Wall clock time and date at job start Tue Mar 31 2020 22:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30177 * 126.80170 * 2 1 4 4 O 1.20918 * 111.60013 * 180.02562 * 3 2 1 5 5 C 1.34040 * 111.57185 * 359.76973 * 4 3 2 6 6 C 1.50693 * 126.78125 * 180.28426 * 5 4 3 7 7 C 1.35448 * 106.44393 * 0.37275 * 5 4 3 8 8 C 1.50706 * 128.00868 * 179.91485 * 7 5 4 9 9 N 1.46896 * 109.46904 * 269.67850 * 8 7 5 10 10 C 1.46904 * 110.99836 * 181.68048 * 9 8 7 11 11 C 1.52995 * 115.54892 * 294.70479 * 10 9 8 12 12 N 1.46499 * 109.47325 * 275.81740 * 11 10 9 13 13 C 1.34779 * 120.00124 * 174.67845 * 12 11 10 14 14 O 1.21286 * 119.99669 * 0.27723 * 13 12 11 15 15 C 1.50699 * 120.00126 * 180.28178 * 13 12 11 16 16 S 1.81001 * 109.47012 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99954 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00093 * 359.97438 * 17 16 15 19 19 C 1.38800 * 120.00201 * 179.97438 * 17 16 15 20 20 N 1.31634 * 119.99892 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99993 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47228 * 90.00104 * 21 19 17 23 23 H 1.48502 * 109.47050 * 209.99718 * 21 19 17 24 24 H 1.48499 * 109.47128 * 329.99598 * 21 19 17 25 25 C 1.53000 * 117.51788 * 80.41109 * 10 9 8 26 26 C 1.52997 * 60.00130 * 107.47665 * 25 10 9 27 27 H 1.08997 * 109.47016 * 269.97673 * 1 2 3 28 28 H 1.09007 * 109.46979 * 29.97139 * 1 2 3 29 29 H 1.09000 * 109.47445 * 149.96956 * 1 2 3 30 30 H 1.08999 * 109.47719 * 270.10881 * 6 5 4 31 31 H 1.09006 * 109.47176 * 30.10597 * 6 5 4 32 32 H 1.09000 * 109.47660 * 150.10747 * 6 5 4 33 33 H 1.08999 * 109.47056 * 149.68274 * 8 7 5 34 34 H 1.08993 * 109.46885 * 29.67923 * 8 7 5 35 35 H 1.00901 * 111.00645 * 305.63583 * 9 8 7 36 36 H 1.09003 * 109.47215 * 155.82468 * 11 10 9 37 37 H 1.08995 * 109.47404 * 35.82430 * 11 10 9 38 38 H 0.96999 * 120.00200 * 354.95616 * 12 11 10 39 39 H 1.08998 * 109.46531 * 299.99771 * 15 13 12 40 40 H 1.08998 * 109.47567 * 59.99785 * 15 13 12 41 41 H 0.96993 * 120.00250 * 179.97438 * 20 19 17 42 42 H 1.08997 * 117.49600 * 214.97250 * 25 10 9 43 43 H 1.09003 * 117.49793 * 359.97438 * 25 10 9 44 44 H 1.08995 * 117.49917 * 252.50562 * 26 25 10 45 45 H 1.09005 * 117.51180 * 107.47956 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6025 -0.6068 0.0041 6 6 4.9021 -1.3696 0.0110 7 6 2.3540 -1.1321 -0.0007 8 6 1.9590 -2.5864 -0.0003 9 7 1.8294 -3.0590 -1.3851 10 6 1.4058 -4.4651 -1.4240 11 6 2.4068 -5.4718 -0.8537 12 7 3.3848 -5.8260 -1.8853 13 6 4.4305 -6.6192 -1.5787 14 8 4.5589 -7.0438 -0.4499 15 6 5.4400 -6.9783 -2.6383 16 16 6.7125 -8.0476 -1.9216 17 6 7.7288 -8.3052 -3.3377 18 1 7.4676 -7.8475 -4.2803 19 6 8.8653 -9.0963 -3.2417 20 7 9.1840 -9.6537 -2.0926 21 14 9.9431 -9.3687 -4.7428 22 1 10.9856 -8.3127 -4.8020 23 1 10.5928 -10.7009 -4.6505 24 1 9.1080 -9.3092 -5.9692 25 6 -0.0826 -4.7607 -1.2287 26 6 0.5524 -4.9131 -2.6123 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8903 -0.5134 29 1 -0.3634 -0.8897 -0.5143 30 1 5.2201 -1.5551 -1.0149 31 1 5.6637 -0.7852 0.5274 32 1 4.7627 -2.3204 0.5256 33 1 1.0053 -2.7038 0.5144 34 1 2.7231 -3.1702 0.5129 35 1 1.1941 -2.4754 -1.9085 36 1 1.8771 -6.3686 -0.5322 37 1 2.9219 -5.0289 -0.0013 38 1 3.2821 -5.4863 -2.7880 39 1 4.9408 -7.5037 -3.4524 40 1 5.9029 -6.0692 -3.0223 41 1 9.9780 -10.2068 -2.0256 42 1 -0.3487 -5.6723 -0.6938 43 1 -0.7478 -3.9117 -1.0708 44 1 0.3049 -4.1645 -3.3649 45 1 0.7044 -5.9251 -2.9879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277007360.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:58 Heat of formation + Delta-G solvation = 18.892018 kcal Electronic energy + Delta-G solvation = -26468.042836 eV Core-core repulsion = 22614.705141 eV Total energy + Delta-G solvation = -3853.337695 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.91859 -40.79619 -39.50272 -36.69657 -35.10017 -34.70998 -34.55333 -33.14577 -31.20313 -29.64911 -28.87899 -27.83500 -27.25133 -26.61246 -23.47636 -22.44251 -21.58870 -21.12627 -20.82570 -19.73354 -18.68527 -17.96068 -17.77691 -17.35495 -17.10452 -16.85414 -16.34840 -16.22199 -15.67808 -15.49319 -14.93749 -14.65391 -14.55702 -14.39424 -14.34137 -14.28828 -14.06085 -13.92499 -13.60182 -13.44567 -13.22711 -13.19492 -13.13361 -12.86856 -12.73500 -12.58231 -12.39166 -12.00483 -11.78073 -11.67168 -11.27291 -11.11870 -10.89074 -10.84017 -10.23616 -10.19929 -10.01698 -9.30035 -8.62599 -8.32177 -6.09265 0.45836 1.15529 1.29923 1.43942 1.49393 1.59706 1.68782 2.14040 2.24177 2.30925 2.82834 3.01931 3.13325 3.24254 3.36918 3.49665 3.61727 3.71562 3.84128 3.98618 4.05292 4.12609 4.34711 4.36736 4.45861 4.56654 4.58463 4.61253 4.62359 4.68026 4.71742 4.73549 4.79024 4.79736 4.86895 4.94684 5.03086 5.12804 5.23466 5.26560 5.44697 5.49325 5.92196 6.22557 6.34876 6.59076 7.09438 7.27152 7.31458 8.76895 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014402 B = 0.002311 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.667633 B =12113.055590 C =13320.584552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.025 3.975 3 N -0.401 5.401 4 O 0.073 5.927 5 C -0.008 4.008 6 C -0.074 4.074 7 C -0.211 4.211 8 C 0.145 3.855 9 N -0.644 5.644 10 C 0.032 3.968 11 C 0.168 3.832 12 N -0.702 5.702 13 C 0.535 3.465 14 O -0.568 6.568 15 C -0.129 4.129 16 S -0.149 6.149 17 C -0.545 4.545 18 H 0.082 0.918 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.997 3.003 22 H -0.268 1.268 23 H -0.279 1.279 24 H -0.258 1.258 25 C -0.190 4.190 26 C -0.157 4.157 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.353 0.647 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.415 0.585 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.271 0.729 42 H 0.100 0.900 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.862 17.963 -0.011 28.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.135 4.135 3 N -0.112 5.112 4 O 0.014 5.986 5 C -0.072 4.072 6 C -0.131 4.131 7 C -0.215 4.215 8 C 0.017 3.983 9 N -0.275 5.275 10 C -0.060 4.060 11 C 0.044 3.956 12 N -0.355 5.355 13 C 0.320 3.680 14 O -0.446 6.446 15 C -0.280 4.280 16 S 0.078 5.922 17 C -0.693 4.693 18 H 0.100 0.900 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.818 3.182 22 H -0.193 1.193 23 H -0.204 1.204 24 H -0.182 1.182 25 C -0.230 4.230 26 C -0.194 4.194 27 H 0.109 0.891 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.173 0.827 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.251 0.749 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.080 0.920 42 H 0.118 0.882 43 H 0.130 0.870 44 H 0.131 0.869 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -21.063 18.363 1.897 28.008 hybrid contribution -0.183 -0.261 -1.870 1.897 sum -21.247 18.102 0.027 27.913 Atomic orbital electron populations 1.20304 0.83869 1.04655 1.04381 1.24010 1.00213 0.88196 1.01066 1.73842 0.89724 1.25207 1.22399 1.84775 1.21708 1.23533 1.68621 1.24782 0.99519 0.83097 0.99806 1.20447 0.89267 0.98416 1.04967 1.20939 0.91483 0.97361 1.11765 1.20014 1.01198 0.86876 0.90243 1.60158 1.54551 1.00325 1.12460 1.21559 0.90225 0.88887 1.05376 1.20693 0.88690 0.95955 0.90310 1.45654 1.24820 1.50200 1.14805 1.19994 0.81762 0.77961 0.88239 1.90691 1.75896 1.54515 1.23520 1.23357 0.99060 1.04379 1.01187 1.85539 1.25709 1.62264 1.18670 1.23201 1.12423 1.36494 0.97150 0.90011 1.26104 0.98395 0.94324 1.00326 1.70179 1.26333 1.31571 1.26674 0.84980 0.77853 0.77777 0.77541 1.19349 1.20380 1.18233 1.23685 0.94671 1.04671 0.99990 1.23245 1.00918 1.03634 0.91627 0.89079 0.90256 0.88393 0.88624 0.88820 0.88788 0.91966 0.90240 0.82721 0.91504 0.91987 0.74866 0.87462 0.87442 0.92045 0.88155 0.86990 0.86889 0.87936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.39 71.24 0.74 -0.01 16 2 C 0.02 0.44 7.33 43.58 0.32 0.76 16 3 N -0.40 -9.35 12.07 -49.57 -0.60 -9.95 16 4 O 0.07 1.68 11.20 71.63 0.80 2.48 16 5 C -0.01 -0.15 7.49 25.04 0.19 0.04 16 6 C -0.07 -1.14 10.30 71.23 0.73 -0.40 16 7 C -0.21 -3.60 5.82 -19.73 -0.11 -3.72 16 8 C 0.15 1.99 5.82 85.56 0.50 2.49 16 9 N -0.64 -8.16 6.67 -474.16 -3.16 -11.32 16 10 C 0.03 0.40 1.86 3.53 0.01 0.41 16 11 C 0.17 3.37 5.72 86.38 0.49 3.86 16 12 N -0.70 -16.59 5.49 -463.07 -2.54 -19.13 16 13 C 0.53 18.87 7.85 87.66 0.69 19.56 16 14 O -0.57 -25.30 15.86 -3.05 -0.05 -25.35 16 15 C -0.13 -4.96 6.16 71.24 0.44 -4.52 16 16 S -0.15 -8.15 20.57 -56.49 -1.16 -9.31 16 17 C -0.54 -30.80 9.50 67.95 0.65 -30.15 16 18 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 19 C 0.01 0.75 5.49 84.86 0.47 1.21 16 20 N -0.91 -55.60 13.22 21.65 0.29 -55.32 16 21 Si 1.00 43.29 29.55 68.60 2.03 45.32 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 24 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 25 C -0.19 -1.71 10.07 30.59 0.31 -1.40 16 26 C -0.16 -1.52 9.71 30.59 0.30 -1.22 16 27 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.10 0.54 8.14 -2.39 -0.02 0.53 16 30 H 0.10 1.45 8.14 -2.39 -0.02 1.44 16 31 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.09 1.46 7.43 -2.39 -0.02 1.44 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.08 1.30 5.97 -2.39 -0.01 1.28 16 35 H 0.35 3.64 8.58 -89.69 -0.77 2.87 16 36 H 0.07 1.42 7.91 -2.39 -0.02 1.40 16 37 H 0.06 1.43 6.51 -2.39 -0.02 1.42 16 38 H 0.41 7.66 8.28 -92.71 -0.77 6.89 16 39 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 40 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 41 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 42 H 0.10 0.98 8.06 -2.39 -0.02 0.96 16 43 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -77.48 397.85 0.80 -76.68 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -0.51 Total: 18.98 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 5.71 Total: -13.09 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -6.02 Total: -95.71 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: 0.75 Total: -22.87 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: -8.15 SS G_CDS: -1.16 Total: -9.31 kcal Total: -77.48 0.80 -76.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277007360.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.572 kcal (2) G-P(sol) polarization free energy of solvation -77.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds