Wall clock time and date at job start Tue Mar 31 2020 22:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37479 * 122.45020 * 2 1 4 4 C 1.36643 * 113.29695 * 180.02562 * 3 2 1 5 5 C 1.46586 * 125.45696 * 179.97438 * 4 3 2 6 6 O 1.21706 * 119.99958 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00168 * 180.02562 * 5 4 3 8 8 C 1.46495 * 120.00080 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.46996 * 35.00503 * 8 7 5 10 10 C 1.52994 * 109.47359 * 275.00294 * 8 7 5 11 11 C 1.53006 * 109.46914 * 154.99872 * 8 7 5 12 12 N 1.46898 * 109.47138 * 305.00206 * 11 8 7 13 13 C 1.46906 * 110.99888 * 180.02562 * 12 11 8 14 14 C 1.50699 * 109.47140 * 179.97438 * 13 12 11 15 15 O 1.21289 * 119.99678 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99614 * 180.02562 * 14 13 12 17 17 C 1.37097 * 119.99518 * 180.02562 * 16 14 13 18 18 H 1.08003 * 120.00058 * 359.97438 * 17 16 14 19 19 C 1.38949 * 120.00085 * 179.97438 * 17 16 14 20 20 N 1.31416 * 119.99807 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00409 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47138 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47229 * 119.99992 * 21 19 17 24 24 H 1.48497 * 109.47429 * 239.99972 * 21 19 17 25 25 S 1.75834 * 109.08483 * 0.26395 * 4 3 2 26 26 C 1.33815 * 122.45075 * 180.02562 * 2 1 3 27 27 C 1.50702 * 124.52227 * 359.95001 * 26 2 1 28 28 H 1.09001 * 109.46720 * 89.98132 * 1 2 3 29 29 H 1.08999 * 109.47231 * 209.97870 * 1 2 3 30 30 H 1.09002 * 109.47437 * 329.97976 * 1 2 3 31 31 H 1.07996 * 123.34657 * 359.97438 * 3 2 1 32 32 H 0.97006 * 119.99482 * 0.02562 * 7 5 4 33 33 H 1.09006 * 109.46971 * 299.99615 * 10 8 7 34 34 H 1.08990 * 109.47506 * 59.99735 * 10 8 7 35 35 H 1.09002 * 109.47542 * 180.02562 * 10 8 7 36 36 H 1.08997 * 109.46770 * 185.00153 * 11 8 7 37 37 H 1.08995 * 109.47019 * 65.00366 * 11 8 7 38 38 H 1.00904 * 110.99913 * 303.95145 * 12 11 8 39 39 H 1.09004 * 109.47040 * 299.99934 * 13 12 11 40 40 H 1.09000 * 109.47033 * 59.99886 * 13 12 11 41 41 H 0.96996 * 120.00269 * 359.97438 * 16 14 13 42 42 H 0.97002 * 120.00022 * 179.97438 * 20 19 17 43 43 H 1.08996 * 109.46875 * 89.99968 * 27 26 2 44 44 H 1.09001 * 109.46710 * 209.99791 * 27 26 2 45 45 H 1.08998 * 109.46871 * 329.99642 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2446 1.1601 0.0000 4 6 3.5937 0.9428 -0.0006 5 6 4.6231 1.9863 -0.0012 6 8 4.3001 3.1597 -0.0009 7 7 5.9273 1.6464 -0.0023 8 6 6.9561 2.6893 -0.0035 9 1 6.6124 3.5393 0.5861 10 6 7.2234 3.1403 -1.4408 11 6 8.2455 2.1344 0.6052 12 7 7.9626 1.5922 1.9408 13 6 9.1807 1.0498 2.5576 14 6 8.8521 0.5045 3.9235 15 8 7.7150 0.5616 4.3418 16 7 9.8218 -0.0466 4.6801 17 6 9.5227 -0.5432 5.9225 18 1 8.5102 -0.4924 6.2950 19 6 10.5222 -1.1118 6.7025 20 7 11.7541 -1.1741 6.2490 21 14 10.1150 -1.7878 8.3956 22 1 8.6677 -1.5984 8.6692 23 1 10.4417 -3.2356 8.4422 24 1 10.9116 -1.0673 9.4210 25 16 3.8969 -0.7892 -0.0087 26 6 2.2250 -1.1292 -0.0005 27 6 1.6355 -2.5161 0.0000 28 1 -0.3633 0.0003 -1.0277 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3634 0.8898 0.5141 31 1 1.8019 2.1452 -0.0004 32 1 6.1847 0.7111 -0.0030 33 1 7.5671 2.2903 -2.0303 34 1 6.3049 3.5355 -1.8745 35 1 7.9892 3.9160 -1.4418 36 1 8.9823 2.9335 0.6861 37 1 8.6371 1.3424 -0.0330 38 1 7.5385 2.2910 2.5324 39 1 9.5792 0.2503 1.9330 40 1 9.9237 1.8417 2.6520 41 1 10.7310 -0.0926 4.3454 42 1 12.4519 -1.5707 6.7937 43 1 1.4926 -2.8505 -1.0276 44 1 2.3129 -3.1986 0.5133 45 1 0.6747 -2.5024 0.5145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275013067.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:54 Heat of formation + Delta-G solvation = -53.729575 kcal Electronic energy + Delta-G solvation = -26228.744807 eV Core-core repulsion = 22372.258003 eV Total energy + Delta-G solvation = -3856.486804 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.91837 -38.59456 -38.23869 -36.59125 -34.29325 -33.65945 -32.56009 -31.25986 -30.97507 -29.76007 -27.60652 -26.24790 -25.03159 -23.85538 -23.15203 -21.38509 -20.59310 -19.27620 -18.79424 -18.07752 -17.89272 -16.77438 -16.14825 -15.90101 -15.27799 -15.20084 -14.67288 -14.58206 -14.54420 -14.24476 -13.96202 -13.91895 -13.51314 -13.39896 -13.22117 -13.13843 -12.72435 -12.59519 -12.52265 -12.07987 -12.02083 -11.89846 -11.84373 -11.75089 -11.54213 -11.48868 -11.06647 -11.00418 -10.91068 -10.34968 -10.23294 -10.04164 -9.52831 -9.13750 -8.72627 -8.50219 -8.48677 -8.11405 -7.96998 -6.42798 -3.83457 0.41196 1.35834 1.77611 2.21867 3.09109 3.15628 3.24207 3.26324 3.33771 3.89735 4.04691 4.27864 4.55371 4.69265 4.78570 4.91333 5.01853 5.06105 5.09979 5.15371 5.22382 5.22761 5.28187 5.37180 5.44058 5.44234 5.55565 5.56689 5.58881 5.72392 5.76284 5.78181 5.91495 5.94328 6.04390 6.16695 6.24356 6.29615 6.45240 7.13190 7.49374 7.54652 7.58495 8.05629 8.18329 8.60318 9.17262 9.53373 10.04852 10.75041 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010529 B = 0.002611 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.655705 B =10719.421672 C =12670.366930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.127 4.127 3 C -0.052 4.052 4 C -0.263 4.263 5 C 0.594 3.406 6 O -0.539 6.539 7 N -0.703 5.703 8 C 0.146 3.854 9 H 0.089 0.911 10 C -0.161 4.161 11 C 0.047 3.953 12 N -0.668 5.668 13 C 0.050 3.950 14 C 0.440 3.560 15 O -0.581 6.581 16 N -0.564 5.564 17 C -0.298 4.298 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.282 1.282 25 S 0.213 5.787 26 C -0.203 4.203 27 C -0.085 4.085 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.150 0.850 32 H 0.403 0.597 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.045 0.955 37 H 0.078 0.922 38 H 0.352 0.648 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.698 1.197 -18.383 22.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.140 4.140 3 C -0.085 4.085 4 C -0.384 4.384 5 C 0.381 3.619 6 O -0.419 6.419 7 N -0.353 5.353 8 C 0.041 3.959 9 H 0.107 0.893 10 C -0.220 4.220 11 C -0.083 4.083 12 N -0.300 5.300 13 C -0.082 4.082 14 C 0.226 3.774 15 O -0.465 6.465 16 N -0.201 5.201 17 C -0.427 4.427 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.208 1.208 25 S 0.482 5.518 26 C -0.323 4.323 27 C -0.144 4.144 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.168 0.832 32 H 0.238 0.762 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.096 0.904 38 H 0.171 0.829 39 H 0.104 0.896 40 H 0.062 0.938 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.354 0.474 -18.235 22.607 hybrid contribution -0.089 0.795 0.977 1.263 sum -13.444 1.269 -17.258 21.913 Atomic orbital electron populations 1.20501 0.89596 1.02827 1.02143 1.18638 0.97765 0.91248 1.06303 1.20564 0.90997 0.99721 0.97231 1.24510 0.97971 0.97180 1.18708 1.16892 0.81770 0.87260 0.76008 1.90801 1.81816 1.18245 1.51015 1.45687 1.04717 1.10459 1.74474 1.20985 0.87174 0.91036 0.96693 0.89296 1.22146 1.02394 1.01571 0.95913 1.22324 0.95211 0.98856 0.91908 1.60074 1.26295 1.40658 1.03022 1.21684 0.91329 0.99434 0.95777 1.19803 0.86278 0.84648 0.86709 1.90539 1.20850 1.61491 1.73613 1.41869 1.09953 1.52438 1.15856 1.19750 0.96861 1.34544 0.91581 0.87891 1.25261 0.94807 0.97728 1.00195 1.69621 1.00736 1.45504 1.38511 0.85807 0.78838 0.78328 0.81425 1.19200 1.20739 1.20768 1.83137 1.02877 0.98072 1.67689 1.24053 0.98732 1.00322 1.09178 1.20401 1.01222 0.89898 1.02846 0.91344 0.91443 0.91420 0.83201 0.76214 0.92254 0.91801 0.91424 0.93657 0.90396 0.82896 0.89571 0.93796 0.77486 0.91937 0.90541 0.90990 0.90234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.69 9.84 36.00 0.35 -0.34 16 2 C -0.13 -1.32 5.78 -106.45 -0.62 -1.94 16 3 C -0.05 -0.63 9.80 -40.43 -0.40 -1.03 16 4 C -0.26 -3.47 6.45 -36.79 -0.24 -3.71 16 5 C 0.59 8.72 7.75 -12.90 -0.10 8.62 16 6 O -0.54 -9.36 16.50 5.18 0.09 -9.28 16 7 N -0.70 -8.95 4.80 -55.14 -0.26 -9.21 16 8 C 0.15 1.69 2.81 -67.93 -0.19 1.50 16 9 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 10 C -0.16 -1.53 9.48 37.15 0.35 -1.18 16 11 C 0.05 0.54 5.24 -3.82 -0.02 0.52 16 12 N -0.67 -10.36 5.85 -115.05 -0.67 -11.03 16 13 C 0.05 0.85 6.17 -4.97 -0.03 0.82 16 14 C 0.44 10.28 7.82 -10.99 -0.09 10.19 16 15 O -0.58 -15.76 15.78 5.55 0.09 -15.67 16 16 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16 17 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 18 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.47 13.05 55.50 0.72 -23.75 16 21 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 S 0.21 2.35 22.10 -107.50 -2.38 -0.03 16 26 C -0.20 -2.06 6.28 -35.86 -0.23 -2.28 16 27 C -0.09 -0.62 9.98 36.01 0.36 -0.26 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.43 6.54 -51.93 -0.34 0.10 16 30 H 0.07 0.48 8.13 -51.93 -0.42 0.06 16 31 H 0.15 1.75 8.06 -52.49 -0.42 1.32 16 32 H 0.40 4.82 7.72 -40.82 -0.31 4.51 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.35 5.98 8.43 -39.29 -0.33 5.65 16 39 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 42 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.49 6.57 -51.93 -0.34 0.15 16 LS Contribution 394.62 15.07 5.95 5.95 Total: -1.00 -33.41 394.62 -9.25 -42.66 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -6.63 Total: 15.62 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -1.08 Total: 2.97 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.27 Total: -58.25 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: 0.17 Total: -24.95 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -2.38 Total: -0.03 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.41 -9.25 -42.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275013067.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.069 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds