Wall clock time and date at job start Tue Mar 31 2020 22:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34485 * 126.16042 * 2 1 4 4 C 1.30260 * 108.69814 * 179.97438 * 3 2 1 5 5 O 1.33967 * 108.75886 * 359.97438 * 4 3 2 6 6 C 1.34330 * 126.17007 * 179.97438 * 2 1 3 7 7 C 1.50703 * 126.44063 * 359.97438 * 6 2 1 8 8 N 1.46907 * 109.46406 * 90.00594 * 7 6 2 9 9 C 1.46902 * 110.99342 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.46665 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.47167 * 64.99944 * 10 9 8 12 12 N 1.46503 * 109.47064 * 304.99506 * 10 9 8 13 13 C 1.34778 * 119.99762 * 155.00132 * 12 10 9 14 14 O 1.21276 * 120.00169 * 0.02562 * 13 12 10 15 15 C 1.50698 * 119.99751 * 180.02562 * 13 12 10 16 16 S 1.81001 * 109.47012 * 180.02562 * 15 13 12 17 17 C 1.76202 * 100.00110 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99891 * 359.97438 * 17 16 15 19 19 C 1.38792 * 120.00219 * 179.97438 * 17 16 15 20 20 N 1.31634 * 120.00302 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99984 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47586 * 89.99967 * 21 19 17 23 23 H 1.48506 * 109.47447 * 210.00035 * 21 19 17 24 24 H 1.48500 * 109.47328 * 329.99961 * 21 19 17 25 25 C 1.53003 * 109.46927 * 184.99818 * 10 9 8 26 26 C 1.53000 * 117.49760 * 248.74473 * 25 10 9 27 27 C 1.52997 * 117.49836 * 180.08545 * 25 10 9 28 28 H 1.09010 * 109.46874 * 90.03209 * 1 2 3 29 29 H 1.09001 * 109.47525 * 210.02227 * 1 2 3 30 30 H 1.08999 * 109.47609 * 330.02940 * 1 2 3 31 31 H 1.07997 * 125.61808 * 179.97438 * 4 3 2 32 32 H 1.08993 * 109.46842 * 210.00401 * 7 6 2 33 33 H 1.08999 * 109.47191 * 330.00622 * 7 6 2 34 34 H 1.00892 * 111.00188 * 56.04702 * 8 7 6 35 35 H 1.08997 * 109.47026 * 299.99598 * 9 8 7 36 36 H 1.08998 * 109.47655 * 59.99931 * 9 8 7 37 37 H 0.96996 * 119.99906 * 335.00578 * 12 10 9 38 38 H 1.09002 * 109.47198 * 299.99722 * 15 13 12 39 39 H 1.08996 * 109.47511 * 60.00165 * 15 13 12 40 40 H 0.96993 * 119.99842 * 180.02562 * 20 19 17 41 41 H 1.09006 * 115.55199 * 34.41508 * 25 10 9 42 42 H 1.08996 * 117.49852 * 0.02562 * 26 25 10 43 43 H 1.09004 * 117.49855 * 145.02434 * 26 25 10 44 44 H 1.09007 * 117.50038 * 214.98004 * 27 25 10 45 45 H 1.09003 * 117.49994 * 0.02562 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0858 0.0000 4 6 3.5431 0.6949 0.0006 5 8 3.5734 -0.6444 0.0015 6 6 2.2998 -1.0844 0.0005 7 6 1.8494 -2.5226 0.0017 8 7 1.7027 -2.9907 -1.3831 9 6 1.2632 -4.3920 -1.4211 10 6 1.1226 -4.8429 -2.8764 11 1 2.1016 -4.8346 -3.3555 12 7 0.2237 -3.9293 -3.5861 13 6 0.3217 -3.7910 -4.9232 14 8 1.1536 -4.4231 -5.5389 15 6 -0.6026 -2.8508 -5.6531 16 16 -0.2256 -2.8874 -7.4230 17 6 -1.4180 -1.7324 -8.0137 18 1 -2.0930 -1.2514 -7.3214 19 6 -1.4896 -1.4406 -9.3688 20 7 -2.3807 -0.5781 -9.8101 21 14 -0.3216 -2.2720 -10.5662 22 1 -0.9322 -3.5328 -11.0589 23 1 -0.0619 -1.3662 -11.7141 24 1 0.9581 -2.5779 -9.8778 25 6 0.5466 -6.2597 -2.9179 26 6 1.4690 -7.3837 -3.3939 27 6 0.3308 -6.8946 -4.2931 28 1 -0.3633 -0.0006 -1.0278 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3634 0.8902 0.5134 31 1 4.4065 1.3436 0.0003 32 1 2.5902 -3.1348 0.5157 33 1 0.8916 -2.6029 0.5158 34 1 2.5604 -2.8663 -1.8996 35 1 1.9997 -5.0175 -0.9168 36 1 0.3013 -4.4850 -0.9170 37 1 -0.4418 -3.4240 -3.0937 38 1 -1.6354 -3.1614 -5.4955 39 1 -0.4655 -1.8385 -5.2729 40 1 -2.4310 -0.3746 -10.7571 41 1 -0.1739 -6.4974 -2.1352 42 1 2.4864 -7.1139 -3.6771 43 1 1.3551 -8.3610 -2.9247 44 1 -0.5314 -7.5503 -4.4151 45 1 0.5997 -6.3032 -5.1683 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269043527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:25 Heat of formation + Delta-G solvation = -16.859342 kcal Electronic energy + Delta-G solvation = -26645.884044 eV Core-core repulsion = 22790.996053 eV Total energy + Delta-G solvation = -3854.887991 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.27650 -40.98976 -38.51943 -37.16138 -36.10689 -35.01706 -34.66417 -32.90941 -31.34253 -29.73440 -28.20164 -27.81017 -25.91144 -23.50392 -23.15966 -23.00498 -22.09307 -21.73210 -21.19934 -19.84916 -18.19429 -17.92951 -17.68973 -17.44236 -17.08630 -16.96386 -16.42653 -16.21737 -15.89487 -15.68398 -15.31801 -14.96778 -14.86598 -14.75445 -14.52347 -14.11911 -13.91500 -13.60937 -13.51884 -13.33694 -13.08316 -13.01069 -12.89490 -12.82187 -12.59525 -12.29190 -12.22647 -11.98162 -11.86900 -11.50099 -11.26984 -11.16526 -11.09279 -10.76685 -10.51547 -9.90251 -9.72917 -9.41530 -8.96773 -8.51164 -6.20899 0.47219 1.01433 1.30754 1.46983 1.57700 1.67824 1.70762 1.85703 2.23970 2.28612 2.72476 2.87103 3.02804 3.14294 3.35622 3.70652 3.81804 3.94245 3.96392 4.02547 4.16713 4.19935 4.27057 4.31000 4.36416 4.42817 4.50514 4.52995 4.70478 4.75179 4.85112 4.85558 4.88745 4.95747 5.04288 5.09479 5.19394 5.30366 5.42675 5.47028 5.60531 5.71211 5.88401 6.11863 6.18146 6.64166 6.77349 6.94184 7.35712 8.61575 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008940 B = 0.003095 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.199920 B = 9045.420630 C =11344.651523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.014 4.014 3 N -0.530 5.530 4 C 0.179 3.821 5 O -0.215 6.215 6 C -0.060 4.060 7 C 0.155 3.845 8 N -0.692 5.692 9 C 0.066 3.934 10 C 0.180 3.820 11 H 0.063 0.937 12 N -0.690 5.690 13 C 0.539 3.461 14 O -0.558 6.558 15 C -0.110 4.110 16 S -0.172 6.172 17 C -0.529 4.529 18 H 0.059 0.941 19 C 0.045 3.955 20 N -0.918 5.918 21 Si 0.915 3.085 22 H -0.261 1.261 23 H -0.260 1.260 24 H -0.237 1.237 25 C -0.155 4.155 26 C -0.161 4.161 27 C -0.207 4.207 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.287 0.713 32 H 0.062 0.938 33 H 0.126 0.874 34 H 0.340 0.660 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.415 0.585 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.277 0.723 41 H 0.131 0.869 42 H 0.084 0.916 43 H 0.113 0.887 44 H 0.091 0.909 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.638 -8.226 27.613 30.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.134 4.134 3 N -0.259 5.259 4 C -0.047 4.047 5 O -0.102 6.102 6 C -0.112 4.112 7 C 0.027 3.973 8 N -0.323 5.323 9 C -0.062 4.062 10 C 0.075 3.925 11 H 0.081 0.919 12 N -0.342 5.342 13 C 0.324 3.676 14 O -0.437 6.437 15 C -0.261 4.261 16 S 0.055 5.945 17 C -0.677 4.677 18 H 0.078 0.922 19 C -0.160 4.160 20 N -0.557 5.557 21 Si 0.737 3.263 22 H -0.186 1.186 23 H -0.184 1.184 24 H -0.161 1.161 25 C -0.174 4.174 26 C -0.198 4.198 27 C -0.244 4.244 28 H 0.091 0.909 29 H 0.117 0.883 30 H 0.086 0.914 31 H 0.302 0.698 32 H 0.080 0.920 33 H 0.144 0.856 34 H 0.158 0.842 35 H 0.087 0.913 36 H 0.125 0.875 37 H 0.252 0.748 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.086 0.914 41 H 0.148 0.852 42 H 0.103 0.897 43 H 0.131 0.869 44 H 0.110 0.890 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.125 -8.320 26.432 29.503 hybrid contribution -0.052 0.371 -0.058 0.379 sum 10.073 -7.949 26.374 29.330 Atomic orbital electron populations 1.20173 0.85316 1.03893 1.03172 1.21944 0.99099 0.87622 1.04715 1.70391 1.02825 1.33024 1.19707 1.28928 0.98118 0.79276 0.98400 1.84422 1.30591 1.25275 1.69924 1.23396 0.80424 0.98648 1.08765 1.20339 1.02254 0.84085 0.90617 1.60442 1.38619 1.20799 1.12473 1.22204 1.03112 0.87289 0.93640 1.20549 0.92677 0.86700 0.92535 0.91925 1.45571 1.38393 1.44996 1.05196 1.19750 0.83202 0.81415 0.83225 1.90621 1.37777 1.47488 1.67786 1.23252 1.03061 1.02949 0.96873 1.84616 1.49016 1.57850 1.03042 1.22491 1.20387 1.28147 0.96681 0.92238 1.25566 0.96535 0.94693 0.99183 1.70021 1.35392 1.33953 1.16290 0.85863 0.81309 0.79390 0.79773 1.18614 1.18383 1.16102 1.22709 1.03596 0.92748 0.98364 1.22960 0.95110 0.98705 1.03042 1.23177 1.01280 1.04605 0.95344 0.90939 0.88338 0.91354 0.69784 0.91952 0.85595 0.84231 0.91338 0.87523 0.74813 0.87416 0.87751 0.91400 0.85154 0.89732 0.86897 0.89030 0.89717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.08 10.22 71.23 0.73 -0.36 16 2 C -0.01 -0.29 7.11 41.26 0.29 0.00 16 3 N -0.53 -12.10 11.30 -304.07 -3.43 -15.54 16 4 C 0.18 2.95 13.23 130.48 1.73 4.67 16 5 O -0.22 -3.91 10.77 -3.68 -0.04 -3.95 16 6 C -0.06 -1.03 6.90 24.79 0.17 -0.86 16 7 C 0.16 1.61 6.02 85.56 0.52 2.13 16 8 N -0.69 -8.80 6.21 -517.91 -3.22 -12.02 16 9 C 0.07 0.64 5.23 86.30 0.45 1.09 16 10 C 0.18 3.17 2.51 44.99 0.11 3.29 16 11 H 0.06 1.46 7.34 -2.39 -0.02 1.44 16 12 N -0.69 -15.19 4.78 -442.52 -2.12 -17.30 16 13 C 0.54 17.93 7.18 87.66 0.63 18.56 16 14 O -0.56 -22.59 12.89 -3.02 -0.04 -22.63 16 15 C -0.11 -4.22 6.16 71.24 0.44 -3.78 16 16 S -0.17 -8.76 18.55 -56.49 -1.05 -9.81 16 17 C -0.53 -31.36 10.04 67.95 0.68 -30.68 16 18 H 0.06 3.73 8.03 -2.91 -0.02 3.71 16 19 C 0.05 2.71 5.50 84.85 0.47 3.17 16 20 N -0.92 -56.76 13.97 21.65 0.30 -56.45 16 21 Si 0.91 45.64 27.74 68.60 1.90 47.55 16 22 H -0.26 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.24 -11.81 6.74 99.48 0.67 -11.14 16 25 C -0.15 -2.61 5.36 -10.79 -0.06 -2.67 16 26 C -0.16 -2.91 10.18 30.62 0.31 -2.60 16 27 C -0.21 -5.05 9.73 30.62 0.30 -4.75 16 28 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.10 0.97 7.17 -2.39 -0.02 0.95 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.29 1.68 8.06 -2.91 -0.02 1.65 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.13 0.78 7.17 -2.39 -0.02 0.76 16 34 H 0.34 5.52 8.72 -89.70 -0.78 4.73 16 35 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.11 0.61 8.14 -2.39 -0.02 0.60 16 37 H 0.42 7.23 8.60 -92.71 -0.80 6.43 16 38 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 39 H 0.10 3.82 8.14 -2.40 -0.02 3.80 16 40 H 0.28 15.79 8.31 -92.71 -0.77 15.02 16 41 H 0.13 1.53 8.11 -2.38 -0.02 1.51 16 42 H 0.08 1.69 8.05 -2.39 -0.02 1.67 16 43 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 44 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 45 H 0.08 2.84 5.02 -2.39 -0.01 2.83 16 Total: -1.00 -80.20 390.37 -1.51 -81.71 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: -0.59 Total: 21.23 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: 6.77 Total: -12.78 kcal Atomic # 7 Polarization: -92.85 SS G_CDS: -8.47 Total: -101.32 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.08 Total: -26.58 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.90 Total: 47.55 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.05 Total: -9.81 kcal Total: -80.20 -1.51 -81.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269043527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.854 kcal (2) G-P(sol) polarization free energy of solvation -80.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds