Wall clock time and date at job start Tue Mar 31 2020 22:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29023 * 124.91083 * 2 1 4 4 C 1.31784 * 117.11890 * 179.97438 * 3 2 1 5 5 C 1.50706 * 122.74942 * 179.97438 * 4 3 2 6 6 C 1.33636 * 114.50324 * 0.02562 * 4 3 2 7 7 C 1.50699 * 126.03860 * 180.02562 * 6 4 3 8 8 C 1.50703 * 109.47625 * 89.99465 * 7 6 4 9 9 O 1.21285 * 119.99587 * 0.02562 * 8 7 6 10 10 N 1.34766 * 120.00188 * 179.97438 * 8 7 6 11 11 C 1.46509 * 119.99888 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47030 * 180.02562 * 11 10 8 13 13 O 1.42896 * 110.64138 * 298.31266 * 12 11 10 14 14 C 1.55153 * 110.71897 * 174.97856 * 12 11 10 15 15 C 1.55133 * 101.48713 * 205.96796 * 14 12 11 16 16 N 1.47426 * 104.72293 * 37.29373 * 15 14 12 17 17 C 1.36937 * 125.65054 * 155.81725 * 16 15 14 18 18 H 1.08003 * 119.99665 * 193.32094 * 17 16 15 19 19 C 1.38808 * 120.00102 * 13.32023 * 17 16 15 20 20 N 1.31624 * 119.99534 * 27.27128 * 19 17 16 21 21 Si 1.86798 * 120.00303 * 207.27163 * 19 17 16 22 22 H 1.48497 * 109.46783 * 90.00165 * 21 19 17 23 23 H 1.48498 * 109.47016 * 210.00269 * 21 19 17 24 24 H 1.48497 * 109.46989 * 329.99865 * 21 19 17 25 25 C 1.47027 * 108.69863 * 335.55631 * 16 15 14 26 26 S 1.70974 * 124.91604 * 180.31479 * 2 1 3 27 27 H 1.09004 * 109.47455 * 90.02838 * 1 2 3 28 28 H 1.09002 * 109.47051 * 210.02484 * 1 2 3 29 29 H 1.08993 * 109.47605 * 330.02529 * 1 2 3 30 30 H 1.08998 * 109.46941 * 270.00751 * 5 4 3 31 31 H 1.09002 * 109.46449 * 30.00149 * 5 4 3 32 32 H 1.08994 * 109.47292 * 150.00378 * 5 4 3 33 33 H 1.08998 * 109.47403 * 329.99347 * 7 6 4 34 34 H 1.09003 * 109.47071 * 209.99790 * 7 6 4 35 35 H 0.96997 * 120.00220 * 0.02562 * 10 8 7 36 36 H 1.08998 * 109.46679 * 60.00359 * 11 10 8 37 37 H 1.09003 * 109.46881 * 300.00475 * 11 10 8 38 38 H 0.96704 * 114.00327 * 61.69122 * 13 12 11 39 39 H 1.09004 * 111.00358 * 324.20625 * 14 12 11 40 40 H 1.08996 * 111.01160 * 88.06037 * 14 12 11 41 41 H 1.08997 * 110.49809 * 278.45562 * 15 14 12 42 42 H 1.08997 * 110.34425 * 156.05535 * 15 14 12 43 43 H 0.97002 * 120.00050 * 5.85271 * 20 19 17 44 44 H 1.09002 * 109.88426 * 120.70564 * 25 16 15 45 45 H 1.09004 * 109.87904 * 241.86905 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2454 1.0580 0.0000 4 6 3.5511 0.8794 0.0005 5 6 4.5307 2.0246 0.0000 6 6 3.9354 -0.4005 0.0004 7 6 5.3574 -0.8993 0.0015 8 6 5.8304 -1.0659 1.4227 9 8 5.0858 -0.8057 2.3440 10 7 7.0803 -1.5050 1.6698 11 6 7.5403 -1.6664 3.0514 12 6 8.9840 -2.1729 3.0524 13 8 9.0700 -3.4507 2.4184 14 6 9.5431 -2.2345 4.4984 15 6 11.0666 -2.0843 4.2472 16 7 11.1699 -1.1214 3.1356 17 6 12.2532 -0.3291 2.8641 18 1 12.1610 0.4917 2.1682 19 6 13.4698 -0.5808 3.4833 20 7 13.7676 -1.8008 3.8774 21 14 14.6842 0.8118 3.7573 22 1 14.4254 1.4418 5.0769 23 1 16.0683 0.2745 3.7282 24 1 14.5244 1.8262 2.6845 25 6 9.9194 -1.1574 2.3631 26 16 2.4856 -1.4020 -0.0077 27 1 -0.3634 -0.0005 -1.0277 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8901 0.5134 30 1 4.7670 2.3001 -1.0278 31 1 4.0903 2.8795 0.5132 32 1 5.4430 1.7227 0.5143 33 1 5.9953 -0.1797 -0.5116 34 1 5.4062 -1.8593 -0.5126 35 1 7.6757 -1.7134 0.9330 36 1 6.9022 -2.3856 3.5650 37 1 7.4920 -0.7061 3.5649 38 1 8.8033 -3.4474 1.4889 39 1 9.1599 -1.4108 5.1008 40 1 9.3185 -3.1942 4.9637 41 1 11.5025 -3.0415 3.9616 42 1 11.5603 -1.6917 5.1361 43 1 13.1763 -2.5385 3.6603 44 1 9.4570 -0.1703 2.3600 45 1 10.1241 -1.4764 1.3411 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271168129.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:52 Heat of formation + Delta-G solvation = -22.763344 kcal Electronic energy + Delta-G solvation = -26996.756993 eV Core-core repulsion = 23141.612986 eV Total energy + Delta-G solvation = -3855.144007 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.49586 -39.77620 -38.62210 -35.45760 -34.31784 -34.10972 -32.31610 -31.21098 -29.59149 -29.39984 -28.46054 -26.17517 -25.14558 -23.61920 -22.97398 -21.11514 -20.17006 -20.13916 -19.13353 -18.21749 -17.80335 -17.50899 -16.60740 -15.85807 -15.68590 -15.33281 -14.99224 -14.64974 -14.32097 -14.00379 -13.80892 -13.75836 -13.66771 -13.48425 -13.37606 -13.13694 -13.00622 -12.81416 -12.66997 -12.30518 -12.25500 -12.12590 -11.85782 -11.35631 -11.06860 -10.79812 -10.68635 -10.52006 -10.45576 -10.10247 -10.05669 -9.86755 -9.77914 -9.51048 -9.44021 -9.22421 -8.78376 -8.46001 -7.01453 -6.12859 -3.17053 0.42934 1.08619 1.49058 2.44534 2.50317 3.03738 3.49045 3.51691 3.67809 3.80143 4.27104 4.31597 4.47892 4.61557 4.65198 4.69580 4.80727 5.00247 5.00585 5.06665 5.07563 5.15598 5.17451 5.27116 5.37251 5.44557 5.48021 5.56746 5.69113 5.71190 5.80621 5.96071 6.05880 6.11761 6.19827 6.26208 6.37479 6.42579 6.93145 7.04679 7.25645 7.52349 7.70840 7.75754 8.02279 8.43458 8.97478 9.77288 10.30175 11.20406 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022677 B = 0.002236 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.425671 B =12518.218722 C =13288.956387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.045 3.955 3 N -0.471 5.471 4 C 0.080 3.920 5 C -0.080 4.080 6 C -0.208 4.208 7 C -0.064 4.064 8 C 0.513 3.487 9 O -0.528 6.528 10 N -0.726 5.726 11 C 0.106 3.894 12 C 0.106 3.894 13 O -0.543 6.543 14 C -0.120 4.120 15 C 0.148 3.852 16 N -0.600 5.600 17 C -0.340 4.340 18 H 0.067 0.933 19 C -0.025 4.025 20 N -0.919 5.919 21 Si 1.068 2.932 22 H -0.293 1.293 23 H -0.290 1.290 24 H -0.293 1.293 25 C 0.117 3.883 26 S 0.127 5.873 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.399 0.601 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.366 0.634 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.032 0.968 42 H 0.056 0.944 43 H 0.271 0.729 44 H 0.033 0.967 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.817 0.087 -10.288 25.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.232 4.232 3 N -0.186 5.186 4 C -0.052 4.052 5 C -0.139 4.139 6 C -0.329 4.329 7 C -0.106 4.106 8 C 0.298 3.702 9 O -0.404 6.404 10 N -0.379 5.379 11 C -0.018 4.018 12 C 0.064 3.936 13 O -0.348 6.348 14 C -0.158 4.158 15 C 0.022 3.978 16 N -0.327 5.327 17 C -0.467 4.467 18 H 0.084 0.916 19 C -0.227 4.227 20 N -0.560 5.560 21 Si 0.898 3.102 22 H -0.220 1.220 23 H -0.216 1.216 24 H -0.219 1.219 25 C -0.010 4.010 26 S 0.383 5.617 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.134 0.866 34 H 0.125 0.875 35 H 0.234 0.766 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.213 0.787 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.050 0.950 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.051 0.949 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -23.098 -0.011 -8.366 24.566 hybrid contribution -0.761 0.341 -1.687 1.882 sum -23.858 0.330 -10.053 25.892 Atomic orbital electron populations 1.20436 0.85183 1.04279 1.03781 1.26901 1.01648 0.91097 1.03594 1.66128 1.04423 1.31656 1.16421 1.20098 0.90211 0.93941 1.00921 1.20378 0.95985 0.94829 1.02746 1.24885 0.98340 0.95751 1.13925 1.20043 0.90958 1.04118 0.95500 1.20409 0.81642 0.77097 0.91032 1.90742 1.54405 1.49111 1.46096 1.45947 1.14333 1.68260 1.09358 1.22048 0.95035 1.02147 0.82531 1.22512 0.91385 0.83731 0.95953 1.86618 1.90231 1.30110 1.27797 1.22876 0.98647 1.01983 0.92342 1.21600 0.90816 0.93414 0.91943 1.44503 1.13161 1.47104 1.27966 1.19777 0.89071 1.08216 1.29634 0.91553 1.25748 0.96353 1.01150 0.99436 1.70749 1.37930 0.98785 1.48514 0.83464 0.75888 0.74612 0.76208 1.22012 1.21591 1.21929 1.21943 0.88707 0.95836 0.94467 1.83825 0.97363 1.12146 1.68318 0.89626 0.90102 0.89258 0.90524 0.90403 0.90790 0.86550 0.87490 0.76632 0.90668 0.90253 0.78726 0.90100 0.90567 0.94989 0.92603 0.91727 0.94911 0.95792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.46 36.01 0.38 -0.11 16 2 C 0.05 0.47 7.39 -13.46 -0.10 0.37 16 3 N -0.47 -5.87 10.53 -8.06 -0.08 -5.95 16 4 C 0.08 0.95 6.74 -84.22 -0.57 0.39 16 5 C -0.08 -0.79 9.82 36.01 0.35 -0.43 16 6 C -0.21 -2.26 5.08 -35.92 -0.18 -2.44 16 7 C -0.06 -0.55 5.63 -29.03 -0.16 -0.72 16 8 C 0.51 6.13 7.82 -10.99 -0.09 6.05 16 9 O -0.53 -8.55 16.03 5.55 0.09 -8.46 16 10 N -0.73 -8.00 5.17 -60.29 -0.31 -8.31 16 11 C 0.11 1.45 4.73 -4.04 -0.02 1.43 16 12 C 0.11 1.69 0.91 -88.79 -0.08 1.61 16 13 O -0.54 -8.44 13.10 -35.23 -0.46 -8.90 16 14 C -0.12 -2.14 6.27 -24.46 -0.15 -2.29 16 15 C 0.15 3.43 5.22 -2.41 -0.01 3.42 16 16 N -0.60 -14.94 3.33 -169.93 -0.57 -15.50 16 17 C -0.34 -9.48 10.05 -15.06 -0.15 -9.64 16 18 H 0.07 1.84 7.96 -52.48 -0.42 1.42 16 19 C -0.03 -0.72 5.09 -17.43 -0.09 -0.81 16 20 N -0.92 -27.73 12.82 55.49 0.71 -27.02 16 21 Si 1.07 25.30 30.00 -169.99 -5.10 20.20 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.12 2.26 6.02 -3.06 -0.02 2.24 16 26 S 0.13 1.24 23.18 -107.50 -2.49 -1.25 16 27 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.71 7.35 -51.93 -0.38 0.33 16 33 H 0.12 0.76 7.43 -51.93 -0.39 0.38 16 34 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.40 3.44 7.38 -40.82 -0.30 3.14 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.08 1.17 8.13 -51.93 -0.42 0.75 16 38 H 0.37 4.12 8.12 45.56 0.37 4.49 16 39 H 0.08 1.35 8.04 -51.93 -0.42 0.93 16 40 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.03 0.81 6.84 -51.93 -0.36 0.46 16 42 H 0.06 1.42 7.73 -51.93 -0.40 1.02 16 43 H 0.27 8.21 5.83 -40.82 -0.24 7.98 16 44 H 0.03 0.63 7.82 -51.93 -0.41 0.23 16 45 H 0.02 0.46 8.05 -51.93 -0.42 0.04 16 LS Contribution 382.54 15.07 5.76 5.76 Total: -1.00 -36.64 382.54 -9.30 -45.93 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.95 Total: 4.42 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -0.89 Total: -0.92 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.25 Total: -56.79 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.37 Total: -17.35 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.10 Total: 20.20 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.49 Total: -1.25 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.64 -9.30 -45.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271168129.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.169 kcal (2) G-P(sol) polarization free energy of solvation -36.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds