Wall clock time and date at job start Tue Mar 31 2020 22:49:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 C 1.35447 * 128.00726 * 2 1
4 4 O 1.34044 * 106.44791 * 179.97438 * 3 2 1
5 5 N 1.20925 * 111.56476 * 359.71155 * 4 3 2
6 6 C 1.30177 * 111.60405 * 0.48412 * 5 4 3
7 7 C 1.50700 * 126.80064 * 179.79297 * 6 5 4
8 8 N 1.46892 * 109.47119 * 269.68572 * 7 6 5
9 9 C 1.46905 * 111.00080 * 180.02562 * 8 7 6
10 10 H 1.09005 * 110.90938 * 37.44940 * 9 8 7
11 11 C 1.55154 * 111.00458 * 161.34802 * 9 8 7
12 12 C 1.54345 * 103.01589 * 153.38382 * 11 9 8
13 13 H 1.08997 * 109.77565 * 97.50082 * 12 11 9
14 14 C 1.53001 * 109.98625 * 218.66665 * 12 11 9
15 15 N 1.47020 * 107.26479 * 338.14187 * 12 11 9
16 16 C 1.34771 * 125.64528 * 178.85054 * 15 12 11
17 17 O 1.21289 * 120.00201 * 359.71563 * 16 15 12
18 18 C 1.50704 * 120.00220 * 179.71481 * 16 15 12
19 19 S 1.80998 * 109.47205 * 179.97438 * 18 16 15
20 20 C 1.76204 * 99.99645 * 180.02562 * 19 18 16
21 21 H 1.08000 * 120.00111 * 0.02562 * 20 19 18
22 22 C 1.38802 * 119.99720 * 179.97438 * 20 19 18
23 23 N 1.31632 * 120.00093 * 0.02562 * 22 20 19
24 24 Si 1.86798 * 120.00020 * 180.02562 * 22 20 19
25 25 H 1.48506 * 109.47297 * 90.00077 * 24 22 20
26 26 H 1.48503 * 109.47261 * 330.00257 * 24 22 20
27 27 H 1.48500 * 109.47454 * 210.00251 * 24 22 20
28 28 C 1.47421 * 108.70508 * 358.58656 * 15 12 11
29 29 H 1.08995 * 109.47171 * 270.03932 * 1 2 3
30 30 H 1.08999 * 109.47162 * 30.04026 * 1 2 3
31 31 H 1.09000 * 109.47144 * 150.03996 * 1 2 3
32 32 H 1.07998 * 126.77960 * 359.97438 * 3 2 1
33 33 H 1.09005 * 109.46450 * 149.68883 * 7 6 5
34 34 H 1.08994 * 109.46999 * 29.69050 * 7 6 5
35 35 H 1.00899 * 111.00617 * 303.95564 * 8 7 6
36 36 H 1.08998 * 110.72227 * 271.94177 * 11 9 8
37 37 H 1.09002 * 110.72180 * 35.22037 * 11 9 8
38 38 H 1.09000 * 109.46857 * 179.31964 * 14 12 11
39 39 H 1.08998 * 109.47362 * 299.31938 * 14 12 11
40 40 H 1.08995 * 109.47427 * 59.32448 * 14 12 11
41 41 H 1.09004 * 109.46909 * 59.99989 * 18 16 15
42 42 H 1.08994 * 109.46860 * 300.00327 * 18 16 15
43 43 H 0.96993 * 120.00092 * 359.97438 * 23 22 20
44 44 H 1.09001 * 110.36660 * 143.19411 * 28 15 12
45 45 H 1.09003 * 110.36629 * 265.40687 * 28 15 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3411 1.0672 0.0000
4 8 3.5877 0.5747 0.0006
5 7 3.5878 -0.6346 0.0066
6 6 2.3776 -1.1140 0.0005
7 6 1.9827 -2.5684 0.0006
8 7 1.8549 -3.0411 -1.3842
9 6 1.4695 -4.4582 -1.4234
10 1 0.7640 -4.6916 -0.6259
11 6 0.8869 -4.8380 -2.8103
12 6 1.1900 -6.3479 -2.9130
13 1 0.3091 -6.9214 -2.6247
14 6 1.6003 -6.7028 -4.3436
15 7 2.2975 -6.6345 -1.9895
16 6 2.8435 -7.8469 -1.7701
17 8 2.4173 -8.8191 -2.3569
18 6 3.9836 -7.9948 -0.7957
19 16 4.4925 -9.7302 -0.7214
20 6 5.7980 -9.6159 0.4565
21 1 6.0529 -8.6597 0.8891
22 6 6.4979 -10.7551 0.8293
23 7 6.1869 -11.9206 0.3025
24 14 7.8814 -10.6342 2.0786
25 1 7.3326 -10.8259 3.4452
26 1 8.5181 -9.2959 1.9842
27 1 8.8934 -11.6846 1.7998
28 6 2.7160 -5.3749 -1.3479
29 1 -0.3633 0.0007 1.0276
30 1 -0.3633 0.8896 -0.5144
31 1 -0.3633 -0.8903 -0.5132
32 1 2.0577 2.1094 -0.0004
33 1 1.0284 -2.6856 0.5142
34 1 2.7462 -3.1521 0.5149
35 1 1.1994 -2.4741 -1.9009
36 1 -0.1872 -4.6550 -2.8407
37 1 1.3950 -4.2915 -3.6048
38 1 1.8240 -7.7679 -4.4038
39 1 0.7843 -6.4638 -5.0256
40 1 2.4851 -6.1297 -4.6206
41 1 3.6612 -7.6684 0.1930
42 1 4.8238 -7.3831 -1.1242
43 1 5.4683 -11.9835 -0.3459
44 1 2.9940 -5.5524 -0.3090
45 1 3.5493 -4.9305 -1.8922
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001278344748.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:49:49
Heat of formation + Delta-G solvation = -2.876809 kcal
Electronic energy + Delta-G solvation = -26525.156079 eV
Core-core repulsion = 22670.874417 eV
Total energy + Delta-G solvation = -3854.281662 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-45.89250 -41.37923 -39.12639 -37.16462 -35.15139 -34.78341 -33.48200 -33.16439
-30.95020 -30.35422 -28.94707 -27.16332 -26.94162 -26.85012 -23.33247 -22.53706
-22.18631 -21.86229 -20.66987 -19.90235 -18.55792 -18.48194 -18.21520 -17.75241
-16.95746 -16.60081 -16.34463 -15.88765 -15.72950 -15.36827 -15.30162 -14.89192
-14.71935 -14.46203 -14.30230 -14.19541 -14.04491 -13.91764 -13.80336 -13.61365
-13.51702 -13.19773 -13.02427 -12.86231 -12.77436 -12.21181 -12.08223 -11.96922
-11.90050 -11.81467 -11.59443 -11.13739 -11.02729 -10.98656 -10.37871 -10.23019
-9.84533 -9.59020 -8.96492 -8.91960 -6.31890 0.63486 1.09244 1.20893
1.42986 1.48485 1.58757 1.77430 1.92898 2.29924 2.47737 2.91580
2.98672 3.08339 3.23201 3.37219 3.48215 3.61899 3.77262 3.95926
4.03778 4.04889 4.10349 4.18701 4.24454 4.31542 4.33751 4.35790
4.56193 4.61893 4.67726 4.74169 4.80078 4.82606 4.83969 4.89840
4.94087 5.01497 5.09189 5.22241 5.37706 5.40248 5.60133 5.81124
6.11451 6.24855 6.32941 6.99483 7.02524 7.39324 8.47042
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.011022 B = 0.002528 C = 0.002116
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2539.808264 B =11075.077088 C =13230.765657
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 C -0.205 4.205
3 C -0.058 4.058
4 O 0.087 5.913
5 N -0.391 5.391
6 C 0.006 3.994
7 C 0.138 3.862
8 N -0.673 5.673
9 C 0.088 3.912
10 H 0.079 0.921
11 C -0.109 4.109
12 C 0.129 3.871
13 H 0.072 0.928
14 C -0.158 4.158
15 N -0.610 5.610
16 C 0.547 3.453
17 O -0.558 6.558
18 C -0.102 4.102
19 S -0.189 6.189
20 C -0.614 4.614
21 H 0.071 0.929
22 C -0.018 4.018
23 N -0.911 5.911
24 Si 1.139 2.861
25 H -0.266 1.266
26 H -0.265 1.265
27 H -0.277 1.277
28 C 0.102 3.898
29 H 0.079 0.921
30 H 0.091 0.909
31 H 0.075 0.925
32 H 0.256 0.744
33 H 0.079 0.921
34 H 0.074 0.926
35 H 0.361 0.639
36 H 0.116 0.884
37 H 0.096 0.904
38 H 0.033 0.967
39 H 0.094 0.906
40 H 0.055 0.945
41 H 0.105 0.895
42 H 0.100 0.900
43 H 0.261 0.739
44 H 0.072 0.928
45 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.022 32.718 -2.158 36.944
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.210 4.210
3 C -0.138 4.138
4 O 0.021 5.979
5 N -0.095 5.095
6 C -0.153 4.153
7 C 0.009 3.991
8 N -0.308 5.308
9 C -0.022 4.022
10 H 0.097 0.903
11 C -0.147 4.147
12 C 0.027 3.973
13 H 0.090 0.910
14 C -0.216 4.216
15 N -0.345 5.345
16 C 0.335 3.665
17 O -0.437 6.437
18 C -0.253 4.253
19 S 0.038 5.962
20 C -0.762 4.762
21 H 0.090 0.910
22 C -0.221 4.221
23 N -0.546 5.546
24 Si 0.957 3.043
25 H -0.191 1.191
26 H -0.190 1.190
27 H -0.202 1.202
28 C -0.021 4.021
29 H 0.097 0.903
30 H 0.110 0.890
31 H 0.093 0.907
32 H 0.272 0.728
33 H 0.097 0.903
34 H 0.092 0.908
35 H 0.182 0.818
36 H 0.134 0.866
37 H 0.114 0.886
38 H 0.052 0.948
39 H 0.112 0.888
40 H 0.074 0.926
41 H 0.123 0.877
42 H 0.118 0.882
43 H 0.072 0.928
44 H 0.090 0.910
45 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -14.634 29.665 -2.289 33.157
hybrid contribution -1.861 1.658 0.063 2.493
sum -16.495 31.323 -2.226 35.471
Atomic orbital electron populations
1.20191 0.85186 1.04368 1.03452 1.21721 0.99988 0.90822 1.08450
1.26617 0.81887 1.02893 1.02439 1.84811 1.30828 1.15107 1.67170
1.73917 1.23983 0.92100 1.19532 1.23628 0.88762 0.98861 1.04013
1.20200 1.01457 0.86841 0.90634 1.60107 1.55743 1.02091 1.12826
1.22490 0.93927 0.87232 0.98579 0.90331 1.22855 1.03588 0.91585
0.96635 1.21767 0.88616 0.97534 0.89424 0.90959 1.22090 1.02549
1.01023 0.95960 1.48439 1.35994 1.06334 1.43747 1.19597 0.82835
0.82046 0.82019 1.90676 1.63231 1.38814 1.50951 1.23169 0.99482
1.00720 1.01959 1.84971 1.44895 1.07936 1.58379 1.24035 1.21822
1.00157 1.30155 0.91029 1.27857 1.02787 0.90548 1.00935 1.70886
1.29743 1.26243 1.27745 0.82688 0.71905 0.76770 0.72981 1.19073
1.18954 1.20174 1.22479 0.98767 0.82850 0.98051 0.90261 0.89043
0.90659 0.72831 0.90294 0.90756 0.81777 0.86554 0.88584 0.94809
0.88774 0.92604 0.87706 0.88185 0.92830 0.90962 0.90779
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.24 10.37 71.24 0.74 0.50 16
2 C -0.21 -2.07 6.32 -19.73 -0.12 -2.19 16
3 C -0.06 -0.51 12.26 67.17 0.82 0.32 16
4 O 0.09 1.52 11.20 71.59 0.80 2.32 16
5 N -0.39 -8.62 12.07 -49.55 -0.60 -9.22 16
6 C 0.01 0.11 6.84 43.58 0.30 0.40 16
7 C 0.14 1.93 6.06 85.56 0.52 2.45 16
8 N -0.67 -8.65 6.36 -488.42 -3.11 -11.76 16
9 C 0.09 1.23 3.32 46.30 0.15 1.39 16
10 H 0.08 0.97 7.92 -2.38 -0.02 0.95 16
11 C -0.11 -1.32 5.96 31.79 0.19 -1.13 16
12 C 0.13 2.86 3.46 45.35 0.16 3.01 16
13 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16
14 C -0.16 -3.72 9.11 71.98 0.66 -3.06 16
15 N -0.61 -17.61 3.06 -788.03 -2.41 -20.02 16
16 C 0.55 21.99 7.66 87.66 0.67 22.67 16
17 O -0.56 -26.93 14.91 -3.06 -0.05 -26.97 16
18 C -0.10 -4.43 5.16 71.24 0.37 -4.06 16
19 S -0.19 -10.83 19.60 -56.49 -1.11 -11.94 16
20 C -0.61 -36.73 9.50 67.95 0.65 -36.08 16
21 H 0.07 4.07 7.80 -2.91 -0.02 4.04 16
22 C -0.02 -1.07 5.49 84.86 0.47 -0.61 16
23 N -0.91 -59.04 13.67 21.65 0.30 -58.75 16
24 Si 1.14 50.84 29.92 68.60 2.05 52.89 16
25 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16
26 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16
27 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16
28 C 0.10 2.27 6.34 86.85 0.55 2.82 16
29 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16
30 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16
31 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16
32 H 0.26 -0.33 8.06 -2.91 -0.02 -0.36 16
33 H 0.08 0.74 8.09 -2.38 -0.02 0.72 16
34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16
35 H 0.36 3.14 8.52 -89.69 -0.76 2.37 16
36 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16
37 H 0.10 1.11 7.84 -2.39 -0.02 1.09 16
38 H 0.03 1.07 6.89 -2.39 -0.02 1.05 16
39 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16
40 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16
41 H 0.10 4.20 7.85 -2.39 -0.02 4.18 16
42 H 0.10 4.14 8.14 -2.40 -0.02 4.12 16
43 H 0.26 17.57 7.12 -92.71 -0.66 16.91 16
44 H 0.07 1.66 7.48 -2.39 -0.02 1.64 16
45 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16
Total: -1.00 -85.89 388.95 2.33 -83.56
By element:
Atomic # 1 Polarization: 13.13 SS G_CDS: 0.35 Total: 13.48 kcal
Atomic # 6 Polarization: -19.69 SS G_CDS: 6.11 Total: -13.58 kcal
Atomic # 7 Polarization: -93.92 SS G_CDS: -5.83 Total: -99.75 kcal
Atomic # 8 Polarization: -25.41 SS G_CDS: 0.76 Total: -24.66 kcal
Atomic # 14 Polarization: 50.84 SS G_CDS: 2.05 Total: 52.89 kcal
Atomic # 16 Polarization: -10.83 SS G_CDS: -1.11 Total: -11.94 kcal
Total: -85.89 2.33 -83.56 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001278344748.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 80.679 kcal
(2) G-P(sol) polarization free energy of solvation -85.889 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.210 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.556 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.877 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds