Wall clock time and date at job start Tue Mar 31 2020 22:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30171 * 126.80798 * 2 1 4 4 O 1.20918 * 111.60590 * 180.24785 * 3 2 1 5 5 C 1.34044 * 111.56930 * 359.74955 * 4 3 2 6 6 C 1.50697 * 126.77935 * 179.97438 * 5 4 3 7 7 C 1.35454 * 106.44320 * 359.97438 * 5 4 3 8 8 C 1.50695 * 128.00527 * 179.97438 * 7 5 4 9 9 N 1.46899 * 109.47442 * 89.99713 * 8 7 5 10 10 C 1.46899 * 110.99934 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47025 * 179.97438 * 10 9 8 12 12 C 1.31005 * 119.99932 * 124.72105 * 11 10 9 13 13 C 1.50699 * 119.99776 * 180.27660 * 12 11 10 14 14 N 1.46500 * 109.46915 * 125.00274 * 13 12 11 15 15 C 1.34772 * 120.00015 * 179.97438 * 14 13 12 16 16 O 1.21285 * 120.00150 * 0.02562 * 15 14 13 17 17 C 1.50705 * 120.00442 * 179.97438 * 15 14 13 18 18 S 1.80991 * 109.47476 * 180.02562 * 17 15 14 19 19 C 1.76206 * 100.00146 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99385 * 0.02562 * 19 18 17 21 21 C 1.38795 * 120.00017 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00219 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99869 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47022 * 60.00086 * 23 21 19 25 25 H 1.48500 * 109.47232 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47258 * 300.00261 * 23 21 19 27 27 H 1.09001 * 109.47470 * 270.16643 * 1 2 3 28 28 H 1.09011 * 109.46827 * 30.16591 * 1 2 3 29 29 H 1.08999 * 109.47585 * 150.16239 * 1 2 3 30 30 H 1.08992 * 109.47614 * 270.00219 * 6 5 4 31 31 H 1.09002 * 109.46469 * 30.00697 * 6 5 4 32 32 H 1.08999 * 109.46760 * 149.99887 * 6 5 4 33 33 H 1.09004 * 109.47245 * 329.98973 * 8 7 5 34 34 H 1.09005 * 109.46974 * 209.99919 * 8 7 5 35 35 H 1.00903 * 110.99958 * 56.04583 * 9 8 7 36 36 H 1.09002 * 109.47399 * 59.99851 * 10 9 8 37 37 H 1.08999 * 109.47272 * 299.99791 * 10 9 8 38 38 H 1.08002 * 120.00299 * 305.00441 * 11 10 9 39 39 H 1.08002 * 119.99713 * 0.27722 * 12 11 10 40 40 H 1.09005 * 109.46922 * 245.00183 * 13 12 11 41 41 H 1.08994 * 109.47613 * 5.00521 * 13 12 11 42 42 H 0.97006 * 120.00083 * 0.02562 * 14 13 12 43 43 H 1.08994 * 109.46999 * 300.00958 * 17 15 14 44 44 H 1.09004 * 109.46529 * 60.00085 * 17 15 14 45 45 H 0.96993 * 120.00078 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0422 0.0000 4 8 3.4537 0.7251 -0.0049 5 6 3.6024 -0.6070 -0.0034 6 6 4.9020 -1.3699 -0.0087 7 6 2.3538 -1.1322 0.0038 8 6 1.9589 -2.5864 0.0077 9 7 1.8378 -3.0573 1.3939 10 6 1.4526 -4.4742 1.4368 11 6 1.3391 -4.9207 2.8717 12 6 0.2274 -5.4634 3.3028 13 6 0.1118 -5.9042 4.7393 14 7 -1.0570 -5.2685 5.3525 15 6 -1.3607 -5.5176 6.6417 16 8 -0.6662 -6.2676 7.2944 17 6 -2.5627 -4.8632 7.2728 18 16 -2.7017 -5.3926 8.9980 19 6 -4.1465 -4.5041 9.4753 20 1 -4.6517 -3.8712 8.7609 21 6 -4.6351 -4.6177 10.7694 22 7 -4.0196 -5.3895 11.6401 23 14 -6.1664 -3.6751 11.2757 24 1 -7.3086 -4.0918 10.4230 25 1 -6.4792 -3.9659 12.6979 26 1 -5.9293 -2.2188 11.1082 27 1 -0.3634 0.0030 1.0276 28 1 -0.3633 0.8886 -0.5165 29 1 -0.3634 -0.8914 -0.5113 30 1 5.2102 -1.5555 -1.0375 31 1 5.6684 -0.7854 0.5005 32 1 4.7674 -2.3204 0.5075 33 1 2.7198 -3.1710 -0.5095 34 1 1.0021 -2.7044 -0.5010 35 1 1.1849 -2.4895 1.9130 36 1 2.2097 -5.0722 0.9294 37 1 0.4922 -4.6049 0.9382 38 1 2.1726 -4.7891 3.5458 39 1 -0.6061 -5.5949 2.6288 40 1 -0.0013 -6.9876 4.7789 41 1 1.0106 -5.6125 5.2824 42 1 -1.6128 -4.6688 4.8304 43 1 -2.4491 -3.7799 7.2335 44 1 -3.4618 -5.1541 6.7295 45 1 -4.3613 -5.4692 12.5443 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273861305.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:03 Heat of formation + Delta-G solvation = 4.771115 kcal Electronic energy + Delta-G solvation = -24851.554950 eV Core-core repulsion = 20997.604927 eV Total energy + Delta-G solvation = -3853.950024 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.90736 -40.60605 -38.29670 -36.82979 -35.54515 -34.58864 -34.54499 -33.50191 -31.16703 -29.70020 -29.32706 -28.05899 -27.61558 -26.14036 -23.80582 -22.45631 -21.86387 -21.13974 -20.58920 -19.76441 -18.68378 -17.96305 -17.83473 -17.46534 -16.87801 -16.74840 -16.63468 -15.83718 -15.74103 -15.59104 -15.14054 -14.89749 -14.53829 -14.44643 -14.32053 -14.27480 -13.95980 -13.85854 -13.68871 -13.49452 -13.28259 -13.16912 -13.02638 -12.93979 -12.85796 -12.77564 -12.61627 -12.04206 -11.85623 -11.73795 -11.12742 -11.07048 -10.88884 -10.38337 -10.27732 -10.14397 -9.94605 -9.39247 -8.66783 -8.34232 -6.12647 0.50108 0.98001 1.21613 1.31509 1.44109 1.48950 1.59327 1.61012 2.22908 2.27536 2.45048 2.99714 3.22340 3.33350 3.37836 3.54703 3.78634 3.90576 4.00748 4.03460 4.12750 4.29837 4.38203 4.42428 4.51008 4.54117 4.57810 4.62952 4.63230 4.67846 4.73160 4.80604 4.82340 4.86424 4.90817 4.97215 5.16178 5.31102 5.37998 5.41821 5.63925 5.76474 6.02806 6.19864 6.36537 6.51769 7.06803 7.24412 7.31943 8.74730 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013891 B = 0.001603 C = 0.001492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.201442 B =17458.107373 C =18764.437252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.016 3.984 3 N -0.407 5.407 4 O 0.074 5.926 5 C -0.012 4.012 6 C -0.074 4.074 7 C -0.213 4.213 8 C 0.145 3.855 9 N -0.690 5.690 10 C 0.092 3.908 11 C -0.124 4.124 12 C -0.164 4.164 13 C 0.148 3.852 14 N -0.709 5.709 15 C 0.532 3.468 16 O -0.568 6.568 17 C -0.129 4.129 18 S -0.153 6.153 19 C -0.547 4.547 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.261 1.261 25 H -0.279 1.279 26 H -0.262 1.262 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.056 0.944 35 H 0.343 0.657 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.109 0.891 39 H 0.135 0.865 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.417 0.583 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.233 6.542 -32.520 35.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.143 4.143 3 N -0.117 5.117 4 O 0.013 5.987 5 C -0.076 4.076 6 C -0.131 4.131 7 C -0.217 4.217 8 C 0.016 3.984 9 N -0.322 5.322 10 C -0.036 4.036 11 C -0.143 4.143 12 C -0.183 4.183 13 C 0.025 3.975 14 N -0.363 5.363 15 C 0.318 3.682 16 O -0.447 6.447 17 C -0.280 4.280 18 S 0.074 5.926 19 C -0.695 4.695 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.186 1.186 25 H -0.204 1.204 26 H -0.187 1.187 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.108 0.892 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.160 0.840 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.127 0.873 39 H 0.153 0.847 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.254 0.746 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.894 6.408 -31.241 35.198 hybrid contribution -2.691 0.918 -0.329 2.863 sum 12.202 7.326 -31.570 34.630 Atomic orbital electron populations 1.20295 0.84490 1.04590 1.04144 1.24021 1.00090 0.88770 1.01442 1.73854 0.89934 1.25415 1.22504 1.84765 1.21459 1.24023 1.68406 1.25026 0.99913 0.82928 0.99733 1.20554 0.88357 0.98865 1.05302 1.21045 0.91444 0.97646 1.11560 1.20110 1.01455 0.86946 0.89900 1.60449 1.55599 1.03271 1.12841 1.21005 1.00657 0.88674 0.93221 1.22913 0.97593 0.96289 0.97551 1.22778 0.99599 1.01460 0.94489 1.20352 0.87881 0.97542 0.91683 1.45740 1.30521 1.49511 1.10503 1.20103 0.85143 0.80658 0.82335 1.90694 1.52637 1.38081 1.63251 1.23372 0.99603 1.04539 1.00525 1.85589 1.37846 1.63516 1.05641 1.23178 1.13183 1.32629 1.00522 0.89845 1.26137 1.01417 0.96336 0.95299 1.70177 1.41254 1.37961 1.05351 0.85003 0.77115 0.78541 0.77330 1.18596 1.20418 1.18694 0.89466 0.90666 0.88235 0.87610 0.89204 0.87607 0.88178 0.92606 0.83950 0.88757 0.93137 0.87266 0.84737 0.91665 0.92386 0.74613 0.87248 0.87047 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.39 71.24 0.74 -0.09 16 2 C 0.02 0.26 7.33 43.58 0.32 0.58 16 3 N -0.41 -8.93 12.07 -49.57 -0.60 -9.53 16 4 O 0.07 1.45 11.20 71.60 0.80 2.26 16 5 C -0.01 -0.16 7.49 25.04 0.19 0.03 16 6 C -0.07 -0.41 10.25 71.23 0.73 0.32 16 7 C -0.21 -2.76 5.83 -19.73 -0.12 -2.88 16 8 C 0.14 1.09 5.93 85.56 0.51 1.60 16 9 N -0.69 -6.29 6.48 -521.98 -3.38 -9.67 16 10 C 0.09 0.67 6.12 85.56 0.52 1.19 16 11 C -0.12 -1.38 9.38 25.64 0.24 -1.14 16 12 C -0.16 -2.06 9.24 25.64 0.24 -1.82 16 13 C 0.15 3.13 6.11 85.63 0.52 3.65 16 14 N -0.71 -17.21 5.55 -466.79 -2.59 -19.80 16 15 C 0.53 19.49 7.85 87.66 0.69 20.18 16 16 O -0.57 -26.48 15.86 -3.05 -0.05 -26.53 16 17 C -0.13 -5.07 6.16 71.24 0.44 -4.63 16 18 S -0.15 -8.52 20.57 -56.49 -1.16 -9.69 16 19 C -0.55 -31.25 9.50 67.95 0.65 -30.60 16 20 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 21 C 0.01 0.73 5.49 84.86 0.47 1.20 16 22 N -0.91 -56.11 13.22 21.65 0.29 -55.82 16 23 Si 1.00 43.51 29.55 68.60 2.03 45.54 16 24 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 25 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 26 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 27 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.10 0.61 7.65 -2.39 -0.02 0.59 16 30 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.11 0.46 8.05 -2.39 -0.02 0.44 16 33 H 0.10 0.49 8.08 -2.38 -0.02 0.47 16 34 H 0.06 0.32 7.65 -2.38 -0.02 0.30 16 35 H 0.34 3.62 8.71 -89.69 -0.78 2.84 16 36 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.05 0.27 7.79 -2.39 -0.02 0.25 16 38 H 0.11 1.49 7.84 -2.91 -0.02 1.47 16 39 H 0.13 1.19 7.84 -2.91 -0.02 1.17 16 40 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 41 H 0.06 1.39 7.79 -2.39 -0.02 1.37 16 42 H 0.42 7.11 8.46 -92.70 -0.78 6.32 16 43 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 44 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 45 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -81.67 404.03 0.91 -80.75 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -0.55 Total: 14.91 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 6.13 Total: -12.41 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -6.28 Total: -94.82 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: 0.75 Total: -24.28 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.69 kcal Total: -81.67 0.91 -80.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273861305.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.522 kcal (2) G-P(sol) polarization free energy of solvation -81.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds