Wall clock time and date at job start Tue Mar 31 2020 22:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30177 * 126.80170 * 2 1 4 4 O 1.20918 * 111.60013 * 180.02562 * 3 2 1 5 5 C 1.34040 * 111.57185 * 359.76973 * 4 3 2 6 6 C 1.50693 * 126.78125 * 180.28426 * 5 4 3 7 7 C 1.35448 * 106.44393 * 0.37275 * 5 4 3 8 8 C 1.50706 * 128.00868 * 179.91485 * 7 5 4 9 9 N 1.46896 * 109.46904 * 269.67850 * 8 7 5 10 10 C 1.46904 * 110.99836 * 181.68048 * 9 8 7 11 11 C 1.52995 * 115.54892 * 294.70479 * 10 9 8 12 12 N 1.46499 * 109.47325 * 275.81740 * 11 10 9 13 13 C 1.34779 * 120.00124 * 174.67845 * 12 11 10 14 14 O 1.21286 * 119.99669 * 0.27723 * 13 12 11 15 15 C 1.50699 * 120.00126 * 180.28178 * 13 12 11 16 16 S 1.81001 * 109.47012 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99954 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00093 * 359.97438 * 17 16 15 19 19 C 1.38800 * 120.00201 * 179.97438 * 17 16 15 20 20 N 1.31634 * 119.99892 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99993 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47228 * 90.00104 * 21 19 17 23 23 H 1.48502 * 109.47050 * 209.99718 * 21 19 17 24 24 H 1.48499 * 109.47128 * 329.99598 * 21 19 17 25 25 C 1.53000 * 117.51788 * 80.41109 * 10 9 8 26 26 C 1.52997 * 60.00130 * 107.47665 * 25 10 9 27 27 H 1.08997 * 109.47016 * 269.97673 * 1 2 3 28 28 H 1.09007 * 109.46979 * 29.97139 * 1 2 3 29 29 H 1.09000 * 109.47445 * 149.96956 * 1 2 3 30 30 H 1.08999 * 109.47719 * 270.10881 * 6 5 4 31 31 H 1.09006 * 109.47176 * 30.10597 * 6 5 4 32 32 H 1.09000 * 109.47660 * 150.10747 * 6 5 4 33 33 H 1.08999 * 109.47056 * 149.68274 * 8 7 5 34 34 H 1.08993 * 109.46885 * 29.67923 * 8 7 5 35 35 H 1.00901 * 111.00645 * 305.63583 * 9 8 7 36 36 H 1.09003 * 109.47215 * 155.82468 * 11 10 9 37 37 H 1.08995 * 109.47404 * 35.82430 * 11 10 9 38 38 H 0.96999 * 120.00200 * 354.95616 * 12 11 10 39 39 H 1.08998 * 109.46531 * 299.99771 * 15 13 12 40 40 H 1.08998 * 109.47567 * 59.99785 * 15 13 12 41 41 H 0.96993 * 120.00250 * 179.97438 * 20 19 17 42 42 H 1.08997 * 117.49600 * 214.97250 * 25 10 9 43 43 H 1.09003 * 117.49793 * 359.97438 * 25 10 9 44 44 H 1.08995 * 117.49917 * 252.50562 * 26 25 10 45 45 H 1.09005 * 117.51180 * 107.47956 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6025 -0.6068 0.0041 6 6 4.9021 -1.3696 0.0110 7 6 2.3540 -1.1321 -0.0007 8 6 1.9590 -2.5864 -0.0003 9 7 1.8294 -3.0590 -1.3851 10 6 1.4058 -4.4651 -1.4240 11 6 2.4068 -5.4718 -0.8537 12 7 3.3848 -5.8260 -1.8853 13 6 4.4305 -6.6192 -1.5787 14 8 4.5589 -7.0438 -0.4499 15 6 5.4400 -6.9783 -2.6383 16 16 6.7125 -8.0476 -1.9216 17 6 7.7288 -8.3052 -3.3377 18 1 7.4676 -7.8475 -4.2803 19 6 8.8653 -9.0963 -3.2417 20 7 9.1840 -9.6537 -2.0926 21 14 9.9431 -9.3687 -4.7428 22 1 10.9856 -8.3127 -4.8020 23 1 10.5928 -10.7009 -4.6505 24 1 9.1080 -9.3092 -5.9692 25 6 -0.0826 -4.7607 -1.2287 26 6 0.5524 -4.9131 -2.6123 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8903 -0.5134 29 1 -0.3634 -0.8897 -0.5143 30 1 5.2201 -1.5551 -1.0149 31 1 5.6637 -0.7852 0.5274 32 1 4.7627 -2.3204 0.5256 33 1 1.0053 -2.7038 0.5144 34 1 2.7231 -3.1702 0.5129 35 1 1.1941 -2.4754 -1.9085 36 1 1.8771 -6.3686 -0.5322 37 1 2.9219 -5.0289 -0.0013 38 1 3.2821 -5.4863 -2.7880 39 1 4.9408 -7.5037 -3.4524 40 1 5.9029 -6.0692 -3.0223 41 1 9.9780 -10.2068 -2.0256 42 1 -0.3487 -5.6723 -0.6938 43 1 -0.7478 -3.9117 -1.0708 44 1 0.3049 -4.1645 -3.3649 45 1 0.7044 -5.9251 -2.9879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277007360.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:59 Heat of formation + Delta-G solvation = 43.478446 kcal Electronic energy + Delta-G solvation = -26466.976689 eV Core-core repulsion = 22614.705141 eV Total energy + Delta-G solvation = -3852.271548 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.17370 -39.76704 -38.47238 -36.00454 -34.09271 -33.83291 -32.52429 -32.41872 -29.74152 -29.07528 -28.20781 -26.46361 -25.96260 -25.40451 -22.93091 -21.75917 -20.45722 -20.22319 -20.06457 -17.95498 -17.79105 -17.22538 -16.63422 -16.36972 -16.13074 -15.28012 -14.98621 -14.82494 -14.79417 -14.27650 -14.02983 -13.90923 -13.82850 -13.55812 -13.32782 -13.19438 -13.08648 -13.00288 -12.76964 -12.60692 -12.51457 -12.05198 -11.93484 -11.73953 -11.35160 -11.12306 -11.05645 -11.01507 -10.75196 -10.63891 -10.18295 -9.80626 -9.46143 -9.39609 -9.06118 -8.83846 -8.72014 -8.22260 -6.48732 -6.20933 -3.91126 1.20155 1.84513 2.84229 2.93990 3.12948 3.22916 3.23549 3.30034 3.40906 3.66433 3.84929 3.89710 4.13930 4.21429 4.25765 4.34458 4.46845 4.59635 4.67318 4.93256 5.03828 5.10547 5.13694 5.14297 5.18035 5.23308 5.26236 5.30902 5.32821 5.39970 5.49309 5.49761 5.56274 5.61172 5.70076 5.70543 5.80594 5.88140 5.92124 6.17053 6.51812 6.65125 6.87702 7.60614 7.77143 8.01401 8.36206 8.64631 9.24569 10.86478 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014402 B = 0.002311 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.667633 B =12113.055590 C =13320.584552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.023 3.977 3 N -0.369 5.369 4 O 0.093 5.907 5 C 0.001 3.999 6 C -0.076 4.076 7 C -0.210 4.210 8 C 0.139 3.861 9 N -0.641 5.641 10 C 0.038 3.962 11 C 0.169 3.831 12 N -0.729 5.729 13 C 0.532 3.468 14 O -0.522 6.522 15 C -0.152 4.152 16 S -0.061 6.061 17 C -0.534 4.534 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.204 4.204 26 C -0.163 4.163 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.048 0.952 34 H 0.091 0.909 35 H 0.344 0.656 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.401 0.599 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.063 17.257 1.965 26.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.137 4.137 3 N -0.076 5.076 4 O 0.030 5.970 5 C -0.063 4.063 6 C -0.133 4.133 7 C -0.214 4.214 8 C 0.011 3.989 9 N -0.271 5.271 10 C -0.055 4.055 11 C 0.045 3.955 12 N -0.383 5.383 13 C 0.318 3.682 14 O -0.396 6.396 15 C -0.303 4.303 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.744 3.256 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.245 4.245 26 C -0.201 4.201 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.066 0.934 34 H 0.109 0.891 35 H 0.163 0.837 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.235 0.765 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.119 0.881 43 H 0.112 0.888 44 H 0.117 0.883 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -19.236 17.622 3.906 26.378 hybrid contribution -0.608 -0.097 -2.513 2.588 sum -19.844 17.525 1.393 26.511 Atomic orbital electron populations 1.20137 0.86208 1.03490 1.03341 1.23435 0.98730 0.88697 1.02800 1.73849 0.89332 1.23928 1.20498 1.84815 1.21553 1.22768 1.67843 1.24409 0.98524 0.83383 0.99972 1.20416 0.89564 0.98534 1.04835 1.20740 0.91774 0.96774 1.12104 1.20072 1.00896 0.88035 0.89926 1.60243 1.53941 1.00319 1.12572 1.21863 0.90204 0.89654 1.03734 1.20596 0.88779 0.95126 0.91037 1.45895 1.26374 1.52442 1.13601 1.20295 0.81009 0.77405 0.89486 1.90701 1.74625 1.52307 1.21988 1.23515 1.00729 1.05289 1.00742 1.85376 1.22297 1.59532 1.16210 1.22867 1.12066 1.36375 0.96964 0.90950 1.24989 0.96849 0.94840 0.96923 1.70016 1.25576 1.30652 1.24080 0.86177 0.79976 0.77754 0.81651 1.20269 1.20784 1.19709 1.23629 0.96185 1.04111 1.00545 1.23174 1.02056 1.03492 0.91393 0.90160 0.90458 0.90537 0.88683 0.89860 0.88715 0.93420 0.89111 0.83679 0.91242 0.90849 0.76511 0.89348 0.89220 0.92210 0.88055 0.88755 0.88302 0.87560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.39 36.01 0.37 -0.08 16 2 C 0.02 0.22 7.33 -82.10 -0.60 -0.38 16 3 N -0.37 -4.33 12.07 33.42 0.40 -3.93 16 4 O 0.09 1.06 11.20 17.18 0.19 1.25 16 5 C 0.00 0.01 7.49 -35.31 -0.26 -0.25 16 6 C -0.08 -0.59 10.30 36.00 0.37 -0.22 16 7 C -0.21 -1.90 5.82 -104.42 -0.61 -2.51 16 8 C 0.14 1.08 5.82 -4.98 -0.03 1.05 16 9 N -0.64 -4.86 6.67 -101.22 -0.68 -5.54 16 10 C 0.04 0.29 1.86 -131.60 -0.25 0.04 16 11 C 0.17 1.82 5.72 -4.04 -0.02 1.80 16 12 N -0.73 -9.21 5.49 -60.30 -0.33 -9.54 16 13 C 0.53 9.53 7.85 -10.98 -0.09 9.44 16 14 O -0.52 -11.42 15.86 5.55 0.09 -11.33 16 15 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 16 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 17 C -0.53 -15.08 9.50 30.94 0.29 -14.78 16 18 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 19 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 20 N -0.87 -25.99 13.22 55.49 0.73 -25.25 16 21 Si 0.92 21.27 29.55 -169.99 -5.02 16.24 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 C -0.20 -1.27 10.07 -26.73 -0.27 -1.54 16 26 C -0.16 -1.07 9.71 -26.73 -0.26 -1.33 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.46 8.14 -51.92 -0.42 0.03 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.73 7.43 -51.93 -0.39 0.35 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 0.78 5.97 -51.93 -0.31 0.47 16 35 H 0.34 2.34 8.58 -39.29 -0.34 2.00 16 36 H 0.07 0.78 7.91 -51.93 -0.41 0.37 16 37 H 0.07 0.87 6.51 -51.93 -0.34 0.53 16 38 H 0.40 4.23 8.28 -40.82 -0.34 3.90 16 39 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 40 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 41 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.10 0.64 8.06 -51.93 -0.42 0.22 16 43 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 397.85 15.07 6.00 6.00 Total: -1.00 -34.65 397.85 -8.78 -43.43 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.73 Total: 2.06 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -1.22 Total: -9.56 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.13 Total: -44.26 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.28 Total: -10.08 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.65 -8.78 -43.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277007360.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.909 kcal (2) G-P(sol) polarization free energy of solvation -34.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds