 1 2 3 29 29 H 1.08996 * 109.47443 * 29.97282 * 1 2 3 30 30 H 1.09001 * 109.47282 * 149.97957 * 1 2 3 31 31 H 1.08004 * 126.77907 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.47361 * 210.02423 * 7 6 5 33 33 H 1.08995 * 109.47063 * 330.03017 * 7 6 5 34 34 H 1.00904 * 110.99886 * 56.03880 * 8 7 6 35 35 H 1.09000 * 109.46872 * 299.99816 * 9 8 7 36 36 H 1.09005 * 109.46930 * 59.99660 * 9 8 7 37 37 H 0.96998 * 120.00828 * 334.99806 * 12 10 9 38 38 H 1.08999 * 109.47190 * 299.99903 * 15 13 12 39 39 H 1.09001 * 109.47444 * 59.99888 * 15 13 12 40 40 H 0.96998 * 120.00260 * 180.02562 * 20 19 17 41 41 H 1.09005 * 115.55282 * 34.42050 * 25 10 9 42 42 H 1.09002 * 117.49854 * 0.02562 * 26 25 10 43 43 H 1.09003 * 117.49977 * 145.01780 * 26 25 10 44 44 H 1.09001 * 117.49963 * 214.98521 * 27 25 10 45 45 H 1.09004 * 117.49605 * 359.97438 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3410 1.0673 0.0000 4 8 3.5877 0.5747 -0.0006 5 7 3.5878 -0.6344 -0.0004 6 6 2.3776 -1.1140 0.0008 7 6 1.9827 -2.5683 -0.0042 8 7 1.8574 -3.0465 1.3792 9 6 1.4733 -4.4639 1.4136 10 6 1.3536 -4.9248 2.8676 11 1 0.5347 -4.3923 3.3512 12 7 2.6052 -4.6414 3.5743 13 6 2.6014 -4.4768 4.9120 14 8 1.5618 -4.5628 5.5306 15 6 3.8889 -4.1858 5.6390 16 16 3.5570 -4.0182 7.4104 17 6 5.1860 -3.6921 7.9975 18 1 6.0120 -3.6500 7.3029 19 6 5.4079 -3.4903 9.3527 20 7 4.4013 -3.5421 10.1993 21 14 7.1348 -3.1439 9.9749 22 1 8.0813 -3.1378 8.8308 23 1 7.1622 -1.8203 10.6478 24 1 7.5336 -4.1988 10.9412 25 6 1.0763 -6.4289 2.9046 26 6 -0.3047 -6.8811 3.3835 27 6 0.9205 -7.0850 4.2781 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5141 31 1 2.0576 2.1094 0.0004 32 1 1.0275 -2.6837 -0.5163 33 1 2.7453 -3.1500 -0.5220 34 1 1.2029 -2.4813 1.8992 35 1 0.5147 -4.5928 0.9111 36 1 2.2327 -5.0585 0.9056 37 1 3.4367 -4.5722 3.0795 38 1 4.5909 -5.0037 5.4763 39 1 4.3181 -3.2580 5.2608 40 1 4.5562 -3.4008 11.1463 41 1 1.5530 -7.0144 2.1184 42 1 -1.0158 -6.1069 3.6718 43 1 -0.7365 -7.7641 2.9125 44 1 1.2944 -8.1021 4.3953 45 1 1.0161 -6.4450 5.1553 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269043014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:39 Heat of formation + Delta-G solvation = 48.037336 kcal Electronic energy + Delta-G solvation = -26494.732561 eV Core-core repulsion = 22642.658702 eV Total energy + Delta-G solvation = -3852.073859 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.18379 -39.71936 -37.49042 -36.67300 -34.93164 -33.55079 -32.41259 -32.37417 -30.14561 -28.57171 -28.19087 -25.94940 -25.39748 -22.68135 -22.17199 -21.90194 -21.57803 -20.70497 -20.09039 -17.89276 -17.80378 -17.65573 -16.63388 -16.37712 -15.86308 -15.39044 -15.13674 -14.76017 -14.71489 -14.55951 -14.28466 -13.79275 -13.77414 -13.66983 -13.49645 -13.00485 -12.82937 -12.66935 -12.42186 -12.35227 -12.03663 -11.79179 -11.45222 -11.32115 -11.18014 -11.02611 -10.95805 -10.71633 -10.35165 -10.29488 -10.09234 -9.73840 -9.65494 -9.25594 -9.02667 -8.81581 -8.64997 -8.16879 -6.43350 -6.17231 -3.86449 1.24523 1.86294 3.00389 3.09326 3.18533 3.25053 3.31528 3.36683 3.64126 3.75031 3.94586 4.08905 4.23981 4.25581 4.50995 4.55141 4.72205 4.85611 4.95182 5.06000 5.10203 5.13934 5.16770 5.18130 5.21002 5.27460 5.30607 5.34756 5.40021 5.41375 5.42943 5.70373 5.71795 5.80688 5.87118 6.00333 6.07922 6.18508 6.25817 6.51158 6.56192 6.80146 6.97414 7.65188 7.90679 8.03491 8.40727 8.76150 9.28623 10.90257 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008590 B = 0.002946 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3258.898205 B = 9503.220696 C =12015.433632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.200 4.200 3 C -0.064 4.064 4 O 0.104 5.896 5 N -0.343 5.343 6 C 0.018 3.982 7 C 0.140 3.860 8 N -0.679 5.679 9 C 0.057 3.943 10 C 0.182 3.818 11 H 0.086 0.914 12 N -0.716 5.716 13 C 0.537 3.463 14 O -0.523 6.523 15 C -0.152 4.152 16 S -0.061 6.061 17 C -0.533 4.533 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.917 3.083 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.173 4.173 26 C -0.174 4.174 27 C -0.176 4.176 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.215 0.785 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.347 0.653 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.401 0.599 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.267 0.733 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.522 3.009 -25.644 27.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.205 4.205 3 C -0.145 4.145 4 O 0.036 5.964 5 N -0.045 5.045 6 C -0.142 4.142 7 C 0.011 3.989 8 N -0.311 5.311 9 C -0.073 4.073 10 C 0.076 3.924 11 H 0.104 0.896 12 N -0.369 5.369 13 C 0.324 3.676 14 O -0.398 6.398 15 C -0.303 4.303 16 S 0.166 5.834 17 C -0.681 4.681 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.504 5.504 21 Si 0.744 3.256 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.193 4.193 26 C -0.212 4.212 27 C -0.213 4.213 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.231 0.769 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.166 0.834 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.235 0.765 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.119 0.881 42 H 0.111 0.889 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.405 2.196 -24.384 26.227 hybrid contribution 0.991 0.627 -0.832 1.438 sum -8.414 2.823 -25.217 26.733 Atomic orbital electron populations 1.20109 0.87443 1.03057 1.02933 1.21347 0.98634 0.91817 1.08675 1.25776 0.83239 1.01176 1.04318 1.84859 1.29064 1.15631 1.66850 1.73879 1.22275 0.91094 1.17290 1.23287 0.88630 0.97940 1.04311 1.20108 1.00536 0.87390 0.90885 1.60313 1.55723 1.03257 1.11831 1.22237 1.00061 0.88718 0.96281 1.20357 0.88581 0.92553 0.90920 0.89628 1.45840 1.10189 1.73753 1.07095 1.20207 0.90732 0.75121 0.81554 1.90610 1.33292 1.49425 1.66523 1.23516 0.97587 1.04438 1.04768 1.85302 1.13288 1.93041 0.91769 1.22926 0.93814 1.55965 0.95416 0.90948 1.24982 0.98106 0.94807 0.95713 1.70030 1.30579 1.46671 1.03127 0.86134 0.82672 0.78042 0.78765 1.19603 1.20592 1.20613 1.22622 1.01163 0.95811 0.99679 1.22910 0.90816 1.02896 1.04532 1.23339 1.00636 1.01950 0.95342 0.90590 0.90926 0.91236 0.76865 0.92914 0.89197 0.83394 0.93435 0.90122 0.76470 0.89446 0.89351 0.92326 0.88131 0.88856 0.89284 0.89519 0.85675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.37 36.01 0.37 -0.04 16 2 C -0.20 -1.61 6.32 -104.42 -0.66 -2.27 16 3 C -0.06 -0.47 12.26 29.74 0.36 -0.11 16 4 O 0.10 1.11 11.20 17.17 0.19 1.30 16 5 N -0.34 -4.23 12.07 33.42 0.40 -3.82 16 6 C 0.02 0.18 6.84 -82.10 -0.56 -0.38 16 7 C 0.14 1.16 6.19 -4.97 -0.03 1.13 16 8 N -0.68 -6.29 6.21 -115.05 -0.71 -7.01 16 9 C 0.06 0.47 5.23 -3.82 -0.02 0.45 16 10 C 0.18 2.06 2.51 -67.93 -0.17 1.89 16 11 H 0.09 1.14 7.33 -51.93 -0.38 0.76 16 12 N -0.72 -9.79 4.78 -53.81 -0.26 -10.05 16 13 C 0.54 9.98 7.18 -10.99 -0.08 9.90 16 14 O -0.52 -11.31 12.89 5.56 0.07 -11.24 16 15 C -0.15 -3.18 6.16 36.00 0.22 -2.96 16 16 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 17 C -0.53 -15.49 9.50 30.94 0.29 -15.20 16 18 H 0.07 2.02 7.80 -52.48 -0.41 1.61 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.49 13.22 55.49 0.73 -25.76 16 21 Si 0.92 21.84 29.55 -169.99 -5.02 16.82 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C -0.17 -1.92 5.36 -90.62 -0.49 -2.40 16 26 C -0.17 -1.92 10.18 -26.70 -0.27 -2.19 16 27 C -0.18 -2.43 9.74 -26.69 -0.26 -2.69 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.32 7.65 -51.93 -0.40 -0.08 16 31 H 0.21 0.67 8.06 -52.48 -0.42 0.25 16 32 H 0.05 0.33 7.65 -51.93 -0.40 -0.07 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.35 3.38 8.72 -39.29 -0.34 3.04 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.40 4.91 8.60 -40.82 -0.35 4.56 16 38 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 39 H 0.09 1.78 8.14 -51.91 -0.42 1.35 16 40 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.10 0.97 8.11 -51.93 -0.42 0.55 16 42 H 0.09 1.06 8.05 -51.93 -0.42 0.64 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.13 2.22 5.02 -51.93 -0.26 1.96 16 LS Contribution 393.75 15.07 5.93 5.93 Total: -1.00 -35.32 393.75 -9.00 -44.32 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -6.74 Total: 6.24 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -1.38 Total: -12.86 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.16 Total: -46.64 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.26 Total: -9.93 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.32 -9.00 -44.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269043014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.354 kcal (2) G-P(sol) polarization free energy of solvation -35.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds