Wall clock time and date at job start Tue Mar 31 2020 22:53:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 N 1.29030 * 124.91258 * 2 1
4 4 C 1.31781 * 117.12082 * 180.02562 * 3 2 1
5 5 C 1.50704 * 122.74891 * 179.97438 * 4 3 2
6 6 C 1.33634 * 114.50794 * 359.97438 * 4 3 2
7 7 C 1.50698 * 126.04427 * 179.97438 * 6 4 3
8 8 C 1.50705 * 109.46824 * 90.00472 * 7 6 4
9 9 O 1.21284 * 120.00023 * 0.02562 * 8 7 6
10 10 N 1.34774 * 119.99988 * 180.02562 * 8 7 6
11 11 C 1.46499 * 119.99880 * 179.97438 * 10 8 7
12 12 C 1.52998 * 109.47155 * 179.97438 * 11 10 8
13 13 O 1.42906 * 110.88399 * 67.42795 * 12 11 10
14 14 C 1.55155 * 111.00688 * 191.34773 * 12 11 10
15 15 C 1.54330 * 102.94292 * 153.57723 * 14 12 11
16 16 N 1.47026 * 107.26840 * 337.81024 * 15 14 12
17 17 C 1.36935 * 125.64362 * 178.90400 * 16 15 14
18 18 H 1.08001 * 119.99939 * 180.02562 * 17 16 15
19 19 C 1.38813 * 120.00563 * 0.02562 * 17 16 15
20 20 N 1.31620 * 119.99425 * 0.02562 * 19 17 16
21 21 Si 1.86793 * 120.00494 * 180.02562 * 19 17 16
22 22 H 1.48502 * 109.47348 * 89.99947 * 21 19 17
23 23 H 1.48497 * 109.47487 * 210.00059 * 21 19 17
24 24 H 1.48505 * 109.46970 * 330.00390 * 21 19 17
25 25 C 1.47420 * 108.70428 * 358.94103 * 16 15 14
26 26 S 1.70976 * 124.91885 * 180.31648 * 2 1 3
27 27 H 1.08998 * 109.47247 * 90.02812 * 1 2 3
28 28 H 1.09002 * 109.46564 * 210.02543 * 1 2 3
29 29 H 1.08998 * 109.47686 * 330.02106 * 1 2 3
30 30 H 1.08999 * 109.47493 * 270.00134 * 5 4 3
31 31 H 1.09007 * 109.46958 * 29.99699 * 5 4 3
32 32 H 1.09001 * 109.47458 * 149.99513 * 5 4 3
33 33 H 1.08999 * 109.47248 * 330.00836 * 7 6 4
34 34 H 1.08999 * 109.47576 * 210.00328 * 7 6 4
35 35 H 0.96999 * 119.99796 * 359.97438 * 10 8 7
36 36 H 1.09000 * 109.47314 * 59.99654 * 11 10 8
37 37 H 1.08999 * 109.47098 * 299.99930 * 11 10 8
38 38 H 0.96700 * 113.99958 * 297.57278 * 13 12 11
39 39 H 1.08998 * 110.71769 * 35.21845 * 14 12 11
40 40 H 1.08991 * 110.72382 * 271.94241 * 14 12 11
41 41 H 1.08998 * 109.88224 * 218.39343 * 15 14 12
42 42 H 1.08998 * 109.88221 * 97.22736 * 15 14 12
43 43 H 0.97001 * 119.99700 * 179.97438 * 20 19 17
44 44 H 1.08997 * 110.36858 * 142.96748 * 25 16 15
45 45 H 1.08997 * 110.36396 * 265.17736 * 25 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2454 1.0581 0.0000
4 6 3.5511 0.8794 -0.0005
5 6 4.5306 2.0247 -0.0012
6 6 3.9355 -0.4004 -0.0004
7 6 5.3575 -0.8992 -0.0015
8 6 5.8327 -1.0651 1.4190
9 8 5.0895 -0.8045 2.3414
10 7 7.0834 -1.5031 1.6644
11 6 7.5454 -1.6639 3.0453
12 6 8.9891 -2.1704 3.0444
13 8 9.8775 -1.1760 2.5304
14 6 9.4209 -2.6225 4.4644
15 6 10.5173 -3.6694 4.1754
16 7 10.3009 -4.1616 2.8070
17 6 11.0748 -5.0881 2.1605
18 1 10.8318 -5.3847 1.1508
19 6 12.1716 -5.6461 2.8027
20 7 12.4675 -5.2850 4.0333
21 14 13.2277 -6.9093 1.9205
22 1 14.3203 -6.2179 1.1902
23 1 13.8116 -7.8465 2.9133
24 1 12.3906 -7.6678 0.9564
25 6 9.1134 -3.4920 2.2459
26 16 2.4857 -1.4019 -0.0077
27 1 -0.3633 -0.0005 -1.0276
28 1 -0.3632 -0.8898 0.5143
29 1 -0.3634 0.8901 0.5135
30 1 4.7664 2.3007 -1.0289
31 1 4.0906 2.8794 0.5127
32 1 5.4434 1.7225 0.5124
33 1 5.9945 -0.1798 -0.5160
34 1 5.4055 -1.8594 -0.5151
35 1 7.6776 -1.7119 0.9267
36 1 6.9087 -2.3833 3.5601
37 1 7.4973 -0.7035 3.5587
38 1 9.7059 -0.9330 1.6103
39 1 8.5844 -3.0767 4.9954
40 1 9.8279 -1.7838 5.0291
41 1 10.4377 -4.4946 4.8831
42 1 11.5012 -3.2066 4.2516
43 1 13.2337 -5.6752 4.4823
44 1 9.2610 -3.2827 1.1865
45 1 8.2265 -4.1090 2.3900
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001271168128.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:53:49
Heat of formation + Delta-G solvation = -47.377267 kcal
Electronic energy + Delta-G solvation = -26939.695702 eV
Core-core repulsion = 23083.484354 eV
Total energy + Delta-G solvation = -3856.211347 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 1.20 seconds
Orbital eigenvalues (eV)
-41.33269 -40.69118 -39.75506 -36.74096 -35.33338 -34.82129 -33.98614 -32.00331
-31.26933 -30.08431 -29.63705 -27.60349 -26.52118 -24.99422 -23.66081 -22.43773
-21.49035 -21.37606 -19.90063 -18.93968 -18.92376 -18.51925 -17.57759 -16.90401
-16.70681 -16.52485 -16.08384 -15.84516 -15.77204 -15.57169 -15.08839 -14.76333
-14.47133 -14.31123 -14.17269 -14.06857 -13.91022 -13.79018 -13.44195 -13.24153
-13.16625 -12.92907 -12.88407 -12.80181 -12.74637 -12.34655 -12.10185 -12.04889
-12.00171 -11.79257 -11.72560 -11.07839 -10.88066 -10.68382 -10.62144 -10.19953
-10.15839 -9.49851 -8.88466 -7.84135 -5.19649 -0.29813 0.39965 0.77305
1.46689 1.48744 1.57115 1.59659 1.73164 2.19291 2.49748 3.17117
3.20117 3.35020 3.48322 3.61609 3.64715 3.92432 3.97180 3.98616
4.04411 4.08518 4.47029 4.51170 4.53615 4.54609 4.59941 4.65017
4.67485 4.74074 4.81669 4.83615 4.93755 4.96592 4.98036 5.09519
5.09892 5.32486 5.36802 5.45309 5.63836 5.76641 6.19406 6.46900
6.78419 6.86493 7.09677 7.19466 7.77480 8.41431 9.26625
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.022643 B = 0.002188 C = 0.002113
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1236.300969 B =12794.615366 C =13251.090292
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 C 0.038 3.962
3 N -0.504 5.504
4 C 0.058 3.942
5 C -0.077 4.077
6 C -0.221 4.221
7 C -0.059 4.059
8 C 0.515 3.485
9 O -0.574 6.574
10 N -0.715 5.715
11 C 0.121 3.879
12 C 0.123 3.877
13 O -0.553 6.553
14 C -0.123 4.123
15 C 0.190 3.810
16 N -0.621 5.621
17 C -0.239 4.239
18 H 0.088 0.912
19 C -0.071 4.071
20 N -0.953 5.953
21 Si 0.980 3.020
22 H -0.287 1.287
23 H -0.298 1.298
24 H -0.266 1.266
25 C 0.113 3.887
26 S 0.133 5.867
27 H 0.103 0.897
28 H 0.096 0.904
29 H 0.089 0.911
30 H 0.095 0.905
31 H 0.068 0.932
32 H 0.077 0.923
33 H 0.147 0.853
34 H 0.132 0.868
35 H 0.414 0.586
36 H 0.072 0.928
37 H 0.074 0.926
38 H 0.385 0.615
39 H 0.092 0.908
40 H 0.080 0.920
41 H 0.007 0.993
42 H 0.007 0.993
43 H 0.245 0.755
44 H 0.060 0.940
45 H 0.034 0.966
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.069 11.670 -12.136 26.970
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.239 4.239
3 N -0.220 5.220
4 C -0.074 4.074
5 C -0.136 4.136
6 C -0.342 4.342
7 C -0.101 4.101
8 C 0.302 3.698
9 O -0.453 6.453
10 N -0.368 5.368
11 C -0.004 4.004
12 C 0.081 3.919
13 O -0.360 6.360
14 C -0.161 4.161
15 C 0.065 3.935
16 N -0.347 5.347
17 C -0.368 4.368
18 H 0.106 0.894
19 C -0.264 4.264
20 N -0.602 5.602
21 Si 0.808 3.192
22 H -0.214 1.214
23 H -0.225 1.225
24 H -0.190 1.190
25 C -0.013 4.013
26 S 0.389 5.611
27 H 0.122 0.878
28 H 0.115 0.885
29 H 0.107 0.893
30 H 0.113 0.887
31 H 0.087 0.913
32 H 0.096 0.904
33 H 0.164 0.836
34 H 0.150 0.850
35 H 0.251 0.749
36 H 0.090 0.910
37 H 0.092 0.908
38 H 0.234 0.766
39 H 0.110 0.890
40 H 0.099 0.901
41 H 0.026 0.974
42 H 0.026 0.974
43 H 0.055 0.945
44 H 0.078 0.922
45 H 0.052 0.948
Dipole moment (debyes) X Y Z Total
from point charges -21.682 11.098 -10.856 26.667
hybrid contribution 1.568 -0.216 -0.609 1.695
sum -20.114 10.882 -11.465 25.582
Atomic orbital electron populations
1.20608 0.82942 1.05053 1.05162 1.27538 1.03140 0.90891 1.02368
1.66178 1.05104 1.32742 1.17966 1.20494 0.90512 0.94964 1.01382
1.20407 0.95501 0.93857 1.03815 1.25180 0.99506 0.95687 1.13842
1.20157 0.90054 1.06267 0.93573 1.20921 0.81143 0.75874 0.91857
1.90729 1.55665 1.51287 1.47658 1.45835 1.14558 1.67564 1.08837
1.21690 0.93024 1.01730 0.83916 1.22358 0.87256 0.87151 0.95121
1.86607 1.58166 1.58498 1.32760 1.22798 0.99581 0.98889 0.94859
1.20824 0.94349 0.92616 0.85756 1.44640 1.29902 1.47323 1.12870
1.19477 1.05509 1.14203 0.97605 0.89415 1.25700 1.00462 1.02783
0.97416 1.70203 1.29603 1.47284 1.13131 0.85060 0.78679 0.78294
0.77176 1.21358 1.22479 1.19017 1.22360 0.89685 0.92133 0.97108
1.83812 0.97359 1.11956 1.67948 0.87833 0.88499 0.89252 0.88680
0.91306 0.90439 0.83559 0.85034 0.74852 0.90977 0.90757 0.76589
0.88977 0.90112 0.97432 0.97434 0.94544 0.92159 0.94847
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.89 10.46 71.24 0.75 -0.14 16
2 C 0.04 0.74 7.39 88.52 0.65 1.40 16
3 N -0.50 -12.04 10.53 -179.40 -1.89 -13.93 16
4 C 0.06 1.28 6.74 41.52 0.28 1.56 16
5 C -0.08 -1.28 9.82 71.24 0.70 -0.58 16
6 C -0.22 -4.39 5.08 24.64 0.13 -4.26 16
7 C -0.06 -0.83 5.63 29.10 0.16 -0.67 16
8 C 0.52 10.96 7.82 87.66 0.69 11.64 16
9 O -0.57 -17.70 16.03 -3.04 -0.05 -17.75 16
10 N -0.71 -13.52 5.19 -463.06 -2.40 -15.92 16
11 C 0.12 3.01 4.97 86.38 0.43 3.44 16
12 C 0.12 3.77 0.95 -9.40 -0.01 3.76 16
13 O -0.55 -16.96 13.18 -148.98 -1.96 -18.92 16
14 C -0.12 -4.46 6.16 31.78 0.20 -4.26 16
15 C 0.19 9.43 5.37 86.73 0.47 9.90 16
16 N -0.62 -30.78 3.39 -692.00 -2.35 -33.13 16
17 C -0.24 -13.01 10.28 84.03 0.86 -12.15 16
18 H 0.09 4.45 7.83 -2.91 -0.02 4.43 16
19 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16
20 N -0.95 -57.80 10.31 21.65 0.22 -57.58 16
21 Si 0.98 45.25 29.55 68.60 2.03 47.27 16
22 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16
23 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16
24 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16
25 C 0.11 4.02 5.74 86.86 0.50 4.52 16
26 S 0.13 2.48 23.18 -56.49 -1.31 1.17 16
27 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16
28 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16
29 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16
30 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16
31 H 0.07 1.23 8.14 -2.38 -0.02 1.22 16
32 H 0.08 1.19 7.35 -2.39 -0.02 1.17 16
33 H 0.15 1.16 7.43 -2.39 -0.02 1.14 16
34 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16
35 H 0.41 5.60 7.31 -92.71 -0.68 4.92 16
36 H 0.07 1.93 8.00 -2.39 -0.02 1.91 16
37 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16
38 H 0.39 8.06 8.57 -74.06 -0.63 7.42 16
39 H 0.09 2.97 7.94 -2.39 -0.02 2.95 16
40 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16
41 H 0.01 0.42 7.51 -2.39 -0.02 0.40 16
42 H 0.01 0.42 7.38 -2.39 -0.02 0.41 16
43 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16
44 H 0.06 1.88 7.80 -2.39 -0.02 1.86 16
45 H 0.03 1.18 8.04 -2.39 -0.02 1.17 16
Total: -1.00 -80.42 383.21 -1.74 -82.16
By element:
Atomic # 1 Polarization: 16.32 SS G_CDS: -0.29 Total: 16.03 kcal
Atomic # 6 Polarization: 4.34 SS G_CDS: 6.26 Total: 10.61 kcal
Atomic # 7 Polarization: -114.14 SS G_CDS: -6.42 Total: -120.56 kcal
Atomic # 8 Polarization: -34.66 SS G_CDS: -2.01 Total: -36.67 kcal
Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal
Atomic # 16 Polarization: 2.48 SS G_CDS: -1.31 Total: 1.17 kcal
Total: -80.42 -1.74 -82.16 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001271168128.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.779 kcal
(2) G-P(sol) polarization free energy of solvation -80.419 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.640 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.737 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.156 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.377 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.20 seconds