Wall clock time and date at job start Tue Mar 31 2020 22:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34335 * 126.43741 * 2 1 4 4 N 1.34479 * 107.66475 * 179.72841 * 3 2 1 5 5 C 1.30259 * 108.70026 * 0.42673 * 4 3 2 6 6 C 1.50704 * 125.61729 * 179.83968 * 5 4 3 7 7 N 1.46898 * 109.47243 * 89.69596 * 6 5 4 8 8 C 1.48565 * 110.99618 * 285.41734 * 7 6 5 9 9 C 1.54384 * 104.59241 * 200.96367 * 8 7 6 10 10 C 1.54256 * 105.06097 * 23.84791 * 9 8 7 11 11 C 1.53004 * 110.40924 * 118.94438 * 10 9 8 12 12 N 1.46503 * 110.32636 * 241.10576 * 10 9 8 13 13 C 1.34781 * 119.99634 * 295.63990 * 12 10 9 14 14 O 1.21274 * 120.00344 * 359.97438 * 13 12 10 15 15 C 1.50701 * 119.99423 * 179.97438 * 13 12 10 16 16 S 1.81001 * 109.46896 * 180.02562 * 15 13 12 17 17 C 1.76201 * 99.99894 * 180.02562 * 16 15 13 18 18 H 1.07991 * 120.00323 * 359.97438 * 17 16 15 19 19 C 1.38805 * 119.99766 * 179.97438 * 17 16 15 20 20 N 1.31633 * 120.00034 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46807 * 179.97438 * 21 19 17 23 23 H 1.48497 * 109.46906 * 300.00462 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.48563 * 111.00065 * 169.99997 * 7 6 5 26 26 O 1.33963 * 108.76077 * 359.57233 * 5 4 3 27 27 H 1.08999 * 109.46579 * 270.01723 * 1 2 3 28 28 H 1.08992 * 109.47462 * 30.02069 * 1 2 3 29 29 H 1.09001 * 109.47044 * 150.01985 * 1 2 3 30 30 H 1.07992 * 126.16868 * 359.97438 * 3 2 1 31 31 H 1.08993 * 109.47070 * 329.68787 * 6 5 4 32 32 H 1.09003 * 109.46932 * 209.69038 * 6 5 4 33 33 H 1.09005 * 110.40874 * 319.73512 * 8 7 6 34 34 H 1.08996 * 110.41537 * 82.18319 * 8 7 6 35 35 H 1.09000 * 110.31955 * 264.95460 * 9 8 7 36 36 H 1.08992 * 110.32375 * 142.75022 * 9 8 7 37 37 H 1.08996 * 109.47369 * 182.88453 * 11 10 9 38 38 H 1.09005 * 109.46712 * 302.88874 * 11 10 9 39 39 H 1.09003 * 109.47081 * 62.88265 * 11 10 9 40 40 H 0.96994 * 119.99836 * 115.64110 * 12 10 9 41 41 H 1.09001 * 109.47454 * 60.00304 * 15 13 12 42 42 H 1.09003 * 109.47322 * 299.99933 * 15 13 12 43 43 H 0.97001 * 119.99662 * 179.97438 * 20 19 17 44 44 H 1.09005 * 110.41030 * 40.25640 * 25 7 6 45 45 H 1.09001 * 110.40937 * 277.81474 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0807 0.0000 4 7 3.5782 0.6480 0.0061 5 6 3.5765 -0.6546 0.0005 6 6 4.8006 -1.5338 0.0010 7 7 5.1979 -1.8194 1.3861 8 6 5.8395 -0.6340 2.0110 9 6 6.6579 -1.2094 3.1868 10 6 6.9261 -2.6802 2.8067 11 6 8.4304 -2.9368 2.6960 12 7 6.3291 -3.5789 3.7977 13 6 6.7781 -3.5743 5.0685 14 8 7.6764 -2.8264 5.3916 15 6 6.1635 -4.4984 6.0880 16 16 6.9750 -4.2569 7.6878 17 6 6.0871 -5.4272 8.6609 18 1 5.3059 -6.0217 8.2110 19 6 6.3918 -5.5848 10.0059 20 7 7.3437 -4.8598 10.5545 21 14 5.4501 -6.8249 11.0378 22 1 5.9634 -6.8009 12.4310 23 1 4.0066 -6.4764 11.0353 24 1 5.6322 -8.1837 10.4670 25 6 6.2474 -2.8698 1.4331 26 8 2.3076 -1.0839 0.0003 27 1 -0.3632 0.0003 1.0277 28 1 -0.3634 0.8897 -0.5141 29 1 -0.3633 -0.8902 -0.5135 30 1 1.9821 2.1113 -0.0004 31 1 5.6149 -1.0230 -0.5127 32 1 4.5766 -2.4687 -0.5128 33 1 6.4969 -0.1373 1.2974 34 1 5.0823 0.0589 2.3780 35 1 6.0820 -1.1562 4.1107 36 1 7.5980 -0.6686 3.2942 37 1 8.6011 -3.9651 2.3773 38 1 8.8627 -2.2533 1.9651 39 1 8.8991 -2.7746 3.6667 40 1 5.6109 -4.1773 3.5392 41 1 6.2934 -5.5319 5.7667 42 1 5.1002 -4.2785 6.1835 43 1 7.5563 -4.9697 11.4945 44 1 6.9686 -2.7228 0.6291 45 1 5.7973 -3.8602 1.3650 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270537269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:50 Heat of formation + Delta-G solvation = -3.185519 kcal Electronic energy + Delta-G solvation = -26606.475149 eV Core-core repulsion = 22752.180099 eV Total energy + Delta-G solvation = -3854.295049 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.59417 -40.32506 -38.30148 -35.17850 -34.75775 -32.98720 -32.40545 -31.82087 -30.05048 -28.78225 -28.37256 -26.14476 -25.45708 -24.72910 -22.52914 -21.95048 -21.15989 -21.00329 -19.32391 -17.83823 -17.25316 -17.18949 -16.54695 -16.28407 -15.61630 -15.35498 -15.01827 -14.82093 -14.78487 -14.26859 -14.21004 -13.76635 -13.49871 -13.49205 -13.19637 -13.07581 -12.90534 -12.74192 -12.68698 -12.46215 -12.11301 -11.97525 -11.85471 -11.56577 -11.34944 -11.06935 -11.02187 -10.99595 -10.84407 -10.80823 -10.74201 -9.79593 -9.19230 -9.12898 -9.03889 -8.88059 -8.77891 -8.21003 -6.46830 -6.19450 -3.89450 1.11192 2.27035 2.39467 3.06378 3.15061 3.24988 3.28958 3.33002 3.51873 3.74231 3.85070 4.21630 4.23388 4.35473 4.51891 4.65877 4.70759 4.88315 4.91315 4.98625 5.02172 5.08398 5.15573 5.16359 5.17559 5.20200 5.33374 5.43574 5.54770 5.61641 5.69652 5.72951 5.75501 5.80727 5.93264 5.96931 5.99686 6.18044 6.20953 6.29192 6.46661 6.47980 6.81312 7.44991 7.61570 7.81502 8.37319 8.69786 9.25825 10.87881 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014702 B = 0.002230 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.070088 B =12550.509850 C =13800.527046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.047 4.047 3 C -0.045 4.045 4 N -0.476 5.476 5 C 0.201 3.799 6 C 0.139 3.861 7 N -0.508 5.508 8 C 0.036 3.964 9 C -0.124 4.124 10 C 0.179 3.821 11 C -0.162 4.162 12 N -0.725 5.725 13 C 0.535 3.465 14 O -0.514 6.514 15 C -0.154 4.154 16 S -0.059 6.059 17 C -0.535 4.535 18 H 0.071 0.929 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.283 1.283 23 H -0.274 1.274 24 H -0.274 1.274 25 C 0.034 3.966 26 O -0.194 6.194 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.182 0.818 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.399 0.601 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.269 0.731 44 H 0.065 0.935 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.406 7.622 -26.560 29.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.101 4.101 3 C -0.184 4.184 4 N -0.206 5.206 5 C -0.006 4.006 6 C 0.010 3.990 7 N -0.233 5.233 8 C -0.091 4.091 9 C -0.163 4.163 10 C 0.091 3.909 11 C -0.220 4.220 12 N -0.380 5.380 13 C 0.321 3.679 14 O -0.388 6.388 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.744 3.256 22 H -0.208 1.208 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.094 4.094 26 O -0.080 6.080 27 H 0.104 0.896 28 H 0.110 0.890 29 H 0.097 0.903 30 H 0.199 0.801 31 H 0.102 0.898 32 H 0.122 0.878 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.108 0.892 40 H 0.233 0.767 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.752 9.066 -25.580 28.225 hybrid contribution -2.082 -1.977 -0.266 2.883 sum -9.834 7.089 -25.846 28.548 Atomic orbital electron populations 1.20281 0.83994 1.04276 1.03996 1.23507 0.95121 0.84637 1.06786 1.23060 0.87789 1.00345 1.07178 1.70423 1.23195 1.09168 1.17784 1.25875 0.84147 0.89924 1.00640 1.20499 0.89117 0.97425 0.91971 1.65358 1.35995 1.07719 1.14232 1.23224 0.97206 0.92456 0.96237 1.22734 1.00574 0.94425 0.98534 1.20847 0.93198 0.90049 0.86775 1.22250 0.93935 1.01417 1.04412 1.46122 1.40066 1.42587 1.09187 1.20225 0.82512 0.83178 0.81965 1.90654 1.29061 1.40081 1.79045 1.23541 1.04335 1.01036 1.01528 1.85350 1.48329 1.53603 0.95978 1.22833 1.23270 1.25225 0.97042 0.91033 1.24988 0.95317 0.96415 0.96866 1.70010 1.28770 1.38484 1.13069 0.86234 0.79772 0.80808 0.78746 1.20830 1.19957 1.19959 1.23418 0.92914 0.96511 0.96543 1.84393 1.17764 1.36463 1.69396 0.89616 0.89010 0.90341 0.80072 0.89828 0.87790 0.92986 0.89933 0.90055 0.90099 0.92476 0.92153 0.89216 0.76700 0.89376 0.89362 0.92166 0.91715 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.43 36.01 0.38 0.04 16 2 C -0.05 -0.42 7.39 -35.68 -0.26 -0.69 16 3 C -0.04 -0.43 11.80 -17.77 -0.21 -0.64 16 4 N -0.48 -5.51 11.29 -11.10 -0.13 -5.64 16 5 C 0.20 2.16 7.51 -12.94 -0.10 2.06 16 6 C 0.14 1.13 5.46 -4.97 -0.03 1.10 16 7 N -0.51 -4.93 5.33 -231.40 -1.23 -6.17 16 8 C 0.04 0.39 6.12 -2.18 -0.01 0.38 16 9 C -0.12 -1.56 5.58 -25.35 -0.14 -1.70 16 10 C 0.18 2.06 1.01 -130.44 -0.13 1.93 16 11 C -0.16 -1.90 8.14 37.16 0.30 -1.59 16 12 N -0.72 -9.69 5.08 -46.33 -0.24 -9.93 16 13 C 0.53 9.75 7.05 -10.98 -0.08 9.68 16 14 O -0.51 -11.06 13.16 5.56 0.07 -10.99 16 15 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 16 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 17 C -0.54 -15.34 9.50 30.94 0.29 -15.04 16 18 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.29 13.22 55.49 0.73 -25.55 16 21 Si 0.92 21.54 29.55 -169.99 -5.02 16.51 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 C 0.03 0.29 5.65 -2.18 -0.01 0.27 16 26 O -0.19 -2.13 10.77 5.39 0.06 -2.07 16 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.18 1.22 8.06 -52.49 -0.42 0.79 16 31 H 0.08 0.58 7.77 -51.93 -0.40 0.18 16 32 H 0.10 0.63 8.08 -51.93 -0.42 0.21 16 33 H 0.05 0.50 7.75 -51.93 -0.40 0.10 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 1.26 7.50 -51.93 -0.39 0.87 16 36 H 0.08 1.02 7.71 -51.93 -0.40 0.62 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.09 1.38 6.07 -51.93 -0.32 1.06 16 40 H 0.40 4.40 8.28 -40.82 -0.34 4.07 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 42 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.06 0.44 7.72 -51.93 -0.40 0.04 16 45 H 0.09 0.68 7.77 -51.93 -0.40 0.27 16 LS Contribution 385.55 15.07 5.81 5.81 Total: -1.00 -35.83 385.55 -8.85 -44.68 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -6.82 Total: 2.25 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 0.12 Total: -5.08 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: -0.86 Total: -47.29 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.13 Total: -13.06 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.83 -8.85 -44.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270537269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.492 kcal (2) G-P(sol) polarization free energy of solvation -35.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds