Wall clock time and date at job start Tue Mar 31 2020 22:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30171 * 126.80798 * 2 1 4 4 O 1.20918 * 111.60590 * 180.24785 * 3 2 1 5 5 C 1.34044 * 111.56930 * 359.74955 * 4 3 2 6 6 C 1.50697 * 126.77935 * 179.97438 * 5 4 3 7 7 C 1.35454 * 106.44320 * 359.97438 * 5 4 3 8 8 C 1.50695 * 128.00527 * 179.97438 * 7 5 4 9 9 N 1.46899 * 109.47442 * 89.99713 * 8 7 5 10 10 C 1.46899 * 110.99934 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47025 * 179.97438 * 10 9 8 12 12 C 1.31005 * 119.99932 * 124.72105 * 11 10 9 13 13 C 1.50699 * 119.99776 * 180.27660 * 12 11 10 14 14 N 1.46500 * 109.46915 * 125.00274 * 13 12 11 15 15 C 1.34772 * 120.00015 * 179.97438 * 14 13 12 16 16 O 1.21285 * 120.00150 * 0.02562 * 15 14 13 17 17 C 1.50705 * 120.00442 * 179.97438 * 15 14 13 18 18 S 1.80991 * 109.47476 * 180.02562 * 17 15 14 19 19 C 1.76206 * 100.00146 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99385 * 0.02562 * 19 18 17 21 21 C 1.38795 * 120.00017 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00219 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99869 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47022 * 60.00086 * 23 21 19 25 25 H 1.48500 * 109.47232 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47258 * 300.00261 * 23 21 19 27 27 H 1.09001 * 109.47470 * 270.16643 * 1 2 3 28 28 H 1.09011 * 109.46827 * 30.16591 * 1 2 3 29 29 H 1.08999 * 109.47585 * 150.16239 * 1 2 3 30 30 H 1.08992 * 109.47614 * 270.00219 * 6 5 4 31 31 H 1.09002 * 109.46469 * 30.00697 * 6 5 4 32 32 H 1.08999 * 109.46760 * 149.99887 * 6 5 4 33 33 H 1.09004 * 109.47245 * 329.98973 * 8 7 5 34 34 H 1.09005 * 109.46974 * 209.99919 * 8 7 5 35 35 H 1.00903 * 110.99958 * 56.04583 * 9 8 7 36 36 H 1.09002 * 109.47399 * 59.99851 * 10 9 8 37 37 H 1.08999 * 109.47272 * 299.99791 * 10 9 8 38 38 H 1.08002 * 120.00299 * 305.00441 * 11 10 9 39 39 H 1.08002 * 119.99713 * 0.27722 * 12 11 10 40 40 H 1.09005 * 109.46922 * 245.00183 * 13 12 11 41 41 H 1.08994 * 109.47613 * 5.00521 * 13 12 11 42 42 H 0.97006 * 120.00083 * 0.02562 * 14 13 12 43 43 H 1.08994 * 109.46999 * 300.00958 * 17 15 14 44 44 H 1.09004 * 109.46529 * 60.00085 * 17 15 14 45 45 H 0.96993 * 120.00078 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0422 0.0000 4 8 3.4537 0.7251 -0.0049 5 6 3.6024 -0.6070 -0.0034 6 6 4.9020 -1.3699 -0.0087 7 6 2.3538 -1.1322 0.0038 8 6 1.9589 -2.5864 0.0077 9 7 1.8378 -3.0573 1.3939 10 6 1.4526 -4.4742 1.4368 11 6 1.3391 -4.9207 2.8717 12 6 0.2274 -5.4634 3.3028 13 6 0.1118 -5.9042 4.7393 14 7 -1.0570 -5.2685 5.3525 15 6 -1.3607 -5.5176 6.6417 16 8 -0.6662 -6.2676 7.2944 17 6 -2.5627 -4.8632 7.2728 18 16 -2.7017 -5.3926 8.9980 19 6 -4.1465 -4.5041 9.4753 20 1 -4.6517 -3.8712 8.7609 21 6 -4.6351 -4.6177 10.7694 22 7 -4.0196 -5.3895 11.6401 23 14 -6.1664 -3.6751 11.2757 24 1 -7.3086 -4.0918 10.4230 25 1 -6.4792 -3.9659 12.6979 26 1 -5.9293 -2.2188 11.1082 27 1 -0.3634 0.0030 1.0276 28 1 -0.3633 0.8886 -0.5165 29 1 -0.3634 -0.8914 -0.5113 30 1 5.2102 -1.5555 -1.0375 31 1 5.6684 -0.7854 0.5005 32 1 4.7674 -2.3204 0.5075 33 1 2.7198 -3.1710 -0.5095 34 1 1.0021 -2.7044 -0.5010 35 1 1.1849 -2.4895 1.9130 36 1 2.2097 -5.0722 0.9294 37 1 0.4922 -4.6049 0.9382 38 1 2.1726 -4.7891 3.5458 39 1 -0.6061 -5.5949 2.6288 40 1 -0.0013 -6.9876 4.7789 41 1 1.0106 -5.6125 5.2824 42 1 -1.6128 -4.6688 4.8304 43 1 -2.4491 -3.7799 7.2335 44 1 -3.4618 -5.1541 6.7295 45 1 -4.3613 -5.4692 12.5443 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273861305.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:04 Heat of formation + Delta-G solvation = 30.747397 kcal Electronic energy + Delta-G solvation = -24850.428534 eV Core-core repulsion = 20997.604927 eV Total energy + Delta-G solvation = -3852.823607 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.30206 -39.19595 -37.78447 -36.02130 -34.77236 -33.94733 -32.70242 -32.42670 -29.89832 -29.14640 -28.68737 -27.36217 -25.64246 -25.31468 -23.17129 -21.92474 -20.64382 -20.55991 -19.78541 -18.05351 -17.86404 -17.37988 -16.72910 -16.25215 -15.81938 -15.48256 -15.25973 -15.01053 -14.80382 -14.43817 -14.14543 -13.92327 -13.90040 -13.56739 -13.55685 -13.51242 -13.18079 -13.03163 -12.83787 -12.66587 -12.55900 -12.50908 -12.27878 -11.75827 -11.41703 -11.32189 -11.04665 -11.03905 -10.77205 -10.30666 -9.86189 -9.80605 -9.60990 -9.30673 -9.06283 -8.99859 -8.86068 -8.24160 -6.50111 -6.21451 -3.92248 1.05208 1.62088 1.81638 2.71129 3.08891 3.09726 3.23464 3.27983 3.33781 3.72136 3.79210 3.84453 4.02454 4.20536 4.29282 4.43336 4.49145 4.68607 4.78699 4.91830 4.94672 4.96905 4.98324 5.04514 5.09823 5.13506 5.15264 5.21679 5.28371 5.32005 5.37158 5.49074 5.51780 5.58505 5.72244 5.80118 5.88577 6.13278 6.20826 6.29626 6.43655 6.61614 6.82047 7.59186 7.70106 7.90511 8.35011 8.60268 9.23617 10.85919 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013891 B = 0.001603 C = 0.001492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.201442 B =17458.107373 C =18764.437252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.024 3.976 3 N -0.367 5.367 4 O 0.095 5.905 5 C -0.008 4.008 6 C -0.076 4.076 7 C -0.206 4.206 8 C 0.139 3.861 9 N -0.682 5.682 10 C 0.088 3.912 11 C -0.138 4.138 12 C -0.163 4.163 13 C 0.150 3.850 14 N -0.736 5.736 15 C 0.531 3.469 16 O -0.518 6.518 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.347 0.653 36 H 0.083 0.917 37 H 0.037 0.963 38 H 0.120 0.880 39 H 0.114 0.886 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.398 0.602 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.133 6.085 -30.067 33.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.135 4.135 3 N -0.073 5.073 4 O 0.031 5.969 5 C -0.072 4.072 6 C -0.133 4.133 7 C -0.210 4.210 8 C 0.010 3.990 9 N -0.314 5.314 10 C -0.041 4.041 11 C -0.157 4.157 12 C -0.182 4.182 13 C 0.026 3.974 14 N -0.391 5.391 15 C 0.317 3.683 16 O -0.392 6.392 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.165 0.835 36 H 0.101 0.899 37 H 0.055 0.945 38 H 0.138 0.862 39 H 0.131 0.869 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 15.774 5.933 -28.717 33.297 hybrid contribution -3.096 1.069 -0.958 3.413 sum 12.677 7.002 -29.675 33.020 Atomic orbital electron populations 1.20190 0.86023 1.03718 1.03641 1.23476 0.98893 0.88596 1.02535 1.73868 0.89257 1.23904 1.20291 1.84819 1.21664 1.22642 1.67746 1.24323 0.98344 0.83621 1.00938 1.20393 0.89887 0.99149 1.03900 1.20756 0.91781 0.96890 1.11605 1.20065 1.00468 0.88266 0.90174 1.60468 1.55497 1.03047 1.12359 1.21021 0.99522 0.88992 0.94526 1.22834 0.98421 0.97796 0.96672 1.22993 0.98369 1.00272 0.96600 1.20261 0.89477 0.98050 0.89591 1.45983 1.30259 1.50421 1.12415 1.20333 0.85918 0.81148 0.80880 1.90706 1.51172 1.35711 1.61609 1.23530 0.97706 1.03497 1.05648 1.85400 1.37032 1.62042 0.98857 1.22828 1.13198 1.32609 0.99835 0.90979 1.24991 0.97750 0.95445 0.95383 1.70006 1.39203 1.36170 1.04890 0.86225 0.81739 0.79891 0.77645 1.19956 1.20796 1.19935 0.89904 0.90384 0.90258 0.89547 0.89745 0.88328 0.89574 0.93712 0.83497 0.89855 0.94499 0.86196 0.86850 0.90786 0.91139 0.76818 0.89221 0.89229 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.39 36.00 0.37 -0.09 16 2 C 0.02 0.21 7.33 -82.10 -0.60 -0.39 16 3 N -0.37 -3.95 12.07 33.42 0.40 -3.55 16 4 O 0.10 0.92 11.20 17.17 0.19 1.11 16 5 C -0.01 -0.06 7.49 -35.30 -0.26 -0.32 16 6 C -0.08 -0.28 10.25 36.00 0.37 0.09 16 7 C -0.21 -1.49 5.83 -104.42 -0.61 -2.10 16 8 C 0.14 0.73 5.93 -4.98 -0.03 0.70 16 9 N -0.68 -4.06 6.48 -116.34 -0.75 -4.82 16 10 C 0.09 0.47 6.12 -4.98 -0.03 0.44 16 11 C -0.14 -0.95 9.38 -36.03 -0.34 -1.29 16 12 C -0.16 -1.25 9.24 -36.03 -0.33 -1.58 16 13 C 0.15 1.68 6.11 -5.19 -0.03 1.65 16 14 N -0.74 -9.62 5.55 -61.47 -0.34 -9.96 16 15 C 0.53 9.89 7.85 -10.99 -0.09 9.80 16 16 O -0.52 -11.81 15.86 5.55 0.09 -11.72 16 17 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 18 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 19 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.20 13.22 55.49 0.73 -25.46 16 23 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.46 8.14 -51.92 -0.42 0.03 16 29 H 0.08 0.34 7.65 -51.93 -0.40 -0.06 16 30 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.10 0.33 8.05 -51.93 -0.42 -0.09 16 33 H 0.09 0.36 8.08 -51.93 -0.42 -0.06 16 34 H 0.04 0.21 7.65 -51.93 -0.40 -0.19 16 35 H 0.35 2.26 8.71 -39.29 -0.34 1.92 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.04 0.18 7.79 -51.93 -0.40 -0.23 16 38 H 0.12 0.92 7.84 -52.49 -0.41 0.51 16 39 H 0.11 0.73 7.84 -52.49 -0.41 0.32 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.86 7.79 -51.93 -0.40 0.45 16 42 H 0.40 4.02 8.46 -40.82 -0.35 3.67 16 43 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 44 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 45 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 404.03 15.07 6.09 6.09 Total: -1.00 -36.03 404.03 -8.86 -44.89 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.88 Total: -0.15 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -1.16 Total: -8.96 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: 0.04 Total: -43.79 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.28 Total: -10.61 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.03 -8.86 -44.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273861305.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.637 kcal (2) G-P(sol) polarization free energy of solvation -36.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds