Wall clock time and date at job start Tue Mar 31 2020 22:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34485 * 126.16042 * 2 1 4 4 C 1.30260 * 108.69814 * 179.97438 * 3 2 1 5 5 O 1.33967 * 108.75886 * 359.97438 * 4 3 2 6 6 C 1.34330 * 126.17007 * 179.97438 * 2 1 3 7 7 C 1.50703 * 126.44063 * 359.97438 * 6 2 1 8 8 N 1.46907 * 109.46406 * 90.00594 * 7 6 2 9 9 C 1.46902 * 110.99342 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.46665 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.47167 * 64.99944 * 10 9 8 12 12 N 1.46503 * 109.47064 * 304.99506 * 10 9 8 13 13 C 1.34778 * 119.99762 * 155.00132 * 12 10 9 14 14 O 1.21276 * 120.00169 * 0.02562 * 13 12 10 15 15 C 1.50698 * 119.99751 * 180.02562 * 13 12 10 16 16 S 1.81001 * 109.47012 * 180.02562 * 15 13 12 17 17 C 1.76202 * 100.00110 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99891 * 359.97438 * 17 16 15 19 19 C 1.38792 * 120.00219 * 179.97438 * 17 16 15 20 20 N 1.31634 * 120.00302 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99984 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47586 * 89.99967 * 21 19 17 23 23 H 1.48506 * 109.47447 * 210.00035 * 21 19 17 24 24 H 1.48500 * 109.47328 * 329.99961 * 21 19 17 25 25 C 1.53003 * 109.46927 * 184.99818 * 10 9 8 26 26 C 1.53000 * 117.49760 * 248.74473 * 25 10 9 27 27 C 1.52997 * 117.49836 * 180.08545 * 25 10 9 28 28 H 1.09010 * 109.46874 * 90.03209 * 1 2 3 29 29 H 1.09001 * 109.47525 * 210.02227 * 1 2 3 30 30 H 1.08999 * 109.47609 * 330.02940 * 1 2 3 31 31 H 1.07997 * 125.61808 * 179.97438 * 4 3 2 32 32 H 1.08993 * 109.46842 * 210.00401 * 7 6 2 33 33 H 1.08999 * 109.47191 * 330.00622 * 7 6 2 34 34 H 1.00892 * 111.00188 * 56.04702 * 8 7 6 35 35 H 1.08997 * 109.47026 * 299.99598 * 9 8 7 36 36 H 1.08998 * 109.47655 * 59.99931 * 9 8 7 37 37 H 0.96996 * 119.99906 * 335.00578 * 12 10 9 38 38 H 1.09002 * 109.47198 * 299.99722 * 15 13 12 39 39 H 1.08996 * 109.47511 * 60.00165 * 15 13 12 40 40 H 0.96993 * 119.99842 * 180.02562 * 20 19 17 41 41 H 1.09006 * 115.55199 * 34.41508 * 25 10 9 42 42 H 1.08996 * 117.49852 * 0.02562 * 26 25 10 43 43 H 1.09004 * 117.49855 * 145.02434 * 26 25 10 44 44 H 1.09007 * 117.50038 * 214.98004 * 27 25 10 45 45 H 1.09003 * 117.49994 * 0.02562 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0858 0.0000 4 6 3.5431 0.6949 0.0006 5 8 3.5734 -0.6444 0.0015 6 6 2.2998 -1.0844 0.0005 7 6 1.8494 -2.5226 0.0017 8 7 1.7027 -2.9907 -1.3831 9 6 1.2632 -4.3920 -1.4211 10 6 1.1226 -4.8429 -2.8764 11 1 2.1016 -4.8346 -3.3555 12 7 0.2237 -3.9293 -3.5861 13 6 0.3217 -3.7910 -4.9232 14 8 1.1536 -4.4231 -5.5389 15 6 -0.6026 -2.8508 -5.6531 16 16 -0.2256 -2.8874 -7.4230 17 6 -1.4180 -1.7324 -8.0137 18 1 -2.0930 -1.2514 -7.3214 19 6 -1.4896 -1.4406 -9.3688 20 7 -2.3807 -0.5781 -9.8101 21 14 -0.3216 -2.2720 -10.5662 22 1 -0.9322 -3.5328 -11.0589 23 1 -0.0619 -1.3662 -11.7141 24 1 0.9581 -2.5779 -9.8778 25 6 0.5466 -6.2597 -2.9179 26 6 1.4690 -7.3837 -3.3939 27 6 0.3308 -6.8946 -4.2931 28 1 -0.3633 -0.0006 -1.0278 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3634 0.8902 0.5134 31 1 4.4065 1.3436 0.0003 32 1 2.5902 -3.1348 0.5157 33 1 0.8916 -2.6029 0.5158 34 1 2.5604 -2.8663 -1.8996 35 1 1.9997 -5.0175 -0.9168 36 1 0.3013 -4.4850 -0.9170 37 1 -0.4418 -3.4240 -3.0937 38 1 -1.6354 -3.1614 -5.4955 39 1 -0.4655 -1.8385 -5.2729 40 1 -2.4310 -0.3746 -10.7571 41 1 -0.1739 -6.4974 -2.1352 42 1 2.4864 -7.1139 -3.6771 43 1 1.3551 -8.3610 -2.9247 44 1 -0.5314 -7.5503 -4.4151 45 1 0.5997 -6.3032 -5.1683 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269043527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:26 Heat of formation + Delta-G solvation = 11.419403 kcal Electronic energy + Delta-G solvation = -26644.657786 eV Core-core repulsion = 22790.996053 eV Total energy + Delta-G solvation = -3853.661732 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.59420 -39.84975 -37.52036 -36.47610 -35.39626 -33.97734 -32.40733 -32.12425 -30.21589 -28.73761 -27.37384 -25.58718 -25.25422 -22.81908 -22.37740 -22.25081 -21.18247 -20.78864 -20.21974 -17.85164 -17.47349 -16.99359 -16.74922 -16.46038 -15.93949 -15.55805 -15.41641 -14.96843 -14.82932 -14.60678 -14.34755 -13.84812 -13.74090 -13.45938 -13.24645 -13.21756 -12.95787 -12.76566 -12.49688 -12.27635 -12.18080 -11.90262 -11.56369 -11.28480 -11.23631 -11.23558 -10.98247 -10.77373 -10.58839 -10.36579 -10.22573 -9.82531 -9.41412 -9.10172 -8.97529 -8.84613 -8.76969 -8.45897 -6.87169 -6.25796 -3.96759 1.13577 2.40234 2.46329 2.80733 3.02850 3.29364 3.35187 3.52364 3.61115 3.76045 3.90982 3.97656 4.32153 4.35775 4.48862 4.56375 4.73303 4.77887 4.82473 4.92046 4.97116 5.02162 5.08701 5.13389 5.18846 5.25830 5.34980 5.42736 5.46150 5.52102 5.64114 5.67808 5.73915 5.82226 5.84699 5.98511 6.09146 6.10226 6.11808 6.38093 6.44992 6.66587 6.84176 7.45910 7.76425 7.97495 8.45463 8.60298 9.20597 10.83607 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008940 B = 0.003095 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.199920 B = 9045.420630 C =11344.651523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.013 3.987 3 N -0.487 5.487 4 C 0.174 3.826 5 O -0.206 6.206 6 C -0.056 4.056 7 C 0.151 3.849 8 N -0.681 5.681 9 C 0.055 3.945 10 C 0.182 3.818 11 H 0.086 0.914 12 N -0.714 5.714 13 C 0.535 3.465 14 O -0.524 6.524 15 C -0.123 4.123 16 S -0.142 6.142 17 C -0.520 4.520 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.881 5.881 21 Si 0.856 3.144 22 H -0.268 1.268 23 H -0.275 1.275 24 H -0.235 1.235 25 C -0.172 4.172 26 C -0.174 4.174 27 C -0.176 4.176 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.249 0.751 32 H 0.049 0.951 33 H 0.106 0.894 34 H 0.350 0.650 35 H 0.049 0.951 36 H 0.083 0.917 37 H 0.402 0.598 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.270 0.730 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.892 -6.633 25.214 27.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.107 4.107 3 N -0.216 5.216 4 C -0.052 4.052 5 O -0.093 6.093 6 C -0.109 4.109 7 C 0.022 3.978 8 N -0.313 5.313 9 C -0.074 4.074 10 C 0.076 3.924 11 H 0.104 0.896 12 N -0.367 5.367 13 C 0.322 3.678 14 O -0.400 6.400 15 C -0.273 4.273 16 S 0.084 5.916 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.518 5.518 21 Si 0.681 3.319 22 H -0.193 1.193 23 H -0.200 1.200 24 H -0.159 1.159 25 C -0.192 4.192 26 C -0.212 4.212 27 C -0.213 4.213 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.265 0.735 32 H 0.067 0.933 33 H 0.124 0.876 34 H 0.168 0.832 35 H 0.067 0.933 36 H 0.101 0.899 37 H 0.237 0.763 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.080 0.920 41 H 0.120 0.880 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.105 0.895 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.406 -6.730 23.981 26.624 hybrid contribution 0.179 -0.152 0.544 0.592 sum 9.585 -6.882 24.524 27.215 Atomic orbital electron populations 1.20140 0.86262 1.02847 1.03580 1.21544 0.98113 0.87305 1.03781 1.70402 1.01431 1.31850 1.17937 1.28022 0.97649 0.79187 1.00359 1.84407 1.30231 1.24807 1.69829 1.22923 0.80759 0.97642 1.09528 1.20209 1.00875 0.85634 0.91101 1.60434 1.38973 1.20150 1.11776 1.22248 1.01311 0.87576 0.96260 1.20375 0.94414 0.86745 0.90889 0.89594 1.45786 1.38429 1.45423 1.07023 1.20192 0.83913 0.81982 0.81724 1.90613 1.36431 1.46226 1.66704 1.23261 1.01547 1.01410 1.01115 1.84727 1.49993 1.59143 0.97754 1.22330 1.20070 1.27665 0.96700 0.89433 1.24709 0.95031 0.94101 0.97467 1.69941 1.33815 1.32612 1.15441 0.86740 0.83460 0.79998 0.81668 1.19257 1.20010 1.15938 1.22621 1.03669 0.93236 0.99713 1.22918 0.96250 0.97500 1.04507 1.23335 0.99555 1.03192 0.95214 0.89923 0.90841 0.90876 0.73504 0.93316 0.87650 0.83167 0.93309 0.89884 0.76339 0.88704 0.88571 0.91991 0.88002 0.88872 0.89217 0.89454 0.85788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.22 36.00 0.37 -0.23 16 2 C 0.01 0.14 7.11 -82.81 -0.59 -0.45 16 3 N -0.49 -5.66 11.30 -11.18 -0.13 -5.79 16 4 C 0.17 1.53 13.23 52.10 0.69 2.22 16 5 O -0.21 -2.01 10.77 5.38 0.06 -1.96 16 6 C -0.06 -0.53 6.90 -35.69 -0.25 -0.77 16 7 C 0.15 1.02 6.02 -4.97 -0.03 0.99 16 8 N -0.68 -5.31 6.21 -115.05 -0.71 -6.02 16 9 C 0.06 0.38 5.23 -3.82 -0.02 0.36 16 10 C 0.18 1.82 2.51 -67.93 -0.17 1.65 16 11 H 0.09 1.05 7.34 -51.93 -0.38 0.67 16 12 N -0.71 -8.53 4.78 -53.80 -0.26 -8.79 16 13 C 0.54 9.05 7.18 -10.99 -0.08 8.97 16 14 O -0.52 -10.49 12.89 5.56 0.07 -10.42 16 15 C -0.12 -2.36 6.16 36.00 0.22 -2.14 16 16 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 17 C -0.52 -15.07 10.04 30.94 0.31 -14.76 16 18 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 19 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 20 N -0.88 -26.80 13.97 55.49 0.78 -26.03 16 21 Si 0.86 21.92 27.74 -169.99 -4.71 17.21 16 22 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 25 C -0.17 -1.71 5.36 -90.62 -0.49 -2.19 16 26 C -0.17 -1.77 10.18 -26.69 -0.27 -2.04 16 27 C -0.18 -2.23 9.73 -26.69 -0.26 -2.49 16 28 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 29 H 0.07 0.45 7.17 -51.93 -0.37 0.08 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.25 0.96 8.06 -52.49 -0.42 0.53 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.11 0.55 7.17 -51.93 -0.37 0.18 16 34 H 0.35 3.16 8.72 -39.30 -0.34 2.82 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.40 4.06 8.60 -40.82 -0.35 3.71 16 38 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 39 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 40 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.10 0.85 8.11 -51.93 -0.42 0.43 16 42 H 0.09 0.99 8.05 -51.93 -0.42 0.57 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.12 2.04 5.02 -51.93 -0.26 1.77 16 LS Contribution 390.37 15.07 5.88 5.88 Total: -1.00 -35.46 390.37 -8.40 -43.86 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -6.72 Total: 5.81 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -0.66 Total: -8.17 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -0.32 Total: -46.63 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.13 Total: -12.38 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.21 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.46 -8.40 -43.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269043527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.284 kcal (2) G-P(sol) polarization free energy of solvation -35.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds