Wall clock time and date at job start Tue Mar 31 2020 22:49:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 C 1.35447 * 128.00726 * 2 1
4 4 O 1.34044 * 106.44791 * 179.97438 * 3 2 1
5 5 N 1.20925 * 111.56476 * 359.71155 * 4 3 2
6 6 C 1.30177 * 111.60405 * 0.48412 * 5 4 3
7 7 C 1.50700 * 126.80064 * 179.79297 * 6 5 4
8 8 N 1.46892 * 109.47119 * 269.68572 * 7 6 5
9 9 C 1.46905 * 111.00080 * 180.02562 * 8 7 6
10 10 H 1.09005 * 110.90938 * 37.44940 * 9 8 7
11 11 C 1.55154 * 111.00458 * 161.34802 * 9 8 7
12 12 C 1.54345 * 103.01589 * 153.38382 * 11 9 8
13 13 H 1.08997 * 109.77565 * 97.50082 * 12 11 9
14 14 C 1.53001 * 109.98625 * 218.66665 * 12 11 9
15 15 N 1.47020 * 107.26479 * 338.14187 * 12 11 9
16 16 C 1.34771 * 125.64528 * 178.85054 * 15 12 11
17 17 O 1.21289 * 120.00201 * 359.71563 * 16 15 12
18 18 C 1.50704 * 120.00220 * 179.71481 * 16 15 12
19 19 S 1.80998 * 109.47205 * 179.97438 * 18 16 15
20 20 C 1.76204 * 99.99645 * 180.02562 * 19 18 16
21 21 H 1.08000 * 120.00111 * 0.02562 * 20 19 18
22 22 C 1.38802 * 119.99720 * 179.97438 * 20 19 18
23 23 N 1.31632 * 120.00093 * 0.02562 * 22 20 19
24 24 Si 1.86798 * 120.00020 * 180.02562 * 22 20 19
25 25 H 1.48506 * 109.47297 * 90.00077 * 24 22 20
26 26 H 1.48503 * 109.47261 * 330.00257 * 24 22 20
27 27 H 1.48500 * 109.47454 * 210.00251 * 24 22 20
28 28 C 1.47421 * 108.70508 * 358.58656 * 15 12 11
29 29 H 1.08995 * 109.47171 * 270.03932 * 1 2 3
30 30 H 1.08999 * 109.47162 * 30.04026 * 1 2 3
31 31 H 1.09000 * 109.47144 * 150.03996 * 1 2 3
32 32 H 1.07998 * 126.77960 * 359.97438 * 3 2 1
33 33 H 1.09005 * 109.46450 * 149.68883 * 7 6 5
34 34 H 1.08994 * 109.46999 * 29.69050 * 7 6 5
35 35 H 1.00899 * 111.00617 * 303.95564 * 8 7 6
36 36 H 1.08998 * 110.72227 * 271.94177 * 11 9 8
37 37 H 1.09002 * 110.72180 * 35.22037 * 11 9 8
38 38 H 1.09000 * 109.46857 * 179.31964 * 14 12 11
39 39 H 1.08998 * 109.47362 * 299.31938 * 14 12 11
40 40 H 1.08995 * 109.47427 * 59.32448 * 14 12 11
41 41 H 1.09004 * 109.46909 * 59.99989 * 18 16 15
42 42 H 1.08994 * 109.46860 * 300.00327 * 18 16 15
43 43 H 0.96993 * 120.00092 * 359.97438 * 23 22 20
44 44 H 1.09001 * 110.36660 * 143.19411 * 28 15 12
45 45 H 1.09003 * 110.36629 * 265.40687 * 28 15 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3411 1.0672 0.0000
4 8 3.5877 0.5747 0.0006
5 7 3.5878 -0.6346 0.0066
6 6 2.3776 -1.1140 0.0005
7 6 1.9827 -2.5684 0.0006
8 7 1.8549 -3.0411 -1.3842
9 6 1.4695 -4.4582 -1.4234
10 1 0.7640 -4.6916 -0.6259
11 6 0.8869 -4.8380 -2.8103
12 6 1.1900 -6.3479 -2.9130
13 1 0.3091 -6.9214 -2.6247
14 6 1.6003 -6.7028 -4.3436
15 7 2.2975 -6.6345 -1.9895
16 6 2.8435 -7.8469 -1.7701
17 8 2.4173 -8.8191 -2.3569
18 6 3.9836 -7.9948 -0.7957
19 16 4.4925 -9.7302 -0.7214
20 6 5.7980 -9.6159 0.4565
21 1 6.0529 -8.6597 0.8891
22 6 6.4979 -10.7551 0.8293
23 7 6.1869 -11.9206 0.3025
24 14 7.8814 -10.6342 2.0786
25 1 7.3326 -10.8259 3.4452
26 1 8.5181 -9.2959 1.9842
27 1 8.8934 -11.6846 1.7998
28 6 2.7160 -5.3749 -1.3479
29 1 -0.3633 0.0007 1.0276
30 1 -0.3633 0.8896 -0.5144
31 1 -0.3633 -0.8903 -0.5132
32 1 2.0577 2.1094 -0.0004
33 1 1.0284 -2.6856 0.5142
34 1 2.7462 -3.1521 0.5149
35 1 1.1994 -2.4741 -1.9009
36 1 -0.1872 -4.6550 -2.8407
37 1 1.3950 -4.2915 -3.6048
38 1 1.8240 -7.7679 -4.4038
39 1 0.7843 -6.4638 -5.0256
40 1 2.4851 -6.1297 -4.6206
41 1 3.6612 -7.6684 0.1930
42 1 4.8238 -7.3831 -1.1242
43 1 5.4683 -11.9835 -0.3459
44 1 2.9940 -5.5524 -0.3090
45 1 3.5493 -4.9305 -1.8922
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001278344748.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:49:49
Heat of formation + Delta-G solvation = 23.519672 kcal
Electronic energy + Delta-G solvation = -26524.011442 eV
Core-core repulsion = 22670.874417 eV
Total energy + Delta-G solvation = -3853.137025 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-45.31250 -40.18457 -37.95435 -36.37514 -34.52071 -32.63449 -32.50601 -32.20705
-30.08427 -28.83229 -28.59078 -26.19803 -25.99316 -24.81925 -22.23573 -22.01350
-21.57534 -21.08968 -19.02055 -18.17891 -17.94142 -17.84347 -17.04477 -16.63317
-15.87931 -15.25837 -14.96010 -14.81708 -14.71046 -14.32396 -13.93992 -13.83931
-13.81649 -13.74016 -13.29882 -13.21514 -12.96569 -12.87439 -12.62250 -12.44086
-12.33728 -12.11483 -11.93805 -11.70293 -11.46834 -11.42160 -11.11797 -10.96999
-10.88951 -10.38015 -10.17037 -9.79123 -9.55934 -9.44947 -9.01899 -8.99089
-8.54695 -8.20000 -6.65126 -6.60310 -3.97877 1.11888 1.73148 2.78650
2.88118 2.99120 3.32852 3.40112 3.42808 3.57702 3.64276 3.82799
4.04472 4.19599 4.25831 4.35689 4.41178 4.59047 4.70492 4.84995
4.95734 4.97268 5.00524 5.09372 5.15218 5.24137 5.24416 5.27499
5.28388 5.31088 5.38793 5.47643 5.50853 5.57999 5.64422 5.67943
5.72228 5.81691 6.01844 6.05076 6.23766 6.43555 6.52034 6.80364
7.62409 7.92283 7.95114 8.49409 8.52326 9.29157 10.83753
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.011022 B = 0.002528 C = 0.002116
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2539.808264 B =11075.077088 C =13230.765657
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 C -0.200 4.200
3 C -0.066 4.066
4 O 0.105 5.895
5 N -0.342 5.342
6 C 0.019 3.981
7 C 0.136 3.864
8 N -0.670 5.670
9 C 0.073 3.927
10 H 0.066 0.934
11 C -0.127 4.127
12 C 0.140 3.860
13 H 0.075 0.925
14 C -0.163 4.163
15 N -0.621 5.621
16 C 0.549 3.451
17 O -0.514 6.514
18 C -0.124 4.124
19 S -0.117 6.117
20 C -0.606 4.606
21 H 0.066 0.934
22 C 0.035 3.965
23 N -0.885 5.885
24 Si 1.087 2.913
25 H -0.284 1.284
26 H -0.287 1.287
27 H -0.280 1.280
28 C 0.112 3.888
29 H 0.073 0.927
30 H 0.073 0.927
31 H 0.068 0.932
32 H 0.215 0.785
33 H 0.057 0.943
34 H 0.094 0.906
35 H 0.347 0.653
36 H 0.080 0.920
37 H 0.088 0.912
38 H 0.073 0.927
39 H 0.061 0.939
40 H 0.056 0.944
41 H 0.090 0.910
42 H 0.091 0.909
43 H 0.278 0.722
44 H 0.075 0.925
45 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.384 29.083 -2.715 33.013
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.205 4.205
3 C -0.147 4.147
4 O 0.036 5.964
5 N -0.043 5.043
6 C -0.141 4.141
7 C 0.006 3.994
8 N -0.303 5.303
9 C -0.037 4.037
10 H 0.084 0.916
11 C -0.165 4.165
12 C 0.036 3.964
13 H 0.093 0.907
14 C -0.221 4.221
15 N -0.359 5.359
16 C 0.338 3.662
17 O -0.389 6.389
18 C -0.275 4.275
19 S 0.110 5.890
20 C -0.754 4.754
21 H 0.084 0.916
22 C -0.175 4.175
23 N -0.519 5.519
24 Si 0.913 3.087
25 H -0.211 1.211
26 H -0.213 1.213
27 H -0.205 1.205
28 C -0.013 4.013
29 H 0.092 0.908
30 H 0.092 0.908
31 H 0.087 0.913
32 H 0.231 0.769
33 H 0.075 0.925
34 H 0.113 0.887
35 H 0.166 0.834
36 H 0.099 0.901
37 H 0.107 0.893
38 H 0.092 0.908
39 H 0.080 0.920
40 H 0.076 0.924
41 H 0.108 0.892
42 H 0.110 0.890
43 H 0.090 0.910
44 H 0.093 0.907
45 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -12.953 25.941 -2.829 29.133
hybrid contribution -2.280 2.620 0.295 3.486
sum -15.234 28.560 -2.534 32.468
Atomic orbital electron populations
1.20091 0.87414 1.03154 1.02755 1.21351 0.98612 0.91783 1.08723
1.25776 0.83306 1.01143 1.04455 1.84875 1.29040 1.15655 1.66807
1.73922 1.22281 0.91015 1.17106 1.23295 0.88591 0.97884 1.04333
1.20220 1.01088 0.87448 0.90604 1.60259 1.55011 1.02455 1.12544
1.22666 0.95880 0.87453 0.97700 0.91641 1.22893 1.01327 0.95287
0.96972 1.21424 0.90037 0.94477 0.90498 0.90737 1.22136 1.01340
1.03762 0.94843 1.48506 1.36286 1.07113 1.43983 1.19953 0.83027
0.80848 0.82404 1.90693 1.61896 1.36927 1.49342 1.23302 0.98264
1.05738 1.00242 1.84787 1.44461 1.01612 1.58169 1.23724 1.21681
0.99743 1.30239 0.91602 1.26056 1.00597 0.91232 0.99657 1.70766
1.29378 1.24979 1.26797 0.83293 0.74894 0.75667 0.74857 1.21073
1.21260 1.20499 1.22233 0.96870 0.83529 0.98632 0.90786 0.90827
0.91258 0.76875 0.92493 0.88741 0.83368 0.90095 0.89329 0.90792
0.91982 0.92443 0.89196 0.89038 0.90970 0.90700 0.90224
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.26 10.37 36.01 0.37 0.11 16
2 C -0.20 -1.27 6.32 -104.42 -0.66 -1.93 16
3 C -0.07 -0.37 12.26 29.74 0.36 0.00 16
4 O 0.10 0.95 11.20 17.16 0.19 1.15 16
5 N -0.34 -3.82 12.07 33.42 0.40 -3.42 16
6 C 0.02 0.17 6.84 -82.10 -0.56 -0.39 16
7 C 0.14 1.08 6.06 -4.98 -0.03 1.05 16
8 N -0.67 -5.22 6.36 -105.73 -0.67 -5.89 16
9 C 0.07 0.62 3.32 -65.56 -0.22 0.40 16
10 H 0.07 0.53 7.92 -51.93 -0.41 0.12 16
11 C -0.13 -1.01 5.96 -24.89 -0.15 -1.16 16
12 C 0.14 1.66 3.46 -66.94 -0.23 1.43 16
13 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16
14 C -0.16 -1.99 9.11 37.16 0.34 -1.65 16
15 N -0.62 -9.15 3.06 -163.01 -0.50 -9.65 16
16 C 0.55 10.81 7.66 -10.99 -0.08 10.72 16
17 O -0.51 -11.89 14.91 5.55 0.08 -11.81 16
18 C -0.12 -2.66 5.16 36.01 0.19 -2.47 16
19 S -0.12 -3.22 19.60 -107.50 -2.11 -5.33 16
20 C -0.61 -17.83 9.50 30.94 0.29 -17.54 16
21 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16
22 C 0.03 1.04 5.49 -17.43 -0.10 0.94 16
23 N -0.88 -27.94 13.67 55.49 0.76 -27.18 16
24 Si 1.09 25.49 29.92 -169.99 -5.09 20.41 16
25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
26 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16
27 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16
28 C 0.11 1.32 6.34 -2.53 -0.02 1.30 16
29 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16
30 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16
31 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16
32 H 0.21 0.26 8.06 -52.49 -0.42 -0.16 16
33 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16
34 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16
35 H 0.35 2.16 8.52 -39.29 -0.33 1.82 16
36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16
37 H 0.09 0.69 7.84 -51.93 -0.41 0.29 16
38 H 0.07 1.15 6.89 -51.93 -0.36 0.79 16
39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
41 H 0.09 1.80 7.85 -51.91 -0.41 1.39 16
42 H 0.09 1.87 8.14 -51.92 -0.42 1.45 16
43 H 0.28 8.96 7.12 -40.82 -0.29 8.67 16
44 H 0.07 0.89 7.48 -51.93 -0.39 0.51 16
45 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16
LS Contribution 388.95 15.07 5.86 5.86
Total: -1.00 -37.02 388.95 -8.43 -45.45
By element:
Atomic # 1 Polarization: 6.47 SS G_CDS: -6.87 Total: -0.40 kcal
Atomic # 6 Polarization: -8.69 SS G_CDS: -0.49 Total: -9.18 kcal
Atomic # 7 Polarization: -46.13 SS G_CDS: -0.01 Total: -46.14 kcal
Atomic # 8 Polarization: -10.94 SS G_CDS: 0.27 Total: -10.66 kcal
Atomic # 14 Polarization: 25.49 SS G_CDS: -5.09 Total: 20.41 kcal
Atomic # 16 Polarization: -3.22 SS G_CDS: -2.11 Total: -5.33 kcal
Total LS contribution 5.86 Total: 5.86 kcal
Total: -37.02 -8.43 -45.45 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001278344748.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.965 kcal
(2) G-P(sol) polarization free energy of solvation -37.016 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.949 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.445 kcal
(6) G-S(sol) free energy of system = (1) + (5) 23.520 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds