Wall clock time and date at job start Tue Mar 31 2020 22:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37479 * 122.45020 * 2 1 4 4 C 1.36643 * 113.29695 * 180.02562 * 3 2 1 5 5 C 1.46586 * 125.45696 * 179.97438 * 4 3 2 6 6 O 1.21706 * 119.99958 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00168 * 180.02562 * 5 4 3 8 8 C 1.46495 * 120.00080 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.46996 * 35.00503 * 8 7 5 10 10 C 1.52994 * 109.47359 * 275.00294 * 8 7 5 11 11 C 1.53006 * 109.46914 * 154.99872 * 8 7 5 12 12 N 1.46898 * 109.47138 * 305.00206 * 11 8 7 13 13 C 1.46906 * 110.99888 * 180.02562 * 12 11 8 14 14 C 1.50699 * 109.47140 * 179.97438 * 13 12 11 15 15 O 1.21289 * 119.99678 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99614 * 180.02562 * 14 13 12 17 17 C 1.37097 * 119.99518 * 180.02562 * 16 14 13 18 18 H 1.08003 * 120.00058 * 359.97438 * 17 16 14 19 19 C 1.38949 * 120.00085 * 179.97438 * 17 16 14 20 20 N 1.31416 * 119.99807 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00409 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47138 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47229 * 119.99992 * 21 19 17 24 24 H 1.48497 * 109.47429 * 239.99972 * 21 19 17 25 25 S 1.75834 * 109.08483 * 0.26395 * 4 3 2 26 26 C 1.33815 * 122.45075 * 180.02562 * 2 1 3 27 27 C 1.50702 * 124.52227 * 359.95001 * 26 2 1 28 28 H 1.09001 * 109.46720 * 89.98132 * 1 2 3 29 29 H 1.08999 * 109.47231 * 209.97870 * 1 2 3 30 30 H 1.09002 * 109.47437 * 329.97976 * 1 2 3 31 31 H 1.07996 * 123.34657 * 359.97438 * 3 2 1 32 32 H 0.97006 * 119.99482 * 0.02562 * 7 5 4 33 33 H 1.09006 * 109.46971 * 299.99615 * 10 8 7 34 34 H 1.08990 * 109.47506 * 59.99735 * 10 8 7 35 35 H 1.09002 * 109.47542 * 180.02562 * 10 8 7 36 36 H 1.08997 * 109.46770 * 185.00153 * 11 8 7 37 37 H 1.08995 * 109.47019 * 65.00366 * 11 8 7 38 38 H 1.00904 * 110.99913 * 303.95145 * 12 11 8 39 39 H 1.09004 * 109.47040 * 299.99934 * 13 12 11 40 40 H 1.09000 * 109.47033 * 59.99886 * 13 12 11 41 41 H 0.96996 * 120.00269 * 359.97438 * 16 14 13 42 42 H 0.97002 * 120.00022 * 179.97438 * 20 19 17 43 43 H 1.08996 * 109.46875 * 89.99968 * 27 26 2 44 44 H 1.09001 * 109.46710 * 209.99791 * 27 26 2 45 45 H 1.08998 * 109.46871 * 329.99642 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2446 1.1601 0.0000 4 6 3.5937 0.9428 -0.0006 5 6 4.6231 1.9863 -0.0012 6 8 4.3001 3.1597 -0.0009 7 7 5.9273 1.6464 -0.0023 8 6 6.9561 2.6893 -0.0035 9 1 6.6124 3.5393 0.5861 10 6 7.2234 3.1403 -1.4408 11 6 8.2455 2.1344 0.6052 12 7 7.9626 1.5922 1.9408 13 6 9.1807 1.0498 2.5576 14 6 8.8521 0.5045 3.9235 15 8 7.7150 0.5616 4.3418 16 7 9.8218 -0.0466 4.6801 17 6 9.5227 -0.5432 5.9225 18 1 8.5102 -0.4924 6.2950 19 6 10.5222 -1.1118 6.7025 20 7 11.7541 -1.1741 6.2490 21 14 10.1150 -1.7878 8.3956 22 1 8.6677 -1.5984 8.6692 23 1 10.4417 -3.2356 8.4422 24 1 10.9116 -1.0673 9.4210 25 16 3.8969 -0.7892 -0.0087 26 6 2.2250 -1.1292 -0.0005 27 6 1.6355 -2.5161 0.0000 28 1 -0.3633 0.0003 -1.0277 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3634 0.8898 0.5141 31 1 1.8019 2.1452 -0.0004 32 1 6.1847 0.7111 -0.0030 33 1 7.5671 2.2903 -2.0303 34 1 6.3049 3.5355 -1.8745 35 1 7.9892 3.9160 -1.4418 36 1 8.9823 2.9335 0.6861 37 1 8.6371 1.3424 -0.0330 38 1 7.5385 2.2910 2.5324 39 1 9.5792 0.2503 1.9330 40 1 9.9237 1.8417 2.6520 41 1 10.7310 -0.0926 4.3454 42 1 12.4519 -1.5707 6.7937 43 1 1.4926 -2.8505 -1.0276 44 1 2.3129 -3.1986 0.5133 45 1 0.6747 -2.5024 0.5145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275013067.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:53 Heat of formation + Delta-G solvation = -78.121246 kcal Electronic energy + Delta-G solvation = -26229.802509 eV Core-core repulsion = 22372.258003 eV Total energy + Delta-G solvation = -3857.544506 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.98362 -40.13867 -39.36132 -37.76461 -36.03753 -35.15490 -33.43340 -33.24117 -31.95425 -30.42646 -28.97181 -27.06973 -26.66199 -24.88913 -24.35310 -22.31215 -21.63534 -21.04831 -19.92436 -19.66619 -19.01142 -18.03855 -17.42567 -17.05110 -16.66982 -16.38099 -16.27103 -15.94117 -15.63256 -15.39700 -15.09870 -15.05612 -14.81865 -14.60313 -14.13316 -14.06053 -13.69530 -13.57624 -13.45774 -13.33536 -13.08674 -13.01812 -12.82650 -12.81328 -12.75949 -12.61057 -12.49564 -12.40628 -12.12476 -11.90295 -11.77666 -11.51510 -11.18328 -10.36585 -10.17578 -10.01115 -9.60364 -9.36317 -9.33053 -8.47110 -5.95392 -0.50553 0.47937 0.91237 1.33191 1.35973 1.41445 1.55378 2.06007 2.08168 2.20420 2.28850 2.88887 3.20488 3.50691 3.73375 3.82239 3.89252 4.14068 4.18108 4.25739 4.31579 4.36670 4.51961 4.57606 4.58496 4.63317 4.65372 4.69026 4.73244 4.76270 4.85546 4.90612 5.02823 5.07098 5.09907 5.25406 5.40872 5.41041 5.46225 5.53852 5.86357 6.08643 6.29293 6.45058 6.60551 7.11166 7.13210 7.56965 8.12828 8.70484 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010529 B = 0.002611 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.655705 B =10719.421672 C =12670.366930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.139 4.139 3 C -0.056 4.056 4 C -0.298 4.298 5 C 0.589 3.411 6 O -0.578 6.578 7 N -0.697 5.697 8 C 0.144 3.856 9 H 0.067 0.933 10 C -0.152 4.152 11 C 0.054 3.946 12 N -0.682 5.682 13 C 0.066 3.934 14 C 0.437 3.563 15 O -0.624 6.624 16 N -0.573 5.573 17 C -0.332 4.332 18 H 0.076 0.924 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.991 3.009 22 H -0.275 1.275 23 H -0.270 1.270 24 H -0.271 1.271 25 S 0.218 5.782 26 C -0.198 4.198 27 C -0.087 4.087 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.146 0.854 32 H 0.407 0.593 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.340 0.660 39 H 0.111 0.889 40 H 0.069 0.931 41 H 0.397 0.603 42 H 0.277 0.723 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.362 -0.051 -19.272 23.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.151 4.151 3 C -0.090 4.090 4 C -0.418 4.418 5 C 0.376 3.624 6 O -0.461 6.461 7 N -0.347 5.347 8 C 0.039 3.961 9 H 0.085 0.915 10 C -0.211 4.211 11 C -0.075 4.075 12 N -0.314 5.314 13 C -0.066 4.066 14 C 0.224 3.776 15 O -0.511 6.511 16 N -0.211 5.211 17 C -0.461 4.461 18 H 0.094 0.906 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.814 3.186 22 H -0.200 1.200 23 H -0.195 1.195 24 H -0.196 1.196 25 S 0.488 5.512 26 C -0.318 4.318 27 C -0.145 4.145 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.164 0.836 32 H 0.243 0.757 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.117 0.883 38 H 0.158 0.842 39 H 0.129 0.871 40 H 0.086 0.914 41 H 0.231 0.769 42 H 0.087 0.913 43 H 0.113 0.887 44 H 0.093 0.907 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.967 -0.789 -19.158 23.148 hybrid contribution -0.237 1.170 1.214 1.702 sum -13.204 0.381 -17.944 22.282 Atomic orbital electron populations 1.20572 0.87420 1.03644 1.03247 1.18908 0.99339 0.90553 1.06272 1.20779 0.91068 1.00447 0.96739 1.24520 0.98090 0.98167 1.20990 1.17180 0.82578 0.87136 0.75487 1.90761 1.82455 1.19752 1.53123 1.45721 1.04462 1.10943 1.73539 1.21080 0.86931 0.90128 0.97913 0.91482 1.22065 1.02184 1.02662 0.94163 1.22397 0.95338 1.00109 0.89690 1.60074 1.25899 1.41088 1.04321 1.21551 0.92351 1.00688 0.92013 1.20949 0.85187 0.82940 0.88504 1.90510 1.22672 1.62724 1.75150 1.41929 1.10573 1.53045 1.15541 1.19663 0.96192 1.36807 0.93471 0.90580 1.26004 0.94539 0.97343 1.03332 1.69672 1.01219 1.45466 1.39725 0.84905 0.78182 0.78206 0.77260 1.19956 1.19484 1.19630 1.83008 1.04115 0.96400 1.67680 1.24507 0.98034 1.01749 1.07473 1.20561 1.01752 0.87951 1.04281 0.90023 0.89970 0.91292 0.83603 0.75742 0.90669 0.93552 0.89450 0.91492 0.88322 0.84241 0.87104 0.91353 0.76901 0.91305 0.88708 0.90675 0.88713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.21 9.84 71.23 0.70 -0.51 16 2 C -0.14 -2.80 5.78 -21.05 -0.12 -2.92 16 3 C -0.06 -1.40 9.80 21.72 0.21 -1.19 16 4 C -0.30 -8.12 6.45 24.08 0.16 -7.97 16 5 C 0.59 18.07 7.75 86.42 0.67 18.74 16 6 O -0.58 -21.27 16.50 -4.37 -0.07 -21.34 16 7 N -0.70 -17.92 4.80 -446.59 -2.14 -20.06 16 8 C 0.14 3.26 2.81 44.99 0.13 3.39 16 9 H 0.07 1.83 7.58 -2.39 -0.02 1.81 16 10 C -0.15 -2.68 9.48 71.98 0.68 -1.99 16 11 C 0.05 1.10 5.24 86.31 0.45 1.55 16 12 N -0.68 -20.44 5.85 -517.92 -3.03 -23.48 16 13 C 0.07 2.13 6.17 85.56 0.53 2.66 16 14 C 0.44 20.47 7.82 87.66 0.69 21.16 16 15 O -0.62 -34.73 15.78 -3.06 -0.05 -34.78 16 16 N -0.57 -29.09 5.29 -306.99 -1.62 -30.72 16 17 C -0.33 -18.83 9.68 84.04 0.81 -18.02 16 18 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 19 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 20 N -0.92 -49.27 13.05 21.66 0.28 -48.98 16 21 Si 0.99 42.95 29.55 68.60 2.03 44.98 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 25 S 0.22 4.77 22.10 -56.49 -1.25 3.52 16 26 C -0.20 -3.76 6.28 24.68 0.15 -3.61 16 27 C -0.09 -1.06 9.98 71.24 0.71 -0.35 16 28 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.08 0.86 6.54 -2.39 -0.02 0.84 16 30 H 0.07 0.91 8.13 -2.39 -0.02 0.89 16 31 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 32 H 0.41 9.65 7.72 -92.70 -0.72 8.94 16 33 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.34 11.61 8.43 -89.69 -0.76 10.85 16 39 H 0.11 3.07 8.14 -2.38 -0.02 3.05 16 40 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 42 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 43 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.09 0.89 6.57 -2.39 -0.02 0.88 16 Total: -1.00 -74.44 394.62 -0.78 -75.22 By element: Atomic # 1 Polarization: 46.06 SS G_CDS: -1.16 Total: 44.90 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 6.24 Total: 10.74 kcal Atomic # 7 Polarization: -116.73 SS G_CDS: -6.51 Total: -123.24 kcal Atomic # 8 Polarization: -56.00 SS G_CDS: -0.12 Total: -56.12 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: 4.77 SS G_CDS: -1.25 Total: 3.52 kcal Total: -74.44 -0.78 -75.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275013067.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.905 kcal (2) G-P(sol) polarization free energy of solvation -74.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds