Wall clock time and date at job start Tue Mar 31 2020 22:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29023 * 124.91083 * 2 1 4 4 C 1.31784 * 117.11890 * 179.97438 * 3 2 1 5 5 C 1.50706 * 122.74942 * 179.97438 * 4 3 2 6 6 C 1.33636 * 114.50324 * 0.02562 * 4 3 2 7 7 C 1.50699 * 126.03860 * 180.02562 * 6 4 3 8 8 C 1.50703 * 109.47625 * 89.99465 * 7 6 4 9 9 O 1.21285 * 119.99587 * 0.02562 * 8 7 6 10 10 N 1.34766 * 120.00188 * 179.97438 * 8 7 6 11 11 C 1.46509 * 119.99888 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47030 * 180.02562 * 11 10 8 13 13 O 1.42896 * 110.64138 * 298.31266 * 12 11 10 14 14 C 1.55153 * 110.71897 * 174.97856 * 12 11 10 15 15 C 1.55133 * 101.48713 * 205.96796 * 14 12 11 16 16 N 1.47426 * 104.72293 * 37.29373 * 15 14 12 17 17 C 1.36937 * 125.65054 * 155.81725 * 16 15 14 18 18 H 1.08003 * 119.99665 * 193.32094 * 17 16 15 19 19 C 1.38808 * 120.00102 * 13.32023 * 17 16 15 20 20 N 1.31624 * 119.99534 * 27.27128 * 19 17 16 21 21 Si 1.86798 * 120.00303 * 207.27163 * 19 17 16 22 22 H 1.48497 * 109.46783 * 90.00165 * 21 19 17 23 23 H 1.48498 * 109.47016 * 210.00269 * 21 19 17 24 24 H 1.48497 * 109.46989 * 329.99865 * 21 19 17 25 25 C 1.47027 * 108.69863 * 335.55631 * 16 15 14 26 26 S 1.70974 * 124.91604 * 180.31479 * 2 1 3 27 27 H 1.09004 * 109.47455 * 90.02838 * 1 2 3 28 28 H 1.09002 * 109.47051 * 210.02484 * 1 2 3 29 29 H 1.08993 * 109.47605 * 330.02529 * 1 2 3 30 30 H 1.08998 * 109.46941 * 270.00751 * 5 4 3 31 31 H 1.09002 * 109.46449 * 30.00149 * 5 4 3 32 32 H 1.08994 * 109.47292 * 150.00378 * 5 4 3 33 33 H 1.08998 * 109.47403 * 329.99347 * 7 6 4 34 34 H 1.09003 * 109.47071 * 209.99790 * 7 6 4 35 35 H 0.96997 * 120.00220 * 0.02562 * 10 8 7 36 36 H 1.08998 * 109.46679 * 60.00359 * 11 10 8 37 37 H 1.09003 * 109.46881 * 300.00475 * 11 10 8 38 38 H 0.96704 * 114.00327 * 61.69122 * 13 12 11 39 39 H 1.09004 * 111.00358 * 324.20625 * 14 12 11 40 40 H 1.08996 * 111.01160 * 88.06037 * 14 12 11 41 41 H 1.08997 * 110.49809 * 278.45562 * 15 14 12 42 42 H 1.08997 * 110.34425 * 156.05535 * 15 14 12 43 43 H 0.97002 * 120.00050 * 5.85271 * 20 19 17 44 44 H 1.09002 * 109.88426 * 120.70564 * 25 16 15 45 45 H 1.09004 * 109.87904 * 241.86905 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2454 1.0580 0.0000 4 6 3.5511 0.8794 0.0005 5 6 4.5307 2.0246 0.0000 6 6 3.9354 -0.4005 0.0004 7 6 5.3574 -0.8993 0.0015 8 6 5.8304 -1.0659 1.4227 9 8 5.0858 -0.8057 2.3440 10 7 7.0803 -1.5050 1.6698 11 6 7.5403 -1.6664 3.0514 12 6 8.9840 -2.1729 3.0524 13 8 9.0700 -3.4507 2.4184 14 6 9.5431 -2.2345 4.4984 15 6 11.0666 -2.0843 4.2472 16 7 11.1699 -1.1214 3.1356 17 6 12.2532 -0.3291 2.8641 18 1 12.1610 0.4917 2.1682 19 6 13.4698 -0.5808 3.4833 20 7 13.7676 -1.8008 3.8774 21 14 14.6842 0.8118 3.7573 22 1 14.4254 1.4418 5.0769 23 1 16.0683 0.2745 3.7282 24 1 14.5244 1.8262 2.6845 25 6 9.9194 -1.1574 2.3631 26 16 2.4856 -1.4020 -0.0077 27 1 -0.3634 -0.0005 -1.0277 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8901 0.5134 30 1 4.7670 2.3001 -1.0278 31 1 4.0903 2.8795 0.5132 32 1 5.4430 1.7227 0.5143 33 1 5.9953 -0.1797 -0.5116 34 1 5.4062 -1.8593 -0.5126 35 1 7.6757 -1.7134 0.9330 36 1 6.9022 -2.3856 3.5650 37 1 7.4920 -0.7061 3.5649 38 1 8.8033 -3.4474 1.4889 39 1 9.1599 -1.4108 5.1008 40 1 9.3185 -3.1942 4.9637 41 1 11.5025 -3.0415 3.9616 42 1 11.5603 -1.6917 5.1361 43 1 13.1763 -2.5385 3.6603 44 1 9.4570 -0.1703 2.3600 45 1 10.1241 -1.4764 1.3411 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271168129.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:52 Heat of formation + Delta-G solvation = -50.986625 kcal Electronic energy + Delta-G solvation = -26997.980846 eV Core-core repulsion = 23141.612986 eV Total energy + Delta-G solvation = -3856.367861 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.40723 -40.79183 -39.89851 -37.08245 -35.39346 -34.85373 -34.14413 -32.01996 -31.22749 -30.13813 -29.82991 -27.46896 -26.53043 -25.11215 -23.68099 -22.49564 -21.60004 -21.48837 -19.97248 -19.60140 -18.95597 -18.70386 -17.74831 -16.96659 -16.62393 -16.44231 -16.05981 -15.93521 -15.66187 -15.61292 -15.08810 -14.96314 -14.81981 -14.48693 -14.37743 -14.26723 -14.10717 -13.78551 -13.49446 -13.38661 -13.17838 -12.92234 -12.84582 -12.76004 -12.55072 -12.51671 -12.26879 -12.08491 -11.90927 -11.89113 -11.59340 -11.15021 -11.05477 -10.64215 -10.54658 -10.24228 -10.21171 -9.52391 -9.06193 -8.33996 -5.34029 -0.32416 0.37526 0.73814 1.54077 1.57402 1.65178 1.69857 1.82304 2.12283 2.62380 3.02920 3.14516 3.20450 3.30194 3.54427 3.58274 3.73729 3.79783 3.91560 4.00321 4.05434 4.34530 4.37399 4.46048 4.49069 4.52629 4.59573 4.63656 4.68746 4.70021 4.78483 4.79634 4.83276 4.93823 4.94164 5.05943 5.07586 5.23052 5.26081 5.32881 5.62672 6.28867 6.39277 6.70437 6.76500 6.86768 7.13188 7.67930 8.25177 8.99083 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022677 B = 0.002236 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.425671 B =12518.218722 C =13288.956387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.037 3.963 3 N -0.505 5.505 4 C 0.058 3.942 5 C -0.078 4.078 6 C -0.223 4.223 7 C -0.058 4.058 8 C 0.516 3.484 9 O -0.573 6.573 10 N -0.716 5.716 11 C 0.121 3.879 12 C 0.128 3.872 13 O -0.554 6.554 14 C -0.112 4.112 15 C 0.151 3.849 16 N -0.624 5.624 17 C -0.345 4.345 18 H 0.066 0.934 19 C -0.082 4.082 20 N -0.949 5.949 21 Si 1.119 2.881 22 H -0.286 1.286 23 H -0.295 1.295 24 H -0.270 1.270 25 C 0.113 3.887 26 S 0.142 5.858 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.414 0.586 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.387 0.613 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.005 0.995 42 H 0.022 0.978 43 H 0.256 0.744 44 H 0.041 0.959 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.302 0.239 -11.688 27.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.240 4.240 3 N -0.221 5.221 4 C -0.074 4.074 5 C -0.137 4.137 6 C -0.344 4.344 7 C -0.100 4.100 8 C 0.303 3.697 9 O -0.452 6.452 10 N -0.369 5.369 11 C -0.003 4.003 12 C 0.086 3.914 13 O -0.361 6.361 14 C -0.151 4.151 15 C 0.026 3.974 16 N -0.352 5.352 17 C -0.473 4.473 18 H 0.083 0.917 19 C -0.277 4.277 20 N -0.593 5.593 21 Si 0.943 3.057 22 H -0.213 1.213 23 H -0.221 1.221 24 H -0.194 1.194 25 C -0.012 4.012 26 S 0.399 5.601 27 H 0.122 0.878 28 H 0.117 0.883 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.159 0.841 34 H 0.155 0.845 35 H 0.251 0.749 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.237 0.763 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.022 0.978 42 H 0.041 0.959 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -24.611 0.135 -9.826 26.500 hybrid contribution -0.382 0.256 -1.306 1.384 sum -24.993 0.391 -11.132 27.362 Atomic orbital electron populations 1.20616 0.82870 1.05088 1.05198 1.27559 1.03192 0.90943 1.02296 1.66170 1.05040 1.32877 1.18006 1.20449 0.90509 0.94958 1.01453 1.20398 0.95502 0.94068 1.03749 1.25174 0.99612 0.95745 1.13849 1.20150 0.90046 1.06372 0.93451 1.20932 0.81083 0.75796 0.91926 1.90732 1.55605 1.51083 1.47751 1.45803 1.14507 1.67875 1.08739 1.21708 0.93066 1.01534 0.84038 1.22154 0.91923 0.83199 0.94144 1.86589 1.90485 1.29447 1.29625 1.22802 0.94516 1.03510 0.94234 1.21433 0.94225 0.91487 0.90272 1.44777 1.13983 1.46941 1.29461 1.20066 0.90042 1.08273 1.28913 0.91661 1.27139 0.98665 1.02340 0.99573 1.70866 1.38309 0.99346 1.50762 0.82799 0.73448 0.72431 0.77006 1.21257 1.22126 1.19443 1.22149 0.87186 0.97325 0.94545 1.83683 0.96916 1.11652 1.67880 0.87794 0.88342 0.89344 0.88745 0.91313 0.90791 0.84123 0.84481 0.74947 0.90378 0.91172 0.76331 0.88768 0.88858 0.97769 0.95946 0.93282 0.94154 0.94938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.46 71.24 0.75 -0.12 16 2 C 0.04 0.72 7.39 88.52 0.65 1.38 16 3 N -0.50 -12.27 10.53 -179.40 -1.89 -14.16 16 4 C 0.06 1.32 6.74 41.52 0.28 1.60 16 5 C -0.08 -1.45 9.82 71.24 0.70 -0.76 16 6 C -0.22 -4.44 5.08 24.64 0.13 -4.31 16 7 C -0.06 -0.84 5.63 29.10 0.16 -0.67 16 8 C 0.52 11.07 7.82 87.66 0.69 11.76 16 9 O -0.57 -17.74 16.03 -3.05 -0.05 -17.79 16 10 N -0.72 -13.68 5.17 -463.05 -2.40 -16.08 16 11 C 0.12 3.02 4.73 86.38 0.41 3.43 16 12 C 0.13 3.83 0.91 -9.61 -0.01 3.82 16 13 O -0.55 -15.86 13.10 -148.98 -1.95 -17.81 16 14 C -0.11 -3.89 6.27 32.06 0.20 -3.69 16 15 C 0.15 7.20 5.22 86.93 0.45 7.66 16 16 N -0.62 -31.19 3.33 -691.53 -2.30 -33.49 16 17 C -0.34 -19.34 10.05 84.03 0.84 -18.50 16 18 H 0.07 3.60 7.96 -2.91 -0.02 3.57 16 19 C -0.08 -4.70 5.09 84.86 0.43 -4.27 16 20 N -0.95 -58.98 12.82 21.65 0.28 -58.70 16 21 Si 1.12 51.27 30.00 68.60 2.06 53.33 16 22 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 25 C 0.11 4.21 6.02 86.73 0.52 4.73 16 26 S 0.14 2.53 23.18 -56.49 -1.31 1.22 16 27 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.34 7.35 -2.39 -0.02 1.32 16 33 H 0.14 1.34 7.43 -2.39 -0.02 1.32 16 34 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.41 5.62 7.38 -92.71 -0.68 4.94 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.07 1.93 8.13 -2.39 -0.02 1.91 16 38 H 0.39 7.44 8.12 -74.05 -0.60 6.84 16 39 H 0.09 3.02 8.04 -2.39 -0.02 3.00 16 40 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 41 H 0.00 0.24 6.84 -2.39 -0.02 0.22 16 42 H 0.02 1.18 7.73 -2.39 -0.02 1.16 16 43 H 0.26 16.21 5.83 -92.71 -0.54 15.67 16 44 H 0.04 1.46 7.82 -2.39 -0.02 1.45 16 45 H 0.03 1.17 8.05 -2.39 -0.02 1.15 16 Total: -1.00 -81.76 382.54 -1.38 -83.14 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -0.03 Total: 18.28 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 6.21 Total: 2.05 kcal Atomic # 7 Polarization: -116.11 SS G_CDS: -6.31 Total: -122.42 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -2.00 Total: -35.60 kcal Atomic # 14 Polarization: 51.27 SS G_CDS: 2.06 Total: 53.33 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -1.31 Total: 1.22 kcal Total: -81.76 -1.38 -83.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271168129.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.154 kcal (2) G-P(sol) polarization free energy of solvation -81.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds