Wall clock time and date at job start Tue Mar 31 2020 22:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30255 * 125.62462 * 2 1 4 4 C 1.34473 * 108.70215 * 179.77887 * 3 2 1 5 5 C 1.50697 * 126.16946 * 180.26806 * 4 3 2 6 6 N 1.46907 * 109.47051 * 270.14717 * 5 4 3 7 7 C 1.47473 * 110.99692 * 265.96586 * 6 5 4 8 8 C 1.53518 * 87.93314 * 221.29659 * 7 6 5 9 9 N 1.46501 * 114.34297 * 272.36772 * 8 7 6 10 10 C 1.46501 * 119.99871 * 33.92063 * 9 8 7 11 11 C 1.34777 * 119.99861 * 213.92294 * 9 8 7 12 12 O 1.21280 * 119.99964 * 0.02562 * 11 9 8 13 13 C 1.50701 * 120.00230 * 180.02562 * 11 9 8 14 14 S 1.80990 * 109.47327 * 179.97438 * 13 11 9 15 15 C 1.76197 * 100.00003 * 179.97438 * 14 13 11 16 16 H 1.07996 * 119.99998 * 359.97438 * 15 14 13 17 17 C 1.38803 * 120.00288 * 180.02562 * 15 14 13 18 18 N 1.31628 * 119.99637 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00240 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47199 * 59.99767 * 19 17 15 21 21 H 1.48501 * 109.46904 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47119 * 299.99556 * 19 17 15 23 23 C 1.47480 * 110.99763 * 169.99401 * 6 5 4 24 24 C 1.34329 * 107.66933 * 0.39181 * 4 3 2 25 25 C 1.50706 * 126.44652 * 179.87869 * 24 4 3 26 26 O 1.33970 * 125.61641 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47563 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.46792 * 300.00372 * 1 2 3 29 29 H 1.08999 * 109.47065 * 59.99821 * 1 2 3 30 30 H 1.09001 * 109.47206 * 30.13893 * 5 4 3 31 31 H 1.08998 * 109.47913 * 150.14635 * 5 4 3 32 32 H 1.08999 * 113.47851 * 336.06119 * 7 6 5 33 33 H 1.09000 * 113.47582 * 106.53562 * 7 6 5 34 34 H 1.08997 * 114.16723 * 139.67311 * 8 7 6 35 35 H 1.09004 * 109.46739 * 90.00704 * 10 9 8 36 36 H 1.09000 * 109.46760 * 209.99412 * 10 9 8 37 37 H 1.08995 * 109.47365 * 330.00127 * 10 9 8 38 38 H 1.09000 * 109.46446 * 299.99993 * 13 11 9 39 39 H 1.09000 * 109.46755 * 59.99285 * 13 11 9 40 40 H 0.97002 * 119.99913 * 179.97438 * 18 17 15 41 41 H 1.08997 * 113.47953 * 253.46450 * 23 6 5 42 42 H 1.08999 * 113.47807 * 23.94305 * 23 6 5 43 43 H 1.08995 * 109.47411 * 179.70979 * 25 24 4 44 44 H 1.08998 * 109.46596 * 299.70918 * 25 24 4 45 45 H 1.09004 * 109.46950 * 59.70738 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5522 0.6674 0.0049 5 6 4.7571 1.5724 0.0124 6 7 5.1528 1.8724 -1.3703 7 6 6.1928 0.9368 -1.8371 8 6 6.8919 2.1321 -2.5001 9 7 6.4325 2.4216 -3.8607 10 6 5.0317 2.1948 -4.2248 11 6 7.2987 2.8967 -4.7775 12 8 8.4585 3.0840 -4.4762 13 6 6.8262 3.1952 -6.1771 14 16 8.2121 3.8148 -7.1626 15 6 7.3996 4.0733 -8.7045 16 1 6.3475 3.8511 -8.8044 17 6 8.1121 4.5613 -9.7912 18 7 9.3945 4.8316 -9.6696 19 14 7.2509 4.8347 -11.4261 20 1 6.1509 5.8162 -11.2482 21 1 8.2251 5.3579 -12.4173 22 1 6.6920 3.5477 -11.9125 23 6 6.1723 2.9373 -1.4090 24 6 3.5697 -0.6758 -0.0008 25 6 4.7936 -1.5552 -0.0008 26 8 2.2872 -1.0891 -0.0005 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 4.5116 2.5000 0.5293 31 1 5.5807 1.0769 0.5265 32 1 6.7703 0.4903 -1.0277 33 1 5.8248 0.1990 -2.5501 34 1 7.9776 2.1228 -2.4051 35 1 4.4554 3.1000 -4.0333 36 1 4.9680 1.9406 -5.2828 37 1 4.6297 1.3752 -3.6293 38 1 6.4359 2.2841 -6.6307 39 1 6.0399 3.9492 -6.1420 40 1 9.8926 5.1723 -10.4290 41 1 5.7869 3.8949 -1.7591 42 1 6.7443 3.0246 -0.4853 43 1 4.4891 -2.6017 -0.0010 44 1 5.3885 -1.3497 -0.8908 45 1 5.3885 -1.3500 0.8892 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277555230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:18 Heat of formation + Delta-G solvation = 36.277444 kcal Electronic energy + Delta-G solvation = -26670.228802 eV Core-core repulsion = 22817.644995 eV Total energy + Delta-G solvation = -3852.583807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.63891 -40.92098 -38.63151 -35.51054 -34.60555 -33.69168 -32.40721 -30.67961 -30.51858 -28.78549 -27.03853 -26.23371 -25.63443 -25.40222 -23.99821 -21.96200 -20.87328 -20.77716 -18.57983 -17.71139 -17.26526 -17.08512 -16.76114 -16.24071 -15.63384 -15.42440 -15.09741 -14.92607 -14.78351 -14.40383 -14.12407 -13.87398 -13.82552 -13.40297 -13.22734 -13.15770 -12.95938 -12.83803 -12.63012 -12.54645 -12.28304 -12.10622 -11.94031 -11.74459 -11.73083 -11.05843 -11.02930 -11.01194 -10.98748 -10.73995 -10.69856 -9.79476 -9.42818 -9.17222 -9.03747 -8.80607 -8.46379 -8.20799 -6.47819 -6.19415 -3.89827 1.11722 2.31487 2.34791 2.90591 3.02684 3.25294 3.27189 3.30682 3.59401 3.62201 3.81790 4.22656 4.25372 4.39332 4.46023 4.56814 4.66182 4.73254 4.91236 4.95460 4.97179 4.98049 5.05415 5.10164 5.15559 5.17858 5.25821 5.30746 5.34847 5.38696 5.54156 5.63343 5.64186 5.70706 5.76327 5.82640 5.93432 5.94758 6.00491 6.04496 6.18478 6.65024 6.71899 7.48893 7.59104 7.61988 8.37376 8.56936 9.25774 10.87957 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019400 B = 0.002117 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.969508 B =13220.123804 C =14071.194933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.183 3.817 3 N -0.467 5.467 4 C 0.006 3.994 5 C 0.100 3.900 6 N -0.459 5.459 7 C -0.018 4.018 8 C 0.125 3.875 9 N -0.599 5.599 10 C 0.087 3.913 11 C 0.536 3.464 12 O -0.518 6.518 13 C -0.148 4.148 14 S -0.062 6.062 15 C -0.535 4.535 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.918 3.082 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C -0.014 4.014 24 C -0.045 4.045 25 C -0.071 4.071 26 O -0.203 6.203 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.269 0.731 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.916 -12.943 23.391 30.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.024 4.024 3 N -0.197 5.197 4 C -0.115 4.115 5 C -0.029 4.029 6 N -0.181 5.181 7 C -0.148 4.148 8 C 0.018 3.982 9 N -0.334 5.334 10 C -0.056 4.056 11 C 0.324 3.676 12 O -0.392 6.392 13 C -0.299 4.299 14 S 0.165 5.835 15 C -0.683 4.683 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.144 4.144 24 C -0.099 4.099 25 C -0.128 4.128 26 O -0.091 6.091 27 H 0.105 0.895 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.134 0.866 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.111 0.889 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.108 0.892 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.942 -11.947 23.393 29.738 hybrid contribution -1.216 -0.825 -0.791 1.669 sum -15.157 -12.772 22.602 30.062 Atomic orbital electron populations 1.20228 0.81350 1.04552 1.05071 1.26212 0.96372 0.78575 1.01234 1.70301 1.01578 1.30118 1.17712 1.21111 0.92917 0.91412 1.06022 1.20888 0.91907 0.98228 0.91844 1.69028 1.26053 1.04942 1.18100 1.24481 0.93105 0.97239 0.99941 1.21864 0.99715 0.94383 0.82208 1.47437 1.10435 1.66204 1.09290 1.21744 0.80982 1.02119 1.00753 1.20376 0.85257 0.75663 0.86265 1.90684 1.17573 1.50763 1.80160 1.23546 1.06631 1.04626 0.95067 1.85360 1.09014 1.83381 1.05756 1.22819 0.98148 1.50877 0.96440 0.90992 1.24989 0.94914 0.94750 0.98927 1.70009 1.07045 1.41640 1.31625 0.86227 0.79059 0.78696 0.81543 1.19935 1.20828 1.19949 1.24353 0.93052 0.98048 0.98941 1.23132 0.83879 0.95038 1.07868 1.20344 0.90174 0.98382 1.03851 1.84381 1.16557 1.37867 1.70299 0.89543 0.88630 0.88458 0.89094 0.91848 0.90041 0.89169 0.86606 0.92774 0.91389 0.90343 0.89214 0.89184 0.92158 0.88923 0.90231 0.90294 0.89237 0.89505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.28 10.51 36.01 0.38 0.10 16 2 C 0.18 1.79 8.34 -12.95 -0.11 1.68 16 3 N -0.47 -5.57 11.29 -7.36 -0.08 -5.65 16 4 C 0.01 0.06 6.69 -82.82 -0.55 -0.49 16 5 C 0.10 0.88 5.15 -4.97 -0.03 0.86 16 6 N -0.46 -4.53 4.90 -246.10 -1.21 -5.73 16 7 C -0.02 -0.16 5.55 -7.55 -0.04 -0.20 16 8 C 0.12 1.48 4.66 -67.71 -0.32 1.16 16 9 N -0.60 -8.73 3.11 -173.61 -0.54 -9.27 16 10 C 0.09 1.08 9.34 59.85 0.56 1.64 16 11 C 0.54 10.30 7.69 -10.98 -0.08 10.21 16 12 O -0.52 -11.73 15.37 5.56 0.09 -11.64 16 13 C -0.15 -3.07 4.71 36.01 0.17 -2.90 16 14 S -0.06 -1.69 20.57 -107.50 -2.21 -3.91 16 15 C -0.53 -15.34 9.50 30.94 0.29 -15.05 16 16 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 19 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 C -0.01 -0.14 7.31 -7.54 -0.06 -0.20 16 24 C -0.05 -0.43 7.39 -35.68 -0.26 -0.69 16 25 C -0.07 -0.41 9.96 36.01 0.36 -0.05 16 26 O -0.20 -2.09 10.78 5.36 0.06 -2.03 16 27 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.10 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 31 H 0.06 0.42 7.05 -51.93 -0.37 0.05 16 32 H 0.08 0.53 7.28 -51.93 -0.38 0.15 16 33 H 0.09 0.84 7.14 -51.93 -0.37 0.47 16 34 H 0.12 1.49 7.28 -51.93 -0.38 1.12 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.83 6.44 -51.93 -0.33 0.50 16 37 H 0.08 0.90 5.70 -51.93 -0.30 0.61 16 38 H 0.09 1.73 7.40 -51.92 -0.38 1.35 16 39 H 0.09 1.76 8.11 -51.92 -0.42 1.34 16 40 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.08 0.63 7.91 -51.93 -0.41 0.22 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.48 6.61 -51.93 -0.34 0.13 16 45 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 384.52 15.07 5.79 5.79 Total: -1.00 -36.72 384.52 -8.79 -45.50 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -6.61 Total: -2.12 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 0.22 Total: -1.92 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: -1.10 Total: -46.22 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.14 Total: -13.67 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.72 -8.79 -45.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277555230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.780 kcal (2) G-P(sol) polarization free energy of solvation -36.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds