Wall clock time and date at job start Tue Mar 31 2020 22:49:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.35452 * 128.00463 * 2 1
4 4 O 1.34041 * 106.44706 * 179.97438 * 3 2 1
5 5 N 1.20921 * 111.56502 * 359.70527 * 4 3 2
6 6 C 1.30174 * 111.60352 * 0.49005 * 5 4 3
7 7 C 1.50702 * 126.80008 * 179.79786 * 6 5 4
8 8 N 1.46904 * 109.47014 * 269.68114 * 7 6 5
9 9 C 1.46899 * 111.00241 * 180.02562 * 8 7 6
10 10 H 1.08997 * 110.88409 * 37.42496 * 9 8 7
11 11 C 1.55156 * 111.00839 * 161.35341 * 9 8 7
12 12 C 1.54327 * 103.02221 * 153.38068 * 11 9 8
13 13 H 1.09005 * 109.99076 * 218.66730 * 12 11 9
14 14 C 1.52994 * 109.78079 * 97.49705 * 12 11 9
15 15 N 1.47022 * 107.26447 * 338.13784 * 12 11 9
16 16 C 1.34780 * 125.64445 * 178.85381 * 15 12 11
17 17 O 1.21280 * 120.00423 * 359.71250 * 16 15 12
18 18 C 1.50701 * 119.99795 * 179.71926 * 16 15 12
19 19 S 1.81002 * 109.47156 * 179.97438 * 18 16 15
20 20 C 1.76193 * 100.00049 * 180.02562 * 19 18 16
21 21 H 1.08005 * 120.00026 * 359.97438 * 20 19 18
22 22 C 1.38806 * 120.00056 * 180.02562 * 20 19 18
23 23 N 1.31631 * 120.00121 * 179.97438 * 22 20 19
24 24 Si 1.86799 * 119.99856 * 0.02562 * 22 20 19
25 25 H 1.48489 * 109.47437 * 89.99924 * 24 22 20
26 26 H 1.48500 * 109.46931 * 210.00082 * 24 22 20
27 27 H 1.48503 * 109.46655 * 329.99597 * 24 22 20
28 28 C 1.47417 * 108.70718 * 358.58681 * 15 12 11
29 29 H 1.09009 * 109.46854 * 270.03745 * 1 2 3
30 30 H 1.08990 * 109.47464 * 30.04045 * 1 2 3
31 31 H 1.09001 * 109.46942 * 150.04510 * 1 2 3
32 32 H 1.08000 * 126.77995 * 359.97438 * 3 2 1
33 33 H 1.08998 * 109.47127 * 149.68711 * 7 6 5
34 34 H 1.08999 * 109.47697 * 29.68035 * 7 6 5
35 35 H 1.00903 * 111.00245 * 303.95855 * 8 7 6
36 36 H 1.09000 * 110.71517 * 271.94460 * 11 9 8
37 37 H 1.09003 * 110.71734 * 35.02772 * 11 9 8
38 38 H 1.08995 * 109.47193 * 300.80255 * 14 12 11
39 39 H 1.09004 * 109.46931 * 60.80688 * 14 12 11
40 40 H 1.09006 * 109.47131 * 180.80442 * 14 12 11
41 41 H 1.09002 * 109.47060 * 299.99722 * 18 16 15
42 42 H 1.09001 * 109.47380 * 59.99809 * 18 16 15
43 43 H 0.96999 * 120.00138 * 179.97438 * 23 22 20
44 44 H 1.09003 * 110.36926 * 143.19213 * 28 15 12
45 45 H 1.08999 * 110.36739 * 265.51711 * 28 15 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3410 1.0673 0.0000
4 8 3.5876 0.5748 0.0006
5 7 3.5878 -0.6344 0.0067
6 6 2.3776 -1.1139 0.0006
7 6 1.9828 -2.5683 0.0010
8 7 1.8550 -3.0413 -1.3840
9 6 1.4697 -4.4583 -1.4229
10 1 0.7645 -4.6913 -0.6251
11 6 0.8872 -4.8384 -2.8099
12 6 1.1904 -6.3481 -2.9124
13 1 1.4828 -6.6011 -3.9316
14 6 -0.0461 -7.1532 -2.5077
15 7 2.2979 -6.6345 -1.9888
16 6 2.8441 -7.8470 -1.7694
17 8 2.4180 -8.8192 -2.3560
18 6 3.9841 -7.9946 -0.7949
19 16 4.4933 -9.7300 -0.7204
20 6 5.7985 -9.6156 0.4575
21 1 6.0539 -8.6592 0.8895
22 6 6.4993 -10.7545 0.8297
23 7 7.4748 -10.6690 1.7093
24 14 6.0591 -12.4083 0.0810
25 1 6.8577 -12.6216 -1.1526
26 1 6.3566 -13.4880 1.0562
27 1 4.6129 -12.4300 -0.2555
28 6 2.7163 -5.3749 -1.3474
29 1 -0.3633 0.0007 1.0278
30 1 -0.3634 0.8895 -0.5144
31 1 -0.3633 -0.8904 -0.5131
32 1 2.0576 2.1094 -0.0004
33 1 1.0285 -2.6856 0.5144
34 1 2.7463 -3.1520 0.5152
35 1 1.1995 -2.4743 -1.9007
36 1 -0.1868 -4.6554 -2.8403
37 1 1.3931 -4.2895 -3.6042
38 1 -0.3270 -6.8985 -1.4858
39 1 -0.8701 -6.9164 -3.1809
40 1 0.1780 -8.2183 -2.5682
41 1 4.8244 -7.3829 -1.1234
42 1 3.6616 -7.6682 0.1938
43 1 7.9643 -11.4649 1.9697
44 1 2.9943 -5.5523 -0.3084
45 1 3.5483 -4.9295 -1.8928
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001278344750.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:49:54
Heat of formation + Delta-G solvation = 29.535810 kcal
Electronic energy + Delta-G solvation = -26552.609194 eV
Core-core repulsion = 22699.733049 eV
Total energy + Delta-G solvation = -3852.876146 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-45.28747 -40.21633 -37.96248 -36.36595 -34.49155 -32.61086 -32.41769 -32.23363
-29.97838 -28.84826 -28.56922 -26.16890 -26.02185 -25.58403 -22.46042 -22.00758
-21.56300 -20.89867 -19.14405 -17.93167 -17.84654 -17.69791 -16.74238 -16.42608
-15.91682 -15.44079 -14.97920 -14.82519 -14.69522 -14.55699 -14.05880 -13.96799
-13.79647 -13.61130 -13.32035 -13.13344 -13.11730 -12.86419 -12.76920 -12.58856
-12.43579 -12.08733 -11.85298 -11.45874 -11.37188 -11.25845 -11.18255 -10.99276
-10.88202 -10.57691 -10.35344 -9.83647 -9.76652 -9.45797 -8.99271 -8.98130
-8.56042 -8.47415 -6.89686 -6.26559 -3.98190 1.14505 1.75787 2.69280
2.90500 2.97276 3.17397 3.35007 3.51890 3.55109 3.67972 3.84820
4.06346 4.22045 4.33138 4.35786 4.43271 4.61283 4.69966 4.75249
4.86963 5.01193 5.02385 5.06302 5.12340 5.17192 5.18785 5.26669
5.30014 5.32009 5.33627 5.43239 5.49914 5.54565 5.66338 5.70335
5.74522 5.81399 5.97145 6.05200 6.21375 6.43769 6.52633 6.82446
7.61363 7.95102 7.96576 8.44472 8.47282 9.19519 10.82728
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.013461 B = 0.002436 C = 0.002113
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2079.540912 B =11491.231799 C =13248.444646
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 C -0.201 4.201
3 C -0.066 4.066
4 O 0.105 5.895
5 N -0.341 5.341
6 C 0.019 3.981
7 C 0.136 3.864
8 N -0.670 5.670
9 C 0.074 3.926
10 H 0.066 0.934
11 C -0.127 4.127
12 C 0.140 3.860
13 H 0.076 0.924
14 C -0.164 4.164
15 N -0.620 5.620
16 C 0.549 3.451
17 O -0.516 6.516
18 C -0.118 4.118
19 S -0.142 6.142
20 C -0.520 4.520
21 H 0.088 0.912
22 C 0.095 3.905
23 N -0.881 5.881
24 Si 0.857 3.143
25 H -0.267 1.267
26 H -0.274 1.274
27 H -0.235 1.235
28 C 0.110 3.890
29 H 0.073 0.927
30 H 0.073 0.927
31 H 0.068 0.932
32 H 0.215 0.785
33 H 0.057 0.943
34 H 0.095 0.905
35 H 0.347 0.653
36 H 0.082 0.918
37 H 0.086 0.914
38 H 0.054 0.946
39 H 0.061 0.939
40 H 0.075 0.925
41 H 0.096 0.904
42 H 0.095 0.905
43 H 0.271 0.729
44 H 0.076 0.924
45 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.828 25.738 -5.423 32.347
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.205 4.205
3 C -0.147 4.147
4 O 0.036 5.964
5 N -0.043 5.043
6 C -0.141 4.141
7 C 0.006 3.994
8 N -0.303 5.303
9 C -0.036 4.036
10 H 0.083 0.917
11 C -0.165 4.165
12 C 0.036 3.964
13 H 0.094 0.906
14 C -0.222 4.222
15 N -0.358 5.358
16 C 0.338 3.662
17 O -0.390 6.390
18 C -0.269 4.269
19 S 0.084 5.916
20 C -0.668 4.668
21 H 0.106 0.894
22 C -0.113 4.113
23 N -0.517 5.517
24 Si 0.682 3.318
25 H -0.192 1.192
26 H -0.200 1.200
27 H -0.159 1.159
28 C -0.014 4.014
29 H 0.092 0.908
30 H 0.092 0.908
31 H 0.087 0.913
32 H 0.231 0.769
33 H 0.075 0.925
34 H 0.113 0.887
35 H 0.166 0.834
36 H 0.100 0.900
37 H 0.105 0.895
38 H 0.073 0.927
39 H 0.080 0.920
40 H 0.094 0.906
41 H 0.114 0.886
42 H 0.113 0.887
43 H 0.080 0.920
44 H 0.094 0.906
45 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges -17.374 23.409 -6.220 29.808
hybrid contribution -1.100 0.841 0.883 1.642
sum -18.474 24.249 -5.337 30.948
Atomic orbital electron populations
1.20089 0.87434 1.03131 1.02745 1.21347 0.98598 0.91794 1.08750
1.25776 0.83324 1.01138 1.04472 1.84875 1.29028 1.15666 1.66790
1.73925 1.22273 0.91000 1.17056 1.23292 0.88585 0.97885 1.04350
1.20224 1.01100 0.87460 0.90580 1.60263 1.54998 1.02471 1.12571
1.22659 0.95854 0.87428 0.97663 0.91658 1.22865 1.01480 0.95174
0.96976 1.21414 0.87343 0.93539 0.94120 0.90561 1.22170 0.96408
1.02496 1.01136 1.48487 1.35775 1.07177 1.44362 1.19944 0.82973
0.80888 0.82412 1.90684 1.62090 1.36893 1.49363 1.23269 0.98435
1.04562 1.00586 1.84749 1.44973 1.03496 1.58366 1.22312 1.18199
0.99199 1.27048 0.89400 1.24715 0.93688 0.98971 0.93957 1.69941
1.20662 1.30233 1.30883 0.86731 0.81993 0.83362 0.79747 1.19197
1.19963 1.15933 1.22270 0.96900 0.83439 0.98771 0.90795 0.90846
0.91268 0.76892 0.92512 0.88678 0.83395 0.89956 0.89545 0.92709
0.92034 0.90585 0.88568 0.88689 0.91956 0.90567 0.90073
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.27 10.37 36.01 0.37 0.11 16
2 C -0.20 -1.28 6.32 -104.42 -0.66 -1.94 16
3 C -0.07 -0.38 12.26 29.74 0.36 -0.01 16
4 O 0.10 0.97 11.20 17.18 0.19 1.16 16
5 N -0.34 -3.86 12.07 33.42 0.40 -3.46 16
6 C 0.02 0.17 6.84 -82.10 -0.56 -0.39 16
7 C 0.14 1.08 6.06 -4.97 -0.03 1.05 16
8 N -0.67 -5.16 6.36 -105.72 -0.67 -5.83 16
9 C 0.07 0.61 3.32 -65.56 -0.22 0.40 16
10 H 0.07 0.52 7.92 -51.93 -0.41 0.10 16
11 C -0.13 -0.97 5.95 -24.90 -0.15 -1.12 16
12 C 0.14 1.59 3.51 -66.95 -0.23 1.36 16
13 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16
14 C -0.16 -1.85 9.05 37.15 0.34 -1.51 16
15 N -0.62 -8.77 3.08 -163.01 -0.50 -9.27 16
16 C 0.55 10.31 7.65 -10.98 -0.08 10.23 16
17 O -0.52 -11.35 14.75 5.56 0.08 -11.26 16
18 C -0.12 -2.41 5.16 36.01 0.19 -2.22 16
19 S -0.14 -3.69 18.55 -107.50 -1.99 -5.69 16
20 C -0.52 -15.26 10.04 30.94 0.31 -14.95 16
21 H 0.09 2.70 8.03 -52.48 -0.42 2.27 16
22 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16
23 N -0.88 -26.97 13.97 55.49 0.78 -26.19 16
24 Si 0.86 22.11 27.74 -169.99 -4.72 17.40 16
25 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16
26 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16
27 H -0.24 -6.06 6.74 56.52 0.38 -5.67 16
28 C 0.11 1.26 6.34 -2.53 -0.02 1.25 16
29 H 0.07 0.23 8.14 -51.92 -0.42 -0.20 16
30 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16
31 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16
32 H 0.21 0.28 8.06 -52.49 -0.42 -0.14 16
33 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16
34 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16
35 H 0.35 2.13 8.52 -39.29 -0.33 1.79 16
36 H 0.08 0.47 7.83 -51.93 -0.41 0.06 16
37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16
38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16
40 H 0.08 1.11 6.74 -51.93 -0.35 0.76 16
41 H 0.10 1.88 8.14 -51.92 -0.42 1.46 16
42 H 0.09 1.82 7.85 -51.91 -0.41 1.41 16
43 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16
44 H 0.08 0.89 7.48 -51.93 -0.39 0.50 16
45 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16
LS Contribution 387.29 15.07 5.84 5.84
Total: -1.00 -35.95 387.29 -8.02 -43.96
By element:
Atomic # 1 Polarization: 5.32 SS G_CDS: -6.95 Total: -1.62 kcal
Atomic # 6 Polarization: -4.56 SS G_CDS: -0.48 Total: -5.03 kcal
Atomic # 7 Polarization: -44.76 SS G_CDS: 0.00 Total: -44.76 kcal
Atomic # 8 Polarization: -10.38 SS G_CDS: 0.27 Total: -10.10 kcal
Atomic # 14 Polarization: 22.11 SS G_CDS: -4.72 Total: 17.40 kcal
Atomic # 16 Polarization: -3.69 SS G_CDS: -1.99 Total: -5.69 kcal
Total LS contribution 5.84 Total: 5.84 kcal
Total: -35.95 -8.02 -43.96 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001278344750.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.500 kcal
(2) G-P(sol) polarization free energy of solvation -35.947 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.553 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.965 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.536 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds