Wall clock time and date at job start Tue Mar 31 2020 22:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30255 * 125.62462 * 2 1 4 4 C 1.34473 * 108.70215 * 179.77887 * 3 2 1 5 5 C 1.50697 * 126.16946 * 180.26806 * 4 3 2 6 6 N 1.46907 * 109.47051 * 270.14717 * 5 4 3 7 7 C 1.47473 * 110.99692 * 265.96586 * 6 5 4 8 8 C 1.53518 * 87.93314 * 221.29659 * 7 6 5 9 9 N 1.46501 * 114.34297 * 272.36772 * 8 7 6 10 10 C 1.46501 * 119.99871 * 33.92063 * 9 8 7 11 11 C 1.34777 * 119.99861 * 213.92294 * 9 8 7 12 12 O 1.21280 * 119.99964 * 0.02562 * 11 9 8 13 13 C 1.50701 * 120.00230 * 180.02562 * 11 9 8 14 14 S 1.80990 * 109.47327 * 179.97438 * 13 11 9 15 15 C 1.76197 * 100.00003 * 179.97438 * 14 13 11 16 16 H 1.07996 * 119.99998 * 359.97438 * 15 14 13 17 17 C 1.38803 * 120.00288 * 180.02562 * 15 14 13 18 18 N 1.31628 * 119.99637 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00240 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47199 * 59.99767 * 19 17 15 21 21 H 1.48501 * 109.46904 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47119 * 299.99556 * 19 17 15 23 23 C 1.47480 * 110.99763 * 169.99401 * 6 5 4 24 24 C 1.34329 * 107.66933 * 0.39181 * 4 3 2 25 25 C 1.50706 * 126.44652 * 179.87869 * 24 4 3 26 26 O 1.33970 * 125.61641 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47563 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.46792 * 300.00372 * 1 2 3 29 29 H 1.08999 * 109.47065 * 59.99821 * 1 2 3 30 30 H 1.09001 * 109.47206 * 30.13893 * 5 4 3 31 31 H 1.08998 * 109.47913 * 150.14635 * 5 4 3 32 32 H 1.08999 * 113.47851 * 336.06119 * 7 6 5 33 33 H 1.09000 * 113.47582 * 106.53562 * 7 6 5 34 34 H 1.08997 * 114.16723 * 139.67311 * 8 7 6 35 35 H 1.09004 * 109.46739 * 90.00704 * 10 9 8 36 36 H 1.09000 * 109.46760 * 209.99412 * 10 9 8 37 37 H 1.08995 * 109.47365 * 330.00127 * 10 9 8 38 38 H 1.09000 * 109.46446 * 299.99993 * 13 11 9 39 39 H 1.09000 * 109.46755 * 59.99285 * 13 11 9 40 40 H 0.97002 * 119.99913 * 179.97438 * 18 17 15 41 41 H 1.08997 * 113.47953 * 253.46450 * 23 6 5 42 42 H 1.08999 * 113.47807 * 23.94305 * 23 6 5 43 43 H 1.08995 * 109.47411 * 179.70979 * 25 24 4 44 44 H 1.08998 * 109.46596 * 299.70918 * 25 24 4 45 45 H 1.09004 * 109.46950 * 59.70738 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5522 0.6674 0.0049 5 6 4.7571 1.5724 0.0124 6 7 5.1528 1.8724 -1.3703 7 6 6.1928 0.9368 -1.8371 8 6 6.8919 2.1321 -2.5001 9 7 6.4325 2.4216 -3.8607 10 6 5.0317 2.1948 -4.2248 11 6 7.2987 2.8967 -4.7775 12 8 8.4585 3.0840 -4.4762 13 6 6.8262 3.1952 -6.1771 14 16 8.2121 3.8148 -7.1626 15 6 7.3996 4.0733 -8.7045 16 1 6.3475 3.8511 -8.8044 17 6 8.1121 4.5613 -9.7912 18 7 9.3945 4.8316 -9.6696 19 14 7.2509 4.8347 -11.4261 20 1 6.1509 5.8162 -11.2482 21 1 8.2251 5.3579 -12.4173 22 1 6.6920 3.5477 -11.9125 23 6 6.1723 2.9373 -1.4090 24 6 3.5697 -0.6758 -0.0008 25 6 4.7936 -1.5552 -0.0008 26 8 2.2872 -1.0891 -0.0005 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 4.5116 2.5000 0.5293 31 1 5.5807 1.0769 0.5265 32 1 6.7703 0.4903 -1.0277 33 1 5.8248 0.1990 -2.5501 34 1 7.9776 2.1228 -2.4051 35 1 4.4554 3.1000 -4.0333 36 1 4.9680 1.9406 -5.2828 37 1 4.6297 1.3752 -3.6293 38 1 6.4359 2.2841 -6.6307 39 1 6.0399 3.9492 -6.1420 40 1 9.8926 5.1723 -10.4290 41 1 5.7869 3.8949 -1.7591 42 1 6.7443 3.0246 -0.4853 43 1 4.4891 -2.6017 -0.0010 44 1 5.3885 -1.3497 -0.8908 45 1 5.3885 -1.3500 0.8892 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277555230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:17 Heat of formation + Delta-G solvation = 8.048540 kcal Electronic energy + Delta-G solvation = -26671.452899 eV Core-core repulsion = 22817.644995 eV Total energy + Delta-G solvation = -3853.807904 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.32074 -41.88057 -39.97246 -36.41507 -35.64868 -34.58353 -34.35373 -31.69085 -30.97529 -30.10203 -28.07019 -27.67669 -26.98500 -26.33944 -24.74244 -22.68058 -22.00174 -21.46821 -19.97222 -19.42045 -18.32531 -17.94427 -17.62180 -17.24842 -16.87770 -16.85828 -16.40651 -16.22233 -15.82671 -15.59726 -15.01083 -14.72905 -14.55956 -14.51092 -14.32045 -14.24616 -13.58673 -13.55118 -13.54644 -13.47672 -13.24050 -13.17233 -13.10765 -12.99384 -12.87042 -12.68044 -12.60128 -12.48943 -11.88519 -11.83659 -11.70020 -11.42006 -11.12802 -10.93386 -10.28113 -9.93624 -9.66455 -9.45306 -8.67037 -8.34318 -6.12570 0.45744 1.24535 1.43960 1.44805 1.52831 1.55158 1.60843 1.76319 2.06450 2.27688 2.94392 2.99495 3.12845 3.26038 3.46394 3.72565 3.75860 3.80878 3.81340 4.11751 4.18977 4.24228 4.28228 4.32457 4.39693 4.46692 4.48769 4.59496 4.61945 4.63820 4.65266 4.67154 4.74085 4.80211 4.85582 4.91720 4.99967 5.10787 5.19454 5.24166 5.40006 5.41630 5.59178 5.93647 6.19731 6.28308 6.80335 7.06645 7.11871 8.74646 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019400 B = 0.002117 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.969508 B =13220.123804 C =14071.194933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.176 3.824 3 N -0.506 5.506 4 C -0.018 4.018 5 C 0.104 3.896 6 N -0.472 5.472 7 C 0.000 4.000 8 C 0.104 3.896 9 N -0.585 5.585 10 C 0.088 3.912 11 C 0.536 3.464 12 O -0.561 6.561 13 C -0.124 4.124 14 S -0.147 6.147 15 C -0.547 4.547 16 H 0.081 0.919 17 C 0.014 3.986 18 N -0.910 5.910 19 Si 0.998 3.002 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.003 4.003 24 C -0.048 4.048 25 C -0.071 4.071 26 O -0.215 6.215 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.271 0.729 41 H 0.075 0.925 42 H 0.105 0.895 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.882 -14.374 24.085 32.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.031 4.031 3 N -0.236 5.236 4 C -0.138 4.138 5 C -0.024 4.024 6 N -0.195 5.195 7 C -0.130 4.130 8 C -0.001 4.001 9 N -0.318 5.318 10 C -0.054 4.054 11 C 0.324 3.676 12 O -0.439 6.439 13 C -0.275 4.275 14 S 0.080 5.920 15 C -0.695 4.695 16 H 0.099 0.901 17 C -0.191 4.191 18 N -0.546 5.546 19 Si 0.820 3.180 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.186 1.186 23 C -0.133 4.133 24 C -0.102 4.102 25 C -0.127 4.127 26 O -0.103 6.103 27 H 0.123 0.877 28 H 0.126 0.874 29 H 0.121 0.879 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.132 0.868 33 H 0.108 0.892 34 H 0.121 0.879 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.111 0.889 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.123 0.877 43 H 0.105 0.895 44 H 0.115 0.885 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.950 -13.398 24.130 31.877 hybrid contribution -0.696 -0.434 -0.854 1.184 sum -16.645 -13.833 23.276 31.783 Atomic orbital electron populations 1.20450 0.78713 1.06081 1.05865 1.27060 0.97795 0.78132 1.00130 1.70289 1.02675 1.31395 1.19245 1.21407 0.92978 0.92259 1.07108 1.20908 0.92254 0.98013 0.91206 1.68999 1.26271 1.05027 1.19240 1.24463 0.92378 0.95837 1.00276 1.22125 0.99496 0.97444 0.81062 1.47363 1.10524 1.64182 1.09719 1.21856 0.79537 1.02767 1.01248 1.20084 0.85174 0.76063 0.86324 1.90666 1.19374 1.53154 1.80742 1.23367 1.03631 1.05242 0.95220 1.85503 1.14203 1.84443 1.07830 1.23154 0.98574 1.51043 0.96740 0.90082 1.26124 0.95625 0.94074 1.03281 1.70173 1.08911 1.42584 1.32979 0.85011 0.77922 0.79168 0.75945 1.18759 1.20277 1.18628 1.24279 0.92886 0.97087 0.99043 1.23764 0.84434 0.95314 1.06677 1.20527 0.88904 0.98205 1.05076 1.84398 1.17159 1.38253 1.70473 0.87659 0.87420 0.87885 0.89859 0.89140 0.86805 0.89232 0.87856 0.92533 0.91076 0.88905 0.87513 0.87920 0.91958 0.90691 0.87664 0.89535 0.88547 0.87471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.47 10.51 71.24 0.75 0.28 16 2 C 0.18 3.25 8.34 88.34 0.74 3.98 16 3 N -0.51 -11.63 11.29 -291.98 -3.30 -14.93 16 4 C -0.02 -0.35 6.69 41.26 0.28 -0.07 16 5 C 0.10 1.61 5.15 85.55 0.44 2.05 16 6 N -0.47 -8.29 4.90 -932.52 -4.57 -12.86 16 7 C 0.00 -0.01 5.55 83.58 0.46 0.46 16 8 C 0.10 2.33 4.66 45.45 0.21 2.54 16 9 N -0.59 -16.55 3.11 -821.58 -2.56 -19.11 16 10 C 0.09 2.04 9.34 127.77 1.19 3.24 16 11 C 0.54 20.70 7.69 87.66 0.67 21.37 16 12 O -0.56 -26.18 15.37 -3.03 -0.05 -26.23 16 13 C -0.12 -5.13 4.71 71.24 0.34 -4.79 16 14 S -0.15 -8.30 20.57 -56.49 -1.16 -9.46 16 15 C -0.55 -31.68 9.50 67.96 0.65 -31.04 16 16 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 17 C 0.01 0.79 5.49 84.86 0.47 1.26 16 18 N -0.91 -56.26 13.22 21.65 0.29 -55.97 16 19 Si 1.00 43.98 29.55 68.60 2.03 46.01 16 20 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 21 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 23 C 0.00 -0.06 7.31 83.58 0.61 0.55 16 24 C -0.05 -0.81 7.39 24.79 0.18 -0.63 16 25 C -0.07 -0.60 9.96 71.24 0.71 0.11 16 26 O -0.21 -4.11 10.78 -3.74 -0.04 -4.15 16 27 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.10 0.78 8.14 -2.39 -0.02 0.77 16 30 H 0.08 1.41 8.08 -2.39 -0.02 1.39 16 31 H 0.09 0.86 7.05 -2.39 -0.02 0.84 16 32 H 0.11 1.00 7.28 -2.39 -0.02 0.98 16 33 H 0.09 1.41 7.14 -2.39 -0.02 1.39 16 34 H 0.10 2.62 7.28 -2.39 -0.02 2.60 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.61 6.44 -2.39 -0.02 1.60 16 37 H 0.09 1.93 5.70 -2.39 -0.01 1.92 16 38 H 0.11 4.04 7.40 -2.39 -0.02 4.02 16 39 H 0.10 3.97 8.11 -2.40 -0.02 3.95 16 40 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 41 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.11 1.40 7.91 -2.39 -0.02 1.38 16 43 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.10 0.69 6.61 -2.39 -0.02 0.68 16 45 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -82.66 384.52 -0.67 -83.33 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 1.00 Total: 14.07 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 7.70 Total: -0.70 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -10.14 Total: -102.87 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.09 Total: -30.38 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.46 kcal Total: -82.66 -0.67 -83.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277555230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.374 kcal (2) G-P(sol) polarization free energy of solvation -82.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds