Wall clock time and date at job start Tue Mar 31 2020 22:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35446 * 128.00505 * 2 1 4 4 O 1.34044 * 106.44743 * 180.02562 * 3 2 1 5 5 N 1.20918 * 111.56370 * 359.97438 * 4 3 2 6 6 C 1.30174 * 111.60837 * 359.97438 * 5 4 3 7 7 C 1.50702 * 126.80448 * 179.73357 * 6 5 4 8 8 N 1.46903 * 109.47012 * 90.03063 * 7 6 5 9 9 C 1.46897 * 111.00229 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.47176 * 179.97438 * 9 8 7 11 11 H 1.08994 * 109.46986 * 64.99822 * 10 9 8 12 12 N 1.46500 * 109.46704 * 305.00014 * 10 9 8 13 13 C 1.34784 * 119.99599 * 155.00171 * 12 10 9 14 14 O 1.21279 * 120.00016 * 359.97438 * 13 12 10 15 15 C 1.50693 * 119.99924 * 179.97438 * 13 12 10 16 16 S 1.80996 * 109.47123 * 179.97438 * 15 13 12 17 17 C 1.76206 * 100.00298 * 179.97438 * 16 15 13 18 18 H 1.08006 * 119.99462 * 359.97438 * 17 16 15 19 19 C 1.38797 * 120.00456 * 180.02562 * 17 16 15 20 20 N 1.31632 * 119.99720 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00052 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47289 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.46863 * 119.99889 * 21 19 17 24 24 H 1.48507 * 109.46748 * 239.99324 * 21 19 17 25 25 C 1.52995 * 109.46840 * 184.99950 * 10 9 8 26 26 C 1.52996 * 117.49933 * 248.74246 * 25 10 9 27 27 C 1.53005 * 117.49826 * 180.08624 * 25 10 9 28 28 H 1.09000 * 109.46935 * 269.97368 * 1 2 3 29 29 H 1.08996 * 109.47443 * 29.97282 * 1 2 3 30 30 H 1.09001 * 109.47282 * 149.97957 * 1 2 3 31 31 H 1.08004 * 126.77907 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.47361 * 210.02423 * 7 6 5 33 33 H 1.08995 * 109.47063 * 330.03017 * 7 6 5 34 34 H 1.00904 * 110.99886 * 56.03880 * 8 7 6 35 35 H 1.09000 * 109.46872 * 299.99816 * 9 8 7 36 36 H 1.09005 * 109.46930 * 59.99660 * 9 8 7 37 37 H 0.96998 * 120.00828 * 334.99806 * 12 10 9 38 38 H 1.08999 * 109.47190 * 299.99903 * 15 13 12 39 39 H 1.09001 * 109.47444 * 59.99888 * 15 13 12 40 40 H 0.96998 * 120.00260 * 180.02562 * 20 19 17 41 41 H 1.09005 * 115.55282 * 34.42050 * 25 10 9 42 42 H 1.09002 * 117.49854 * 0.02562 * 26 25 10 43 43 H 1.09003 * 117.49977 * 145.01780 * 26 25 10 44 44 H 1.09001 * 117.49963 * 214.98521 * 27 25 10 45 45 H 1.09004 * 117.49605 * 359.97438 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3410 1.0673 0.0000 4 8 3.5877 0.5747 -0.0006 5 7 3.5878 -0.6344 -0.0004 6 6 2.3776 -1.1140 0.0008 7 6 1.9827 -2.5683 -0.0042 8 7 1.8574 -3.0465 1.3792 9 6 1.4733 -4.4639 1.4136 10 6 1.3536 -4.9248 2.8676 11 1 0.5347 -4.3923 3.3512 12 7 2.6052 -4.6414 3.5743 13 6 2.6014 -4.4768 4.9120 14 8 1.5618 -4.5628 5.5306 15 6 3.8889 -4.1858 5.6390 16 16 3.5570 -4.0182 7.4104 17 6 5.1860 -3.6921 7.9975 18 1 6.0120 -3.6500 7.3029 19 6 5.4079 -3.4903 9.3527 20 7 4.4013 -3.5421 10.1993 21 14 7.1348 -3.1439 9.9749 22 1 8.0813 -3.1378 8.8308 23 1 7.1622 -1.8203 10.6478 24 1 7.5336 -4.1988 10.9412 25 6 1.0763 -6.4289 2.9046 26 6 -0.3047 -6.8811 3.3835 27 6 0.9205 -7.0850 4.2781 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5141 31 1 2.0576 2.1094 0.0004 32 1 1.0275 -2.6837 -0.5163 33 1 2.7453 -3.1500 -0.5220 34 1 1.2029 -2.4813 1.8992 35 1 0.5147 -4.5928 0.9111 36 1 2.2327 -5.0585 0.9056 37 1 3.4367 -4.5722 3.0795 38 1 4.5909 -5.0037 5.4763 39 1 4.3181 -3.2580 5.2608 40 1 4.5562 -3.4008 11.1463 41 1 1.5530 -7.0144 2.1184 42 1 -1.0158 -6.1069 3.6718 43 1 -0.7365 -7.7641 2.9125 44 1 1.2944 -8.1021 4.3953 45 1 1.0161 -6.4450 5.1553 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269043014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:39 Heat of formation + Delta-G solvation = 22.735365 kcal Electronic energy + Delta-G solvation = -26495.829737 eV Core-core repulsion = 22642.658702 eV Total energy + Delta-G solvation = -3853.171035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.87759 -40.98069 -38.56508 -37.48626 -35.71042 -34.62649 -34.56008 -33.14769 -31.42601 -29.56445 -28.91507 -27.67163 -26.70795 -23.47790 -23.13966 -22.53808 -22.27486 -21.92740 -21.21450 -19.80945 -18.53916 -18.45852 -17.90344 -17.44690 -17.00788 -16.88868 -16.47031 -16.14463 -15.82304 -15.57095 -15.22442 -14.94970 -14.83193 -14.58304 -14.35508 -14.09159 -14.06531 -13.54909 -13.38401 -13.16559 -13.14189 -12.99215 -12.92433 -12.79382 -12.60093 -12.33091 -12.24080 -11.95142 -11.71425 -11.28258 -11.16457 -11.15964 -10.95731 -10.74478 -10.27535 -10.24168 -9.89569 -9.46837 -8.65086 -8.35599 -6.12446 0.61994 1.21606 1.27505 1.39732 1.46389 1.58499 1.70001 2.25105 2.30953 2.45810 2.97486 2.98197 3.07973 3.29394 3.34758 3.61874 3.74501 3.96528 4.01687 4.05079 4.15593 4.19570 4.27723 4.29446 4.32369 4.40947 4.48435 4.52071 4.64632 4.69858 4.77397 4.83787 4.84174 4.91287 4.93982 4.98418 5.07648 5.29040 5.35248 5.40989 5.41885 5.60672 5.89823 6.19197 6.24026 6.63125 7.05885 7.36833 7.37132 8.73811 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008590 B = 0.002946 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3258.898205 B = 9503.220696 C =12015.433632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.211 4.211 3 C -0.060 4.060 4 O 0.083 5.917 5 N -0.387 5.387 6 C 0.007 3.993 7 C 0.144 3.856 8 N -0.694 5.694 9 C 0.068 3.932 10 C 0.181 3.819 11 H 0.065 0.935 12 N -0.693 5.693 13 C 0.539 3.461 14 O -0.557 6.557 15 C -0.130 4.130 16 S -0.141 6.141 17 C -0.548 4.548 18 H 0.077 0.923 19 C 0.015 3.985 20 N -0.910 5.910 21 Si 0.997 3.003 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.272 1.272 25 C -0.156 4.156 26 C -0.156 4.156 27 C -0.209 4.209 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.253 0.747 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.343 0.657 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.411 0.589 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.271 0.729 41 H 0.128 0.872 42 H 0.086 0.914 43 H 0.115 0.885 44 H 0.091 0.909 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.369 3.050 -28.256 29.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.215 4.215 3 C -0.140 4.140 4 O 0.018 5.982 5 N -0.093 5.093 6 C -0.152 4.152 7 C 0.015 3.985 8 N -0.326 5.326 9 C -0.061 4.061 10 C 0.076 3.924 11 H 0.083 0.917 12 N -0.345 5.345 13 C 0.325 3.675 14 O -0.436 6.436 15 C -0.282 4.282 16 S 0.086 5.914 17 C -0.696 4.696 18 H 0.096 0.904 19 C -0.190 4.190 20 N -0.546 5.546 21 Si 0.819 3.181 22 H -0.184 1.184 23 H -0.197 1.197 24 H -0.197 1.197 25 C -0.176 4.176 26 C -0.193 4.193 27 C -0.246 4.246 28 H 0.092 0.908 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.269 0.731 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.161 0.839 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.248 0.752 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.080 0.920 41 H 0.146 0.854 42 H 0.105 0.895 43 H 0.133 0.867 44 H 0.109 0.891 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.248 2.244 -27.054 28.678 hybrid contribution 0.855 0.628 -0.112 1.067 sum -8.392 2.872 -27.166 28.577 Atomic orbital electron populations 1.20181 0.85444 1.04411 1.03188 1.21751 0.99975 0.91225 1.08568 1.26580 0.82028 1.02873 1.02548 1.84796 1.30676 1.15322 1.67372 1.73866 1.23860 0.91947 1.19588 1.23765 0.88605 0.99329 1.03534 1.20149 1.01618 0.86353 0.90349 1.60283 1.55990 1.03708 1.12657 1.22170 1.01952 0.88252 0.93698 1.20549 0.86472 0.92944 0.92467 0.91695 1.45632 1.11829 1.71752 1.05277 1.19811 0.89199 0.75497 0.83038 1.90616 1.34051 1.51306 1.67636 1.23361 0.99431 1.05445 0.99940 1.85413 1.14513 1.93364 0.98083 1.23238 0.93953 1.56265 0.96155 0.90450 1.26097 1.02978 0.94154 0.95791 1.70180 1.33275 1.47553 1.03625 0.84930 0.76680 0.78139 0.78349 1.18366 1.19748 1.19714 1.22695 1.01273 0.95342 0.98285 1.22965 0.90186 1.03496 1.02683 1.23166 1.04292 1.01758 0.95363 0.90764 0.89118 0.90407 0.73114 0.90435 0.89367 0.83876 0.90864 0.88655 0.75238 0.88056 0.88460 0.91962 0.85418 0.89519 0.86679 0.89067 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.37 71.24 0.74 0.13 16 2 C -0.21 -3.05 6.32 -19.74 -0.12 -3.17 16 3 C -0.06 -0.80 12.26 67.17 0.82 0.02 16 4 O 0.08 1.76 11.20 71.60 0.80 2.56 16 5 N -0.39 -9.49 12.07 -49.55 -0.60 -10.09 16 6 C 0.01 0.13 6.84 43.58 0.30 0.43 16 7 C 0.14 2.08 6.19 85.56 0.53 2.61 16 8 N -0.69 -11.49 6.21 -517.92 -3.22 -14.71 16 9 C 0.07 0.91 5.23 86.31 0.45 1.36 16 10 C 0.18 3.80 2.51 44.99 0.11 3.92 16 11 H 0.06 1.69 7.33 -2.39 -0.02 1.68 16 12 N -0.69 -18.32 4.78 -442.54 -2.12 -20.44 16 13 C 0.54 20.34 7.18 87.65 0.63 20.97 16 14 O -0.56 -25.18 12.89 -3.03 -0.04 -25.21 16 15 C -0.13 -5.53 6.16 71.23 0.44 -5.09 16 16 S -0.14 -8.03 20.57 -56.49 -1.16 -9.20 16 17 C -0.55 -32.43 9.50 67.95 0.65 -31.78 16 18 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 19 C 0.01 0.85 5.49 84.86 0.47 1.32 16 20 N -0.91 -56.79 13.22 21.65 0.29 -56.51 16 21 Si 1.00 44.91 29.55 68.60 2.03 46.94 16 22 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 25 C -0.16 -3.12 5.36 -10.79 -0.06 -3.18 16 26 C -0.16 -3.17 10.18 30.62 0.31 -2.86 16 27 C -0.21 -5.75 9.74 30.62 0.30 -5.45 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.08 0.50 7.65 -2.39 -0.02 0.48 16 31 H 0.25 0.94 8.06 -2.91 -0.02 0.92 16 32 H 0.08 0.72 7.65 -2.39 -0.02 0.70 16 33 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.34 6.20 8.72 -89.69 -0.78 5.41 16 35 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.41 9.36 8.60 -92.71 -0.80 8.56 16 38 H 0.10 3.97 8.14 -2.40 -0.02 3.95 16 39 H 0.10 3.92 8.14 -2.40 -0.02 3.90 16 40 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 41 H 0.13 1.93 8.11 -2.38 -0.02 1.91 16 42 H 0.09 1.89 8.05 -2.39 -0.02 1.87 16 43 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.08 3.09 5.02 -2.39 -0.01 3.08 16 Total: -1.00 -81.27 393.75 0.99 -80.28 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: -0.56 Total: 27.14 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: 5.56 Total: -20.77 kcal Atomic # 7 Polarization: -96.10 SS G_CDS: -5.65 Total: -101.75 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: 0.76 Total: -22.65 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.16 Total: -9.20 kcal Total: -81.27 0.99 -80.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269043014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.017 kcal (2) G-P(sol) polarization free energy of solvation -81.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds