Wall clock time and date at job start Tue Mar 31 2020 22:53:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 N 1.29030 * 124.91258 * 2 1
4 4 C 1.31781 * 117.12082 * 180.02562 * 3 2 1
5 5 C 1.50704 * 122.74891 * 179.97438 * 4 3 2
6 6 C 1.33634 * 114.50794 * 359.97438 * 4 3 2
7 7 C 1.50698 * 126.04427 * 179.97438 * 6 4 3
8 8 C 1.50705 * 109.46824 * 90.00472 * 7 6 4
9 9 O 1.21284 * 120.00023 * 0.02562 * 8 7 6
10 10 N 1.34774 * 119.99988 * 180.02562 * 8 7 6
11 11 C 1.46499 * 119.99880 * 179.97438 * 10 8 7
12 12 C 1.52998 * 109.47155 * 179.97438 * 11 10 8
13 13 O 1.42906 * 110.88399 * 67.42795 * 12 11 10
14 14 C 1.55155 * 111.00688 * 191.34773 * 12 11 10
15 15 C 1.54330 * 102.94292 * 153.57723 * 14 12 11
16 16 N 1.47026 * 107.26840 * 337.81024 * 15 14 12
17 17 C 1.36935 * 125.64362 * 178.90400 * 16 15 14
18 18 H 1.08001 * 119.99939 * 180.02562 * 17 16 15
19 19 C 1.38813 * 120.00563 * 0.02562 * 17 16 15
20 20 N 1.31620 * 119.99425 * 0.02562 * 19 17 16
21 21 Si 1.86793 * 120.00494 * 180.02562 * 19 17 16
22 22 H 1.48502 * 109.47348 * 89.99947 * 21 19 17
23 23 H 1.48497 * 109.47487 * 210.00059 * 21 19 17
24 24 H 1.48505 * 109.46970 * 330.00390 * 21 19 17
25 25 C 1.47420 * 108.70428 * 358.94103 * 16 15 14
26 26 S 1.70976 * 124.91885 * 180.31648 * 2 1 3
27 27 H 1.08998 * 109.47247 * 90.02812 * 1 2 3
28 28 H 1.09002 * 109.46564 * 210.02543 * 1 2 3
29 29 H 1.08998 * 109.47686 * 330.02106 * 1 2 3
30 30 H 1.08999 * 109.47493 * 270.00134 * 5 4 3
31 31 H 1.09007 * 109.46958 * 29.99699 * 5 4 3
32 32 H 1.09001 * 109.47458 * 149.99513 * 5 4 3
33 33 H 1.08999 * 109.47248 * 330.00836 * 7 6 4
34 34 H 1.08999 * 109.47576 * 210.00328 * 7 6 4
35 35 H 0.96999 * 119.99796 * 359.97438 * 10 8 7
36 36 H 1.09000 * 109.47314 * 59.99654 * 11 10 8
37 37 H 1.08999 * 109.47098 * 299.99930 * 11 10 8
38 38 H 0.96700 * 113.99958 * 297.57278 * 13 12 11
39 39 H 1.08998 * 110.71769 * 35.21845 * 14 12 11
40 40 H 1.08991 * 110.72382 * 271.94241 * 14 12 11
41 41 H 1.08998 * 109.88224 * 218.39343 * 15 14 12
42 42 H 1.08998 * 109.88221 * 97.22736 * 15 14 12
43 43 H 0.97001 * 119.99700 * 179.97438 * 20 19 17
44 44 H 1.08997 * 110.36858 * 142.96748 * 25 16 15
45 45 H 1.08997 * 110.36396 * 265.17736 * 25 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2454 1.0581 0.0000
4 6 3.5511 0.8794 -0.0005
5 6 4.5306 2.0247 -0.0012
6 6 3.9355 -0.4004 -0.0004
7 6 5.3575 -0.8992 -0.0015
8 6 5.8327 -1.0651 1.4190
9 8 5.0895 -0.8045 2.3414
10 7 7.0834 -1.5031 1.6644
11 6 7.5454 -1.6639 3.0453
12 6 8.9891 -2.1704 3.0444
13 8 9.8775 -1.1760 2.5304
14 6 9.4209 -2.6225 4.4644
15 6 10.5173 -3.6694 4.1754
16 7 10.3009 -4.1616 2.8070
17 6 11.0748 -5.0881 2.1605
18 1 10.8318 -5.3847 1.1508
19 6 12.1716 -5.6461 2.8027
20 7 12.4675 -5.2850 4.0333
21 14 13.2277 -6.9093 1.9205
22 1 14.3203 -6.2179 1.1902
23 1 13.8116 -7.8465 2.9133
24 1 12.3906 -7.6678 0.9564
25 6 9.1134 -3.4920 2.2459
26 16 2.4857 -1.4019 -0.0077
27 1 -0.3633 -0.0005 -1.0276
28 1 -0.3632 -0.8898 0.5143
29 1 -0.3634 0.8901 0.5135
30 1 4.7664 2.3007 -1.0289
31 1 4.0906 2.8794 0.5127
32 1 5.4434 1.7225 0.5124
33 1 5.9945 -0.1798 -0.5160
34 1 5.4055 -1.8594 -0.5151
35 1 7.6776 -1.7119 0.9267
36 1 6.9087 -2.3833 3.5601
37 1 7.4973 -0.7035 3.5587
38 1 9.7059 -0.9330 1.6103
39 1 8.5844 -3.0767 4.9954
40 1 9.8279 -1.7838 5.0291
41 1 10.4377 -4.4946 4.8831
42 1 11.5012 -3.2066 4.2516
43 1 13.2337 -5.6752 4.4823
44 1 9.2610 -3.2827 1.1865
45 1 8.2265 -4.1090 2.3900
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001271168128.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:53:50
Heat of formation + Delta-G solvation = -19.695979 kcal
Electronic energy + Delta-G solvation = -26938.495351 eV
Core-core repulsion = 23083.484354 eV
Total energy + Delta-G solvation = -3855.010996 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.44901 -39.68529 -38.44114 -35.13064 -34.23010 -34.08074 -32.15473 -31.17942
-29.64632 -29.40163 -28.23702 -26.20414 -25.27666 -23.50638 -22.95334 -21.08221
-20.10314 -19.94900 -19.07772 -18.19456 -17.62459 -16.94413 -16.39609 -15.85010
-15.54000 -15.25104 -14.94103 -14.72012 -14.43553 -14.10474 -13.78314 -13.70073
-13.64257 -13.44493 -13.37037 -12.96330 -12.81961 -12.63945 -12.33783 -12.25474
-12.07809 -11.95232 -11.74669 -11.32459 -11.03262 -10.91253 -10.74496 -10.41746
-10.28790 -10.14398 -9.96136 -9.84283 -9.77883 -9.48566 -9.38417 -9.15275
-8.75963 -8.62540 -6.87393 -5.74863 -3.08866 0.45722 1.11794 1.52659
2.49743 2.52574 3.11110 3.37302 3.41758 3.44255 3.82266 4.35074
4.43406 4.46634 4.64848 4.69685 4.72143 4.90406 5.02846 5.08865
5.09010 5.10718 5.16116 5.33101 5.35462 5.45890 5.48148 5.56815
5.62357 5.71156 5.80182 5.92750 6.06448 6.13404 6.27161 6.30368
6.39824 6.50730 6.56731 7.33276 7.49749 7.54259 7.60801 7.80184
7.95726 8.08341 8.21696 9.17064 9.77248 10.42224 11.36775
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.022643 B = 0.002188 C = 0.002113
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1236.300969 B =12794.615366 C =13251.090292
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 C 0.044 3.956
3 N -0.472 5.472
4 C 0.078 3.922
5 C -0.078 4.078
6 C -0.207 4.207
7 C -0.064 4.064
8 C 0.513 3.487
9 O -0.530 6.530
10 N -0.726 5.726
11 C 0.105 3.895
12 C 0.102 3.898
13 O -0.537 6.537
14 C -0.128 4.128
15 C 0.181 3.819
16 N -0.598 5.598
17 C -0.232 4.232
18 H 0.077 0.923
19 C -0.007 4.007
20 N -0.919 5.919
21 Si 0.913 3.087
22 H -0.288 1.288
23 H -0.290 1.290
24 H -0.282 1.282
25 C 0.117 3.883
26 S 0.131 5.869
27 H 0.085 0.915
28 H 0.080 0.920
29 H 0.088 0.912
30 H 0.075 0.925
31 H 0.076 0.924
32 H 0.073 0.927
33 H 0.115 0.885
34 H 0.108 0.892
35 H 0.400 0.600
36 H 0.077 0.923
37 H 0.074 0.926
38 H 0.364 0.636
39 H 0.072 0.928
40 H 0.072 0.928
41 H 0.044 0.956
42 H 0.051 0.949
43 H 0.253 0.747
44 H 0.037 0.963
45 H 0.026 0.974
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.836 11.343 -9.875 24.893
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.234 4.234
3 N -0.187 5.187
4 C -0.054 4.054
5 C -0.138 4.138
6 C -0.328 4.328
7 C -0.107 4.107
8 C 0.297 3.703
9 O -0.405 6.405
10 N -0.378 5.378
11 C -0.019 4.019
12 C 0.060 3.940
13 O -0.341 6.341
14 C -0.167 4.167
15 C 0.057 3.943
16 N -0.324 5.324
17 C -0.360 4.360
18 H 0.095 0.905
19 C -0.203 4.203
20 N -0.566 5.566
21 Si 0.744 3.256
22 H -0.216 1.216
23 H -0.216 1.216
24 H -0.207 1.207
25 C -0.010 4.010
26 S 0.388 5.612
27 H 0.104 0.896
28 H 0.099 0.901
29 H 0.107 0.893
30 H 0.094 0.906
31 H 0.095 0.905
32 H 0.091 0.909
33 H 0.133 0.867
34 H 0.126 0.874
35 H 0.235 0.765
36 H 0.095 0.905
37 H 0.093 0.907
38 H 0.210 0.790
39 H 0.091 0.909
40 H 0.091 0.909
41 H 0.062 0.938
42 H 0.069 0.931
43 H 0.063 0.937
44 H 0.055 0.945
45 H 0.044 0.956
Dipole moment (debyes) X Y Z Total
from point charges -20.428 10.759 -8.525 24.612
hybrid contribution 1.253 -0.141 -1.289 1.803
sum -19.175 10.618 -9.814 24.015
Atomic orbital electron populations
1.20432 0.85207 1.04267 1.03763 1.26897 1.01650 0.91178 1.03663
1.66124 1.04411 1.31695 1.16485 1.20073 0.90225 0.93898 1.01227
1.20359 0.95969 0.94819 1.02640 1.24903 0.98427 0.95746 1.13709
1.20051 0.90858 1.04148 0.95629 1.20404 0.81726 0.77169 0.90962
1.90737 1.54483 1.49322 1.45994 1.45998 1.14376 1.67941 1.09507
1.22052 0.95340 1.02119 0.82372 1.22701 0.85826 0.88120 0.97386
1.86638 1.57737 1.58843 1.30858 1.22914 1.00795 1.00210 0.92774
1.21147 0.94316 0.92695 0.86166 1.44346 1.28488 1.47169 1.12441
1.19009 1.05546 1.14265 0.97145 0.90524 1.24817 0.98671 1.00293
0.96561 1.69962 1.29256 1.45862 1.11543 0.86106 0.80413 0.80784
0.78338 1.21563 1.21632 1.20727 1.22123 0.91823 0.91373 0.95683
1.83901 0.97285 1.11981 1.68077 0.89647 0.90090 0.89296 0.90612
0.90487 0.90859 0.86655 0.87408 0.76517 0.90455 0.90743 0.79001
0.90938 0.90913 0.93758 0.93097 0.93665 0.94460 0.95613
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.50 10.46 36.00 0.38 -0.12 16
2 C 0.04 0.45 7.39 -13.46 -0.10 0.35 16
3 N -0.47 -5.82 10.53 -8.06 -0.08 -5.91 16
4 C 0.08 0.91 6.74 -84.23 -0.57 0.34 16
5 C -0.08 -0.72 9.82 36.01 0.35 -0.36 16
6 C -0.21 -2.25 5.08 -35.92 -0.18 -2.43 16
7 C -0.06 -0.56 5.63 -29.03 -0.16 -0.72 16
8 C 0.51 6.14 7.82 -10.98 -0.09 6.06 16
9 O -0.53 -8.58 16.03 5.55 0.09 -8.49 16
10 N -0.73 -8.05 5.19 -60.29 -0.31 -8.37 16
11 C 0.11 1.44 4.97 -4.04 -0.02 1.42 16
12 C 0.10 1.66 0.95 -88.47 -0.08 1.58 16
13 O -0.54 -8.86 13.18 -35.23 -0.46 -9.33 16
14 C -0.13 -2.37 6.16 -24.89 -0.15 -2.52 16
15 C 0.18 4.38 5.37 -3.06 -0.02 4.37 16
16 N -0.60 -14.87 3.39 -170.08 -0.58 -15.45 16
17 C -0.23 -6.33 10.28 -15.06 -0.15 -6.48 16
18 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16
19 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16
20 N -0.92 -26.89 10.31 55.49 0.57 -26.31 16
21 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16
22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16
23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
25 C 0.12 2.22 5.74 -2.53 -0.01 2.20 16
26 S 0.13 1.32 23.18 -107.50 -2.49 -1.17 16
27 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16
28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16
29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16
30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16
31 H 0.08 0.72 8.14 -51.92 -0.42 0.29 16
32 H 0.07 0.64 7.35 -51.93 -0.38 0.26 16
33 H 0.12 0.70 7.43 -51.93 -0.39 0.31 16
34 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16
35 H 0.40 3.53 7.31 -40.82 -0.30 3.24 16
36 H 0.08 1.13 8.00 -51.93 -0.42 0.71 16
37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16
38 H 0.36 4.43 8.57 45.56 0.39 4.82 16
39 H 0.07 1.21 7.94 -51.93 -0.41 0.80 16
40 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16
41 H 0.04 1.17 7.51 -51.93 -0.39 0.78 16
42 H 0.05 1.39 7.38 -51.93 -0.38 1.01 16
43 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16
44 H 0.04 0.65 7.80 -51.93 -0.41 0.24 16
45 H 0.03 0.50 8.04 -51.93 -0.42 0.08 16
LS Contribution 383.21 15.07 5.77 5.77
Total: -1.00 -35.80 383.21 -9.45 -45.26
By element:
Atomic # 1 Polarization: 9.82 SS G_CDS: -6.03 Total: 3.80 kcal
Atomic # 6 Polarization: 4.30 SS G_CDS: -0.91 Total: 3.39 kcal
Atomic # 7 Polarization: -55.64 SS G_CDS: -0.40 Total: -56.04 kcal
Atomic # 8 Polarization: -17.44 SS G_CDS: -0.38 Total: -17.82 kcal
Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal
Atomic # 16 Polarization: 1.32 SS G_CDS: -2.49 Total: -1.17 kcal
Total LS contribution 5.77 Total: 5.77 kcal
Total: -35.80 -9.45 -45.26 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001271168128.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.562 kcal
(2) G-P(sol) polarization free energy of solvation -35.805 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.243 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.258 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.696 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds